RchiOBHm_Chr7g0232051

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
55923420 .. 55929628
6209 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20797

Sequence Viewer

Length: 1527 bp
ATGGCGACTTATACTGAGATAGGTCAACACTCTCAGGATATATCTAGCTCTGCTATTTTGGATCATGGTTCGATATCGTTTGGAAGATTTGCTGCTGAGACGCTTGCTTGGGAGAAATGGTCTGTTTTTCGGCAAAATCGATGTCAGGAGGAGCTCGAAATGTACAAGTCGAATGGATTGGTAGCCCAAAAGAGGGCTTACTTTGAGGAGTATTATAAGAGAGTTAGAGCTCTCAAGGCATTGCAATCCGAGCATCAAGAAACAGCCCAAGTTGATGCTTGCCCAGATGTGCGGATGAATTCCATGCAATTAGAAAATGACAATTCTAGTAATGATATGTCAAAACAGGAAAAGTCAGCTCCTGATGCAGTTACTAACTCGGATTCTTCTGTGGGAAGTACAGTGGGTGAAGCAGGACAAGCTAACAAAGAGTCATTGAATGATTGCAATGGATATAGTGATAGTTTTACCGTCACAGATGAAGCCGGTAATACTTTATCTAATGTCGACCGAGAGCAATCTTCACATCAGGCTTCCGTATCAGCTACTCCACCGGTCGCTGGAAGCTCTGGGGTTGCCAAGCATGGCAGCCTTGTCTCTGACCCTGTCAAGCTGACTGCTAATGAGCAAAAAAAACTTGCCCCTGTTTTAAAGGCTAAGGGTAATGCTGCTTCAGTTAGAAACAAATCAAAGTTGGAGTGCACTAGTACTAAAGATGCAGTTACGGCATCAGCAAAGTCAAAATCACTTCCACTCAATCAAATTAATGGCAAAAGGGATAACATTCTTCTTCCTAGCAAAAGCAACACTCGTATGGCTGCAAGTGGTAAAGATTCCAGCCTAGTGTCCTCACATAAAAAACTTACTGAAATACGCTCCAGTGCTGCTGTCCTACATCCTTCCTCAACAAGAATCAGAATGGTTCCATCATCTCCTTGTGGTAGAAGTGATCAAAGAAACGCAAATACGAATGGCAAAGATTTGGCGGAGAGCTTACGAACAAGTCGACCCGTTCATTCACGAGCTGTTCAGAATCCTTCAAGAGAGAAGCCAATTACCAGTGGTTTGAAGGACAAGGCTCTAGAGAAATGGACCTGTCCTGGAGTTTCTAAAAAGCCTTCAGAGTTGAGCAGTCAACGGATGCAACCAAAAGTTTGCCAATCTGAGAACCAGATACCAAATTCCATGTCAACCAATATTGCCCGAAATAGATTGATCCGAGATACTGAAGCTGACTGTGGGAGCAAGAATTATGGAAAAGAAAGAAATGAGAAAGAGGGAGGAGAGGGAATTAACAGTACATGTAGAAAAGATCCAAAGTCATCCTATAATCCAGCGTCAAGTATTCAGAAAAATTTAAAGCTGGTGCATAAGGGAAAAGAGGAAGTTAGCACTATACGCAGAAGAGATTCAAAGCCTGTCTCAACTGTGGCATCCATTGTTGAGAAGAATTCTAAACCATTCTATAAGACTGCAGAACCGTGGTCCGGAGGCCTCAAGCATACTTTGAAGGGAACCAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

508

Amino Acids

55.28

Weight (kDa)

