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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 FvH4_5g33320 |
| malus_domestica | MD15G1395700.v1.1 |
| prunus_persica | Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1 Prupe.1G544900_v2.0.a1 |
| pyrus_communis | pycom15g35630 |
| rosa_chinensis | RchiOBHm_Chr7g0232051 |
| rosa_laevigata | RLG00000001397 |
| rosa_multiflora | Rmu_sc0004618.1_g000018 Rmu_sc0009837.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00228860 Rroxscaffold_3G00242020 Rroxscaffold_4G00331070 |
| rosa_rugosa | Rorug07G0268700 |
| rosa_samantha | Rh7AG423100 Rh7BG397300 Rh7CG443500 Rh7DG415400 |
| rosa_wichuraiana | Rw0G010280 Rw7G035000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 213 |
| AccB1I | GGYRCC | 1 cut(s) | 355 |
| AccBSI | CCGCTC | 1 cut(s) | 263 |
| AccI | GTMKAC | 3 cut(s) | 570, 1069, 1268 |
| AccIII | TCCGGA | 1 cut(s) | 1565 |
| AciI | CCGC | 1 cut(s) | 261 |
| AclWI | GGATC | 3 cut(s) | 69, 1288, 1385 |
| AcsI | RAATTY | 3 cut(s) | 1258, 1432, 1528 |
| AcuI | CTGAAG | 4 cut(s) | 720, 951, 1326, 1595 |
| AfaI | GTAC | 5 cut(s) | 161, 397, 772, 936, 1378 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 190, 557, 623, 1565 |
| AflIII | ACRYGT | 1 cut(s) | 1379 |
| AgeI | ACCGGT | 2 cut(s) | 550, 616 |
| AgsI | TTSAA | 6 cut(s) | 72, 436, 1104, 1147, 1438, 1491 |
| AhlI | ACTAGT | 1 cut(s) | 767 |
| AjnI | CCWGG | 2 cut(s) | 280, 1177 |
| Alw21I | GWGCWC | 3 cut(s) | 153, 229, 767 |
| Alw26I | GTCTC | 2 cut(s) | 664, 1504 |
| Alw44I | GTGCAC | 1 cut(s) | 763 |
| AlwI | GGATC | 3 cut(s) | 69, 1288, 1385 |
| Aor13HI | TCCGGA | 1 cut(s) | 1565 |
| AoxI | GGCC | 1 cut(s) | 1570 |
| ApaLI | GTGCAC | 1 cut(s) | 763 |
| ApeKI | GCWGC | 4 cut(s) | 92, 651, 731, 881 |
| ApoI | RAATTY | 3 cut(s) | 1258, 1432, 1528 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1215, 1247, 1250, 1282 |
| AseI | ATTAAT | 1 cut(s) | 828 |
| AsiGI | ACCGGT | 2 cut(s) | 550, 616 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1486 |
| AspS9I | GGNCC | 2 cut(s) | 1170, 1563 |
| AsuHPI | GGTGA | 1 cut(s) | 416 |
| AsuII | TTCGAA | 1 cut(s) | 1586 |
| AvaII | GGWCC | 2 cut(s) | 1170, 1563 |
| BaeGI | GKGCMC | 1 cut(s) | 767 |
| BanI | GGYRCC | 1 cut(s) | 355 |
| BanII | GRGCYC | 2 cut(s) | 153, 229 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 718, 750 |
| Bbv12I | GWGCWC | 3 cut(s) | 153, 229, 767 |
| BbvI | GCAGC | 4 cut(s) | 79, 663, 718, 868 |
| BccI | CCATC | 1 cut(s) | 997 |
| BciT130I | CCWGG | 2 cut(s) | 282, 1179 |
| BclI | TGATCA | 2 cut(s) | 291, 1012 |
| BcoDI | GTCTC | 2 cut(s) | 664, 1504 |
| BcuI | ACTAGT | 1 cut(s) | 767 |
| BfaI | CTAG | 6 cut(s) | 45, 324, 741, 768, 858, 1160 |
| BfmI | CTRYAG | 2 cut(s) | 451, 1551 |
| BisI | GCNGC | 4 cut(s) | 93, 652, 732, 882 |
| BlsI | GCNGC | 4 cut(s) | 94, 653, 733, 883 |
| BmcAI | AGTACT | 1 cut(s) | 772 |
| Bme1390I | CCNGG | 2 cut(s) | 282, 1179 |
| Bme18I | GGWCC | 2 cut(s) | 1170, 1563 |
| BmgT120I | GGNCC | 2 cut(s) | 1170, 1563 |
| BmiI | GGNNCC | 3 cut(s) | 357, 987, 1594 |
| BmrFI | CCNGG | 2 cut(s) | 282, 1179 |
| BmsI | GCATC | 7 cut(s) | 259, 262, 352, 769, 800, 1209, 1520 |
| BpmI | CTGGAG | 2 cut(s) | 925, 1200 |
| Bpu10I | CCTNAGC | 1 cut(s) | 720 |
| Bpu14I | TTCGAA | 1 cut(s) | 1586 |
| BpuEI | CTTGAG | 2 cut(s) | 215, 249 |
| BsaAI | YACGTR | 1 cut(s) | 917 |
| BsaJI | CCNNGG | 3 cut(s) | 280, 1559, 1596 |
| BsaWI | WCCGGW | 3 cut(s) | 550, 616, 1565 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 104, 134 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 190, 557, 623, 1565 |
| Bse118I | RCCGGY | 3 cut(s) | 482, 550, 616 |
| Bse1I | ACTGG | 2 cut(s) | 942, 1137 |
| Bse3DI | GCAATG | 2 cut(s) | 236, 451 |
| BseAI | TCCGGA | 1 cut(s) | 1565 |
| BseBI | CCWGG | 2 cut(s) | 282, 1179 |
| BseDI | CCNNGG | 3 cut(s) | 280, 1559, 1596 |
| BseGI | GGATG | 2 cut(s) | 958, 1511 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 190, 557, 623, 1565 |
| BseMI | GCAATG | 2 cut(s) | 236, 451 |
| BseMII | CTCAG | 4 cut(s) | 6, 47, 87, 1233 |
| BseNI | ACTGG | 2 cut(s) | 942, 1137 |
| BseRI | GAGGAG | 2 cut(s) | 218, 1374 |
| BseSI | GKGCMC | 1 cut(s) | 767 |
| BseXI | GCAGC | 4 cut(s) | 79, 663, 718, 868 |
| Bsh1285I | CGRYCG | 3 cut(s) | 508, 555, 621 |
| BshFI | GGCC | 1 cut(s) | 1572 |
| BshNI | GGYRCC | 1 cut(s) | 355 |
| BshTI | ACCGGT | 2 cut(s) | 550, 616 |
| BsiEI | CGRYCG | 3 cut(s) | 508, 555, 621 |
| BsiHKAI | GWGCWC | 3 cut(s) | 153, 229, 767 |
| BsiSI | CCGG | 4 cut(s) | 483, 551, 617, 1566 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 190, 557, 623, 1565 |
| BsmAI | GTCTC | 2 cut(s) | 664, 1504 |
| BsnI | GGCC | 1 cut(s) | 1572 |
| Bsp119I | TTCGAA | 1 cut(s) | 1586 |
| Bsp1286I | GDGCHC | 3 cut(s) | 153, 229, 767 |
| Bsp13I | TCCGGA | 1 cut(s) | 1565 |
| Bsp1407I | TGTACA | 1 cut(s) | 159 |
| Bsp143I | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| BspACI | CCGC | 1 cut(s) | 261 |
| BspANI | GGCC | 1 cut(s) | 1572 |
| BspCNI | CTCAG | 4 cut(s) | 7, 46, 88, 1234 |
| BspEI | TCCGGA | 1 cut(s) | 1565 |
| BspLI | GGNNCC | 3 cut(s) | 357, 987, 1594 |
| BspMAI | CTGCAG | 1 cut(s) | 1555 |