9.48

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccI GTMKAC 2 cut(s) 507, 1006
AccIII TCCGGA 1 cut(s) 1487
AciI CCGC 2 cut(s) 292, 986
AclWI GGATC 3 cut(s) 69, 1210, 1307
AcsI RAATTY 4 cut(s) 298, 1180, 1354, 1450
AcuI CTGAAG 3 cut(s) 657, 1104, 1248
AfaI GTAC 4 cut(s) 164, 400, 709, 1300
AfiI CCNNNNNNNGG 4 cut(s) 192, 193, 560, 1487
AflIII ACRYGT 1 cut(s) 1301
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 5 cut(s) 439, 1041, 1069, 1413, 1510
AhlI ACTAGT 1 cut(s) 704
AjnI CCWGG 1 cut(s) 1099
Alw21I GWGCWC 3 cut(s) 156, 232, 704
Alw26I GTCTC 3 cut(s) 92, 601, 1426
Alw44I GTGCAC 1 cut(s) 700
AlwI GGATC 3 cut(s) 69, 1210, 1307
AlwNI CAGNNNCTG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 1487
AoxI GGCC 1 cut(s) 1492
ApaLI GTGCAC 1 cut(s) 700
ApeKI GCWGC 5 cut(s) 92, 588, 668, 818, 884
ApoI RAATTY 4 cut(s) 298, 1180, 1354, 1450
ArsI GACNNNNNNTTYG 4 cut(s) 127, 159, 1172, 1204
AseI ATTAAT 1 cut(s) 765
AsiGI ACCGGT 1 cut(s) 553
Asp700I GAANNNNTTC 1 cut(s) 1408
AspS9I GGNCC 2 cut(s) 1092, 1485
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 2 cut(s) 1092, 1485
BaeGI GKGCMC 1 cut(s) 704
BanII GRGCYC 2 cut(s) 156, 232
BarI GAAGNNNNNNTAC 2 cut(s) 655, 687
BauI CACGAG 1 cut(s) 1020
Bbv12I GWGCWC 3 cut(s) 156, 232, 704
BbvI GCAGC 5 cut(s) 79, 600, 655, 805, 871
BccI CCATC 1 cut(s) 934
BceAI ACGGC 1 cut(s) 741
BciT130I CCWGG 1 cut(s) 1101
BclI TGATCA 1 cut(s) 949
BcoDI GTCTC 3 cut(s) 92, 601, 1426
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 6 cut(s) 45, 327, 705, 795, 842, 1082
BfmI CTRYAG 1 cut(s) 1473
BisI GCNGC 5 cut(s) 93, 589, 669, 819, 885
BlsI GCNGC 5 cut(s) 94, 590, 670, 820, 886
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 1 cut(s) 1101
Bme18I GGWCC 2 cut(s) 1092, 1485
BmgT120I GGNCC 2 cut(s) 1092, 1485
BmiI GGNNCC 2 cut(s) 924, 1516
BmrFI CCNGG 1 cut(s) 1101
BmsI GCATC 7 cut(s) 262, 265, 355, 706, 737, 1131, 1442
BpmI CTGGAG 2 cut(s) 862, 1122
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 218, 1481
Bsa29I ATCGAT 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 1481, 1518
BsaWI WCCGGW 2 cut(s) 553, 1487
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 193, 560, 1487
Bse118I RCCGGY 2 cut(s) 485, 553
Bse1I ACTGG 2 cut(s) 879, 1059
Bse3DI GCAATG 2 cut(s) 239, 454
BseAI TCCGGA 1 cut(s) 1487
BseBI CCWGG 1 cut(s) 1101
BseCI ATCGAT 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 1481, 1518
BseGI GGATG 5 cut(s) 300, 895, 1146, 1322, 1433
BseLI CCNNNNNNNGG 4 cut(s) 192, 193, 560, 1487
BseMI GCAATG 2 cut(s) 239, 454
BseMII CTCAG 4 cut(s) 6, 47, 87, 1155
BseNI ACTGG 2 cut(s) 879, 1059
BseRI GAGGAG 3 cut(s) 164, 221, 1296
BseSI GKGCMC 1 cut(s) 704
BseXI GCAGC 5 cut(s) 79, 600, 655, 805, 871