| BspPI | GGATC | 3 cut(s) | 69, 1288, 1385 |
| BspQI | GCTCTTC | 1 cut(s) | 141 |
| BspT104I | TTCGAA | 1 cut(s) | 1586 |
| BspT107I | GGYRCC | 1 cut(s) | 355 |
| BsrBI | CCGCTC | 1 cut(s) | 263 |
| BsrDI | GCAATG | 2 cut(s) | 236, 451 |
| BsrFI | RCCGGY | 3 cut(s) | 482, 550, 616 |
| BsrGI | TGTACA | 1 cut(s) | 159 |
| BsrI | ACTGG | 2 cut(s) | 942, 1137 |
| BssAI | RCCGGY | 3 cut(s) | 482, 550, 616 |
| BssECI | CCNNGG | 3 cut(s) | 280, 1559, 1596 |
| BssMI | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| BssT1I | CCWWGG | 1 cut(s) | 1596 |
| Bst2UI | CCWGG | 2 cut(s) | 282, 1179 |
| Bst4CI | ACNGT | 7 cut(s) | 68, 400, 469, 1316, 1376, 1507, 1563 |
| Bst6I | CTCTTC | 3 cut(s) | 141, 1452, 1477 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 362 |
| BstAUI | TGTACA | 1 cut(s) | 159 |
| BstBAI | YACGTR | 1 cut(s) | 917 |
| BstBI | TTCGAA | 1 cut(s) | 1586 |
| BstC8I | GCNNGC | 2 cut(s) | 105, 277 |
| BstDEI | CTNAG | 5 cut(s) | 15, 33, 96, 720, 1242 |
| BstDSI | CCRYGG | 1 cut(s) | 1559 |
| BstF5I | GGATG | 2 cut(s) | 958, 1511 |
| BstKTI | GATC | 5 cut(s) | 64, 294, 1015, 1296, 1393 |
| BstMAI | GTCTC | 2 cut(s) | 664, 1504 |
| BstMBI | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| BstMCI | CGRYCG | 3 cut(s) | 508, 555, 621 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 233, 247, 362, 416, 737, 788, 1476 |
| BstNI | CCWGG | 2 cut(s) | 282, 1179 |
| BstNSI | RCATGY | 1 cut(s) | 1383 |
| BstSCI | CCNGG | 2 cut(s) | 280, 1177 |
| BstSFI | CTRYAG | 2 cut(s) | 451, 1551 |
| BstSLI | GKGCMC | 1 cut(s) | 767 |
| BstV1I | GCAGC | 4 cut(s) | 79, 663, 718, 868 |
| BstX2I | RGATCY | 1 cut(s) | 1390 |
| BstYI | RGATCY | 1 cut(s) | 1390 |
| BsuRI | GGCC | 1 cut(s) | 1572 |
| BtgI | CCRYGG | 1 cut(s) | 1559 |
| BtsCI | GGATG | 2 cut(s) | 958, 1511 |
| BtsIMutI | CAGTG | 3 cut(s) | 405, 949, 1144 |
| Cac8I | GCNNGC | 2 cut(s) | 105, 277 |
| Cfr10I | RCCGGY | 3 cut(s) | 482, 550, 616 |
| Cfr13I | GGNCC | 2 cut(s) | 1170, 1563 |
| CpoI | CGGWCCG | 1 cut(s) | 1563 |
| CseI | GACGC | 1 cut(s) | 1404 |
| Csp6I | GTAC | 5 cut(s) | 160, 396, 771, 935, 1377 |
| CspAI | ACCGGT | 2 cut(s) | 550, 616 |
| CspI | CGGWCCG | 1 cut(s) | 1563 |
| CviAII | CATG | 3 cut(s) | 647, 1264, 1380 |
| CviQI | GTAC | 5 cut(s) | 160, 396, 771, 935, 1377 |
| DdeI | CTNAG | 5 cut(s) | 15, 33, 96, 720, 1242 |
| DpnI | GATC | 5 cut(s) | 63, 293, 1014, 1295, 1392 |
| DpnII | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| DraI | TTTAAA | 1 cut(s) | 714 |
| Eam1104I | CTCTTC | 3 cut(s) | 141, 1452, 1477 |