Bsh1285I CGRYCG 2 cut(s) 511, 558
BshFI GGCC 1 cut(s) 1494
BshTI ACCGGT 1 cut(s) 553
BshVI ATCGAT 1 cut(s) 139
BsiEI CGRYCG 2 cut(s) 511, 558
BsiHKAI GWGCWC 3 cut(s) 156, 232, 704
BsiSI CCGG 3 cut(s) 486, 554, 1488
BslI CCNNNNNNNGG 4 cut(s) 192, 193, 560, 1487
BsmAI GTCTC 3 cut(s) 92, 601, 1426
BsmBI CGTCTC 1 cut(s) 92
BsnI GGCC 1 cut(s) 1494
Bsp1286I GDGCHC 3 cut(s) 156, 232, 704
Bsp13I TCCGGA 1 cut(s) 1487
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 4 cut(s) 61, 949, 1215, 1312
BspACI CCGC 2 cut(s) 292, 986
BspANI GGCC 1 cut(s) 1494
BspCNI CTCAG 4 cut(s) 7, 46, 88, 1156
BspDI ATCGAT 1 cut(s) 139
BspEI TCCGGA 1 cut(s) 1487
BspLI GGNNCC 2 cut(s) 924, 1516
BspMAI CTGCAG 1 cut(s) 1477
BspPI GGATC 3 cut(s) 69, 1210, 1307
BsrDI GCAATG 2 cut(s) 239, 454
BsrFI RCCGGY 2 cut(s) 485, 553
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 879, 1059
BssAI RCCGGY 2 cut(s) 485, 553
BssECI CCNNGG 2 cut(s) 1481, 1518
BssMI GATC 4 cut(s) 61, 949, 1215, 1312
BssSI CACGAG 1 cut(s) 1020
BssT1I CCWWGG 1 cut(s) 1518
Bst2BI CACGAG 1 cut(s) 1020
Bst2UI CCWGG 1 cut(s) 1101
Bst4CI ACNGT 6 cut(s) 403, 472, 1238, 1298, 1429, 1482
Bst6I CTCTTC 1 cut(s) 1399
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 105, 280
BstDEI CTNAG 5 cut(s) 15, 33, 96, 657, 1164
BstDSI CCRYGG 1 cut(s) 1481
BstF5I GGATG 5 cut(s) 300, 895, 1146, 1322, 1433
BstKTI GATC 4 cut(s) 64, 952, 1218, 1315
BstMAI GTCTC 3 cut(s) 92, 601, 1426
BstMBI GATC 4 cut(s) 61, 949, 1215, 1312
BstMCI CGRYCG 2 cut(s) 511, 558
BstMWI GCNNNNNNNGC 6 cut(s) 236, 250, 365, 419, 725, 1398
BstNI CCWGG 1 cut(s) 1101
BstNSI RCATGY 1 cut(s) 1305
BstSCI CCNGG 1 cut(s) 1099
BstSFI CTRYAG 1 cut(s) 1473
BstSLI GKGCMC 1 cut(s) 704
BstV1I GCAGC 5 cut(s) 79, 600, 655, 805, 871
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
Bsu15I ATCGAT 1 cut(s) 139
BsuRI GGCC 1 cut(s) 1494
BsuTUI ATCGAT 1 cut(s) 139
BtgI CCRYGG 1 cut(s) 1481
BtsCI GGATG 5 cut(s) 300, 895, 1146, 1322, 1433
BtsIMutI CAGTG 3 cut(s) 408, 886, 1066
Cac8I GCNNGC 2 cut(s) 105, 280
CaiI CAGNNNCTG 1 cut(s) 362
Cfr10I RCCGGY 2 cut(s) 485, 553
Cfr13I GGNCC 2 cut(s) 1092, 1485
ClaI ATCGAT 1 cut(s) 139
CseI GACGC 2 cut(s) 109, 1326
Csp6I GTAC 4 cut(s) 163, 399, 708, 1299
CspAI ACCGGT 1 cut(s) 553
CviAII CATG 5 cut(s) 65, 304, 584, 1186, 1302
CviQI GTAC 4 cut(s) 163, 399, 708, 1299
DdeI CTNAG 5 cut(s) 15, 33, 96, 657, 1164
DpnI GATC 4 cut(s) 63, 951, 1217, 1314
DpnII GATC 4 cut(s) 61, 949, 1215, 1312
DraI TTTAAA 2 cut(s) 651, 1359
Eam1104I CTCTTC 1 cut(s) 1399
EarI CTCTTC 1 cut(s) 1399
EciI GGCGGA 1 cut(s) 1001
Ecl136II GAGCTC 2 cut(s) 154, 230
Eco130I CCWWGG 1 cut(s) 1518
Eco147I AGGCCT 1 cut(s) 1494
Eco24I GRGCYC 2 cut(s) 156, 232