| EarI | CTCTTC | 3 cut(s) | 141, 1452, 1477 |
| Ecl136II | GAGCTC | 2 cut(s) | 151, 227 |
| Eco130I | CCWWGG | 1 cut(s) | 1596 |
| Eco147I | AGGCCT | 1 cut(s) | 1572 |
| Eco24I | GRGCYC | 2 cut(s) | 153, 229 |
| Eco47I | GGWCC | 2 cut(s) | 1170, 1563 |
| Eco53kI | GAGCTC | 2 cut(s) | 151, 227 |
| Eco57I | CTGAAG | 4 cut(s) | 720, 951, 1326, 1595 |
| EcoICRI | GAGCTC | 2 cut(s) | 151, 227 |
| EcoRI | GAATTC | 1 cut(s) | 1528 |
| EcoRII | CCWGG | 2 cut(s) | 280, 1177 |
| EcoT14I | CCWWGG | 1 cut(s) | 1596 |
| EcoT38I | GRGCYC | 2 cut(s) | 153, 229 |
| ErhI | CCWWGG | 1 cut(s) | 1596 |
| FaeI | CATG | 3 cut(s) | 650, 1267, 1383 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 182, 214 |
| FatI | CATG | 3 cut(s) | 646, 1263, 1379 |
| FbaI | TGATCA | 2 cut(s) | 291, 1012 |
| FblI | GTMKAC | 3 cut(s) | 570, 1069, 1268 |
| Fnu4HI | GCNGC | 4 cut(s) | 93, 652, 732, 882 |
| FokI | GGATG | 2 cut(s) | 945, 1498 |
| FriOI | GRGCYC | 2 cut(s) | 153, 229 |
| Fsp4HI | GCNGC | 4 cut(s) | 93, 652, 732, 882 |
| FspBI | CTAG | 6 cut(s) | 45, 324, 741, 768, 858, 1160 |
| GluI | GCNGC | 4 cut(s) | 93, 652, 732, 882 |
| GsuI | CTGGAG | 2 cut(s) | 925, 1200 |
| HaeIII | GGCC | 1 cut(s) | 1572 |
| HapII | CCGG | 4 cut(s) | 483, 551, 617, 1566 |
| HgaI | GACGC | 1 cut(s) | 1404 |
| Hin1II | CATG | 3 cut(s) | 650, 1267, 1383 |
| HincII | GTYRAC | 5 cut(s) | 26, 571, 1070, 1214, 1269 |
| HindII | GTYRAC | 5 cut(s) | 26, 571, 1070, 1214, 1269 |
| HinfI | GANTC | 7 cut(s) | 98, 380, 428, 896, 975, 1096, 1487 |
| HpaII | CCGG | 4 cut(s) | 483, 551, 617, 1566 |
| HphI | GGTGA | 1 cut(s) | 416 |
| Hpy166II | GTNNAC | 6 cut(s) | 26, 571, 765, 1070, 1214, 1269 |
| Hpy188I | TCNGA | 9 cut(s) | 247, 379, 664, 980, 1095, 1201, 1243, 1298, 1428 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 143, 254, 1104, 1160, 1566 |
| Hpy8I | GTNNAC | 6 cut(s) | 26, 571, 765, 1070, 1214, 1269 |
| HpyAV | CCTTC | 6 cut(s) | 184, 972, 1110, 1141, 1206, 1582 |
| HpyCH4III | ACNGT | 7 cut(s) | 68, 400, 469, 1316, 1376, 1507, 1563 |
| HpyCH4IV | ACGT | 1 cut(s) | 916 |
| HpyCH4V | TGCA | 9 cut(s) | 241, 304, 365, 444, 765, 782, 884, 1447, 1553 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 233, 247, 362, 416, 737, 788, 1476 |
| HpyF3I | CTNAG | 5 cut(s) | 15, 33, 96, 720, 1242 |
| HpySE526I | ACGT | 1 cut(s) | 916 |
| Hsp92II | CATG | 3 cut(s) | 650, 1267, 1383 |
| Kpn2I | TCCGGA | 1 cut(s) | 1565 |
| Ksp22I | TGATCA | 2 cut(s) | 291, 1012 |
| Kzo9I | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| LguI | GCTCTTC | 1 cut(s) | 141 |