Eco32I GATATC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 1092, 1485
Eco53kI GAGCTC 2 cut(s) 154, 230
Eco57I CTGAAG 3 cut(s) 657, 1104, 1248
EcoICRI GAGCTC 2 cut(s) 154, 230
EcoRI GAATTC 2 cut(s) 298, 1450
EcoRII CCWGG 1 cut(s) 1099
EcoRV GATATC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 1518
EcoT38I GRGCYC 2 cut(s) 156, 232
ErhI CCWWGG 1 cut(s) 1518
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 5 cut(s) 68, 307, 587, 1189, 1305
FatI CATG 5 cut(s) 64, 303, 583, 1185, 1301
FbaI TGATCA 1 cut(s) 949
FblI GTMKAC 2 cut(s) 507, 1006
Fnu4HI GCNGC 5 cut(s) 93, 589, 669, 819, 885
FokI GGATG 5 cut(s) 307, 882, 1153, 1309, 1420
FriOI GRGCYC 2 cut(s) 156, 232
Fsp4HI GCNGC 5 cut(s) 93, 589, 669, 819, 885
FspBI CTAG 6 cut(s) 45, 327, 705, 795, 842, 1082
GluI GCNGC 5 cut(s) 93, 589, 669, 819, 885
GsuI CTGGAG 2 cut(s) 862, 1122
HaeIII GGCC 1 cut(s) 1494
HapII CCGG 3 cut(s) 486, 554, 1488
HgaI GACGC 2 cut(s) 109, 1326
Hin1II CATG 5 cut(s) 68, 307, 587, 1189, 1305
HincII GTYRAC 5 cut(s) 26, 508, 1007, 1136, 1191
HindII GTYRAC 5 cut(s) 26, 508, 1007, 1136, 1191
HinfI GANTC 6 cut(s) 383, 431, 833, 912, 1033, 1409
HpaII CCGG 3 cut(s) 486, 554, 1488
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 6 cut(s) 26, 508, 702, 1007, 1136, 1191
Hpy188I TCNGA 9 cut(s) 250, 382, 601, 917, 1032, 1123, 1165, 1220, 1350
Hpy188III TCNNGA 8 cut(s) 35, 146, 257, 362, 1020, 1041, 1082, 1488
Hpy8I GTNNAC 6 cut(s) 26, 508, 702, 1007, 1136, 1191
HpyAV CCTTC 5 cut(s) 909, 1047, 1063, 1128, 1504
HpyCH4III ACNGT 6 cut(s) 403, 472, 1238, 1298, 1429, 1482
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 250, 365, 419, 725, 1398
HpyF3I CTNAG 5 cut(s) 15, 33, 96, 657, 1164
Hsp92II CATG 5 cut(s) 68, 307, 587, 1189, 1305
Kpn2I TCCGGA 1 cut(s) 1487
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 4 cut(s) 61, 949, 1215, 1312
LmnI GCTCC 4 cut(s) 151, 364, 881, 1242
Lsp1109I GCAGC 5 cut(s) 79, 600, 655, 805, 871
LweI GCATC 7 cut(s) 262, 265, 355, 706, 737, 1131, 1442
MaeI CTAG 6 cut(s) 45, 327, 705, 795, 842, 1082
MaeIII GTNAC 3 cut(s) 370, 472, 721
MalI GATC 4 cut(s) 63, 951, 1217, 1314
MboI GATC 4 cut(s) 61, 949, 1215, 1312
MboII GAAGA 7 cut(s) 96, 378, 513, 779, 782, 1416, 1459
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 3 cut(s) 156, 232, 704
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 675
MroI TCCGGA 1 cut(s) 1487
MroXI GAANNNNTTC 1 cut(s) 1408
MseI TTAA 5 cut(s) 650, 765, 1293, 1358, 1525
MslI CAYNNNNRTG 1 cut(s) 812
MspI CCGG 3 cut(s) 486, 554, 1488
MspR9I CCNGG 1 cut(s) 1101
MvaI CCWGG 1 cut(s) 1101
MwoI GCNNNNNNNGC 6 cut(s) 236, 250, 365, 419, 725, 1398
NdeII GATC 4 cut(s) 61, 949, 1215, 1312