| LmnI | GCTCC | 2 cut(s) | 944, 1320 |
| Lsp1109I | GCAGC | 4 cut(s) | 79, 663, 718, 868 |
| LweI | GCATC | 7 cut(s) | 259, 262, 352, 769, 800, 1209, 1520 |
| MaeI | CTAG | 6 cut(s) | 45, 324, 741, 768, 858, 1160 |
| MaeII | ACGT | 1 cut(s) | 916 |
| MaeIII | GTNAC | 2 cut(s) | 367, 469 |
| MalI | GATC | 5 cut(s) | 63, 293, 1014, 1295, 1392 |
| MbiI | CCGCTC | 1 cut(s) | 263 |
| MboI | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| MflI | RGATCY | 1 cut(s) | 1390 |
| MhlI | GDGCHC | 3 cut(s) | 153, 229, 767 |
| MluCI | AATT | 9 cut(s) | 305, 825, 1116, 1131, 1258, 1327, 1368, 1432, 1528 |
| MlyI | GAGTC | 2 cut(s) | 107, 437 |
| MmeI | TCCRAC | 1 cut(s) | 738 |
| MroI | TCCGGA | 1 cut(s) | 1565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1486 |
| MseI | TTAA | 5 cut(s) | 713, 786, 828, 1371, 1603 |
| MslI | CAYNNNNRTG | 1 cut(s) | 875 |
| MspI | CCGG | 4 cut(s) | 483, 551, 617, 1566 |
| MspR9I | CCNGG | 2 cut(s) | 282, 1179 |
| MvaI | CCWGG | 2 cut(s) | 282, 1179 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 233, 247, 362, 416, 737, 788, 1476 |
| NdeII | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| NlaIII | CATG | 3 cut(s) | 650, 1267, 1383 |
| NlaIV | GGNNCC | 3 cut(s) | 357, 987, 1594 |
| NmuCI | GTSAC | 1 cut(s) | 469 |
| NspI | RCATGY | 1 cut(s) | 1383 |
| NspV | TTCGAA | 1 cut(s) | 1586 |
| PceI | AGGCCT | 1 cut(s) | 1572 |
| PciI | ACATGT | 1 cut(s) | 1379 |
| PciSI | GCTCTTC | 1 cut(s) | 141 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 136, 1066 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1486 |
| PfeI | GAWTC | 5 cut(s) | 380, 896, 975, 1096, 1487 |
| PflFI | GACNNNGTC | 1 cut(s) | 668 |
| PfoI | TCCNGGA | 1 cut(s) | 1177 |
| PinAI | ACCGGT | 2 cut(s) | 550, 616 |
| PkrI | GCNGC | 4 cut(s) | 94, 653, 733, 883 |
| PleI | GAGTC | 2 cut(s) | 106, 436 |
| PpsI | GAGTC | 2 cut(s) | 106, 436 |
| Ppu21I | YACGTR | 1 cut(s) | 917 |
| PscI | ACATGT | 1 cut(s) | 1379 |
| PshBI | ATTAAT | 1 cut(s) | 828 |
| PsiI | TTATAA | 1 cut(s) | 213 |
| Psp124BI | GAGCTC | 2 cut(s) | 153, 229 |
| Psp6I | CCWGG | 2 cut(s) | 280, 1177 |
| PspGI | CCWGG | 2 cut(s) | 280, 1177 |
| PspN4I | GGNNCC | 3 cut(s) | 357, 987, 1594 |
| PspPI | GGNCC | 2 cut(s) | 1170, 1563 |
| PstI | CTGCAG | 1 cut(s) | 1555 |
| PsuI | RGATCY | 1 cut(s) | 1390 |
| PsyI | GACNNNGTC | 1 cut(s) | 668 |
| RsaI | GTAC | 5 cut(s) | 161, 397, 772, 936, 1378 |
| RsaNI | GTAC | 5 cut(s) | 160, 396, 771, 935, 1377 |
| RseI | CAYNNNNRTG | 1 cut(s) | 875 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1563 |
| RsrII | CGGWCCG | 1 cut(s) | 1563 |