NlaIII CATG 5 cut(s) 68, 307, 587, 1189, 1305
NlaIV GGNNCC 2 cut(s) 924, 1516
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 1305
PceI AGGCCT 1 cut(s) 1494
PciI ACATGT 1 cut(s) 1301
PcsI WCGNNNNNNNCGW 2 cut(s) 136, 1003
PdmI GAANNNNTTC 1 cut(s) 1408
PfeI GAWTC 5 cut(s) 383, 833, 912, 1033, 1409
PflFI GACNNNGTC 1 cut(s) 605
PfoI TCCNGGA 1 cut(s) 1099
PinAI ACCGGT 1 cut(s) 553
PkrI GCNGC 5 cut(s) 94, 590, 670, 820, 886
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 1 cut(s) 1301
PshBI ATTAAT 1 cut(s) 765
PsiI TTATAA 1 cut(s) 216
Psp124BI GAGCTC 2 cut(s) 156, 232
Psp6I CCWGG 1 cut(s) 1099
PspGI CCWGG 1 cut(s) 1099
PspN4I GGNNCC 2 cut(s) 924, 1516
PspPI GGNCC 2 cut(s) 1092, 1485
PstI CTGCAG 1 cut(s) 1477
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 1312
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 4 cut(s) 164, 400, 709, 1300
RsaNI GTAC 4 cut(s) 163, 399, 708, 1299
RseI CAYNNNNRTG 1 cut(s) 812
SacI GAGCTC 2 cut(s) 156, 232
SalI GTCGAC 2 cut(s) 506, 1005
SaqAI TTAA 5 cut(s) 650, 765, 1293, 1358, 1525
SatI GCNGC 5 cut(s) 93, 589, 669, 819, 885
Sau3AI GATC 4 cut(s) 61, 949, 1215, 1312
Sau96I GGNCC 2 cut(s) 1092, 1485
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 1101
SduI GDGCHC 3 cut(s) 156, 232, 704
SfaNI GCATC 7 cut(s) 262, 265, 355, 706, 737, 1131, 1442
SfcI CTRYAG 1 cut(s) 1473
SinI GGWCC 2 cut(s) 1092, 1485
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 2 cut(s) 233, 1496
SmoI CTYRAG 2 cut(s) 233, 1496
SpeI ACTAGT 1 cut(s) 704
SseBI AGGCCT 1 cut(s) 1494
SsiI CCGC 2 cut(s) 292, 986
SspI AATATT 1 cut(s) 1198
SspMI CTAG 6 cut(s) 45, 327, 705, 795, 842, 1082
SstI GAGCTC 2 cut(s) 156, 232
StuI AGGCCT 1 cut(s) 1494
StyD4I CCNGG 1 cut(s) 1099
StyI CCWWGG 1 cut(s) 1518
TaaI ACNGT 6 cut(s) 403, 472, 1238, 1298, 1429, 1482
TaqI TCGA 6 cut(s) 71, 139, 156, 170, 507, 1006
TaqII GACCGA 1 cut(s) 525
TatI WGTACW 4 cut(s) 162, 398, 707, 1298
TfiI GAWTC 5 cut(s) 383, 833, 912, 1033, 1409
Tru1I TTAA 5 cut(s) 650, 765, 1293, 1358, 1525
Tru9I TTAA 5 cut(s) 650, 765, 1293, 1358, 1525
TscAI CASTG 3 cut(s) 408, 886, 1066
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 5 cut(s) 92, 588, 668, 818, 884
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 311, 495, 1004
TspGWI ACGGA 2 cut(s) 526, 1153
TspRI CASTG 3 cut(s) 408, 886, 1066
Tth111I GACNNNGTC 1 cut(s) 605
VneI GTGCAC 1 cut(s) 700
VpaK11BI GGWCC 2 cut(s) 1092, 1485
VspI ATTAAT 1 cut(s) 765
XapI RAATTY 4 cut(s) 298, 1180, 1354, 1450
XbaI TCTAGA 1 cut(s) 1081
XceI RCATGY 1 cut(s) 1305
XmiI GTMKAC 2 cut(s) 507, 1006
XmnI GAANNNNTTC 1 cut(s) 1408
XspI CTAG 6 cut(s) 45, 327, 705, 795, 842, 1082
ZrmI AGTACT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.