| SacI | GAGCTC | 2 cut(s) | 153, 229 |
| SalI | GTCGAC | 3 cut(s) | 569, 1068, 1267 |
| SapI | GCTCTTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 5 cut(s) | 713, 786, 828, 1371, 1603 |
| SatI | GCNGC | 4 cut(s) | 93, 652, 732, 882 |
| Sau3AI | GATC | 5 cut(s) | 61, 291, 1012, 1293, 1390 |
| Sau96I | GGNCC | 2 cut(s) | 1170, 1563 |
| ScaI | AGTACT | 1 cut(s) | 772 |
| SchI | GAGTC | 2 cut(s) | 107, 437 |
| ScrFI | CCNGG | 2 cut(s) | 282, 1179 |
| SduI | GDGCHC | 3 cut(s) | 153, 229, 767 |
| SfaNI | GCATC | 7 cut(s) | 259, 262, 352, 769, 800, 1209, 1520 |
| SfcI | CTRYAG | 2 cut(s) | 451, 1551 |
| SfuI | TTCGAA | 1 cut(s) | 1586 |
| SinI | GGWCC | 2 cut(s) | 1170, 1563 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 875 |
| SmlI | CTYRAG | 2 cut(s) | 230, 264 |
| SmoI | CTYRAG | 2 cut(s) | 230, 264 |
| SpeI | ACTAGT | 1 cut(s) | 767 |
| Sse9I | AATT | 9 cut(s) | 305, 825, 1116, 1131, 1258, 1327, 1368, 1432, 1528 |
| SseBI | AGGCCT | 1 cut(s) | 1572 |
| SsiI | CCGC | 1 cut(s) | 261 |
| SspI | AATATT | 1 cut(s) | 1276 |
| SspMI | CTAG | 6 cut(s) | 45, 324, 741, 768, 858, 1160 |
| SstI | GAGCTC | 2 cut(s) | 153, 229 |
| StuI | AGGCCT | 1 cut(s) | 1572 |
| StyD4I | CCNGG | 2 cut(s) | 280, 1177 |
| StyI | CCWWGG | 1 cut(s) | 1596 |
| TaaI | ACNGT | 7 cut(s) | 68, 400, 469, 1316, 1376, 1507, 1563 |
| TaiI | ACGT | 1 cut(s) | 919 |
| TaqI | TCGA | 8 cut(s) | 153, 167, 338, 504, 570, 1069, 1268, 1586 |
| TaqII | GACCGA | 1 cut(s) | 522 |
| TasI | AATT | 9 cut(s) | 305, 825, 1116, 1131, 1258, 1327, 1368, 1432, 1528 |
| TatI | WGTACW | 4 cut(s) | 159, 395, 770, 1376 |
| TfiI | GAWTC | 5 cut(s) | 380, 896, 975, 1096, 1487 |
| Tru1I | TTAA | 5 cut(s) | 713, 786, 828, 1371, 1603 |
| Tru9I | TTAA | 5 cut(s) | 713, 786, 828, 1371, 1603 |
| TscAI | CASTG | 3 cut(s) | 405, 949, 1144 |
| TseFI | GTSAC | 1 cut(s) | 469 |
| TseI | GCWGC | 4 cut(s) | 92, 651, 731, 881 |
| Tsp45I | GTSAC | 1 cut(s) | 469 |
| TspDTI | ATGAA | 2 cut(s) | 492, 1067 |
| TspGWI | ACGGA | 3 cut(s) | 289, 589, 1183 |
| TspRI | CASTG | 3 cut(s) | 405, 949, 1144 |
| Tth111I | GACNNNGTC | 1 cut(s) | 668 |
| VneI | GTGCAC | 1 cut(s) | 763 |
| VpaK11BI | GGWCC | 2 cut(s) | 1170, 1563 |
| VspI | ATTAAT | 1 cut(s) | 828 |
| XapI | RAATTY | 3 cut(s) | 1258, 1432, 1528 |
| XbaI | TCTAGA | 1 cut(s) | 1159 |
| XceI | RCATGY | 1 cut(s) | 1383 |
| XmiI | GTMKAC | 3 cut(s) | 570, 1069, 1268 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1486 |
| XspI | CTAG | 6 cut(s) | 45, 324, 741, 768, 858, 1160 |
| ZrmI | AGTACT | 1 cut(s) | 772 |