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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g32010 FvH4_5g32010 |
| prunus_persica | Prupe.1G553900_v2.0.a1 Prupe.1G553900_v2.0.a1 Prupe.1G553900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0228011 |
| rosa_laevigata | RLG00000001596 |
| rosa_multiflora | Rmu_sc0015384.1_g000001 Rmu_sc0018857.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00231650 |
| rosa_rugosa | Rorug07G0244900 Rorug07G0245000 Rorug07G0245100 Rorug07G0245200 |
| rosa_samantha | Rh7AG398900 Rh7BG380300 Rh7CG417000 Rh7DG394500 |
| rosa_wichuraiana | Rw7G033160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 18, 772, 1865 |
| AccBSI | CCGCTC | 1 cut(s) | 1452 |
| AccII | CGCG | 1 cut(s) | 1439 |
| AccIII | TCCGGA | 1 cut(s) | 2359 |
| AciI | CCGC | 5 cut(s) | 291, 1439, 1452, 1470, 1961 |
| AclWI | GGATC | 9 cut(s) | 1059, 1072, 1140, 1838, 1886, 2195, 2215, 2289, 2302 |
| AcsI | RAATTY | 2 cut(s) | 1915, 2229 |
| AcuI | CTGAAG | 3 cut(s) | 54, 192, 1272 |
| AfaI | GTAC | 5 cut(s) | 211, 273, 637, 1492, 2245 |
| AfeI | AGCGCT | 1 cut(s) | 1480 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1862, 2366, 2495, 2527 |
| AflIII | ACRYGT | 2 cut(s) | 593, 1567 |
| AhlI | ACTAGT | 1 cut(s) | 761 |
| AjnI | CCWGG | 3 cut(s) | 897, 1308, 2070 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 29, 525, 557 |
| Alw21I | GWGCWC | 1 cut(s) | 388 |
| Alw26I | GTCTC | 3 cut(s) | 199, 1240, 1767 |
| Alw44I | GTGCAC | 1 cut(s) | 384 |
| AlwI | GGATC | 9 cut(s) | 1059, 1072, 1140, 1838, 1886, 2195, 2215, 2289, 2302 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1034, 1061, 1231 |
| Ama87I | CYCGRG | 1 cut(s) | 1869 |
| Aor13HI | TCCGGA | 1 cut(s) | 2359 |
| Aor51HI | AGCGCT | 1 cut(s) | 1480 |
| AoxI | GGCC | 3 cut(s) | 1853, 2265, 2324 |
| ApaI | GGGCCC | 1 cut(s) | 2269 |
| ApaLI | GTGCAC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 9 cut(s) | 467, 1075, 1352, 1394, 1551, 1595, 1624, 2021, 2531 |
| ApoI | RAATTY | 2 cut(s) | 1915, 2229 |
| AseI | ATTAAT | 2 cut(s) | 819, 1212 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 337, 2441 |
| AspLEI | GCGC | 2 cut(s) | 1439, 1481 |
| AspS9I | GGNCC | 3 cut(s) | 1854, 2265, 2266 |
| AsuC2I | CCSGG | 3 cut(s) | 1206, 1870, 1871 |
| AsuHPI | GGTGA | 2 cut(s) | 461, 1274 |
| AvaI | CYCGRG | 1 cut(s) | 1869 |
| BaeGI | GKGCMC | 3 cut(s) | 21, 388, 2269 |
| BamHI | GGATCC | 2 cut(s) | 1064, 2294 |
| BanI | GGYRCC | 3 cut(s) | 18, 772, 1865 |
| BanII | GRGCYC | 1 cut(s) | 2269 |
| BbsI | GAAGAC | 3 cut(s) | 12, 504, 1665 |
| Bbv12I | GWGCWC | 1 cut(s) | 388 |
| BbvCI | CCTCAGC | 1 cut(s) | 954 |
| BbvI | GCAGC | 9 cut(s) | 454, 1087, 1339, 1381, 1563, 1582, 1611, 2008, 2518 |
| BccI | CCATC | 6 cut(s) | 140, 362, 422, 994, 1761, 2493 |
| BceAI | ACGGC | 1 cut(s) | 1234 |
| BciT130I | CCWGG | 3 cut(s) | 899, 1310, 2072 |
| BciVI | GTATCC | 1 cut(s) | 676 |
| BcnI | CCSGG | 3 cut(s) | 1206, 1870, 1871 |
| BcoDI | GTCTC | 3 cut(s) | 199, 1240, 1767 |
| BcuI | ACTAGT | 1 cut(s) | 761 |
| BfaI | CTAG | 5 cut(s) | 555, 762, 1104, 1476, 2388 |
| BfmI | CTRYAG | 2 cut(s) | 468, 1827 |
| BfoI | RGCGCY | 1 cut(s) | 1482 |
| BfuI | GTATCC | 1 cut(s) | 676 |
| BisI | GCNGC | 9 cut(s) | 468, 1076, 1353, 1395, 1552, 1596, 1625, 2022, 2532 |
| BlsI | GCNGC | 9 cut(s) | 469, 1077, 1354, 1396, 1553, 1597, 1626, 2023, 2533 |
| Bme1390I | CCNGG | 6 cut(s) | 899, 1206, 1310, 1870, 1871, 2072 |
| BmeT110I | CYCGRG | 1 cut(s) | 1869 |
| BmgT120I | GGNCC | 3 cut(s) | 1854, 2265, 2266 |
| BmrFI | CCNGG | 6 cut(s) | 899, 1206, 1310, 1870, 1871, 2072 |
| BmsI | GCATC | 6 cut(s) | 269, 895, 1037, 1364, 1822, 2518 |
| BoxI | GACNNNNGTC | 2 cut(s) | 564, 1221 |
| BpiI | GAAGAC | 3 cut(s) | 12, 504, 1665 |
| BpmI | CTGGAG | 2 cut(s) | 347, 1253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 954 |
| BpuMI | CCSGG | 3 cut(s) | 1206, 1870, 1871 |
| BsaBI | GATNNNNATC | 2 cut(s) | 432, 1716 |
| BsaI | GGTCTC | 1 cut(s) | 1240 |
| BsaJI | CCNNGG | 3 cut(s) | 1389, 1869, 2070 |
| BsaWI | WCCGGW | 1 cut(s) | 2359 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2452, 2482 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1862, 2366, 2495, 2527 |
| Bse1I | ACTGG | 5 cut(s) | 264, 684, 915, 1236, 1856 |
| Bse3DI | GCAATG | 5 cut(s) | 503, 721, 1090, 1187, 2382 |
| Bse8I | GATNNNNATC | 2 cut(s) | 432, 1716 |
| BseAI | TCCGGA | 1 cut(s) | 2359 |
| BseBI | CCWGG | 3 cut(s) | 899, 1310, 2072 |
| BseDI | CCNNGG | 3 cut(s) | 1389, 1869, 2070 |
| BseGI | GGATG | 9 cut(s) | 155, 260, 479, 796, 907, 919, 1052, 1466, 2504 |
| BseJI | GATNNNNATC | 2 cut(s) | 432, 1716 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1862, 2366, 2495, 2527 |
| BseMI | GCAATG | 5 cut(s) | 503, 721, 1090, 1187, 2382 |
| BseMII | CTCAG | 7 cut(s) | 37, 498, 945, 1024, 1323, 1439, 1494 |
| BseNI | ACTGG | 5 cut(s) | 264, 684, 915, 1236, 1856 |
| BseRI | GAGGAG | 2 cut(s) | 961, 1187 |
| BseSI | GKGCMC | 3 cut(s) | 21, 388, 2269 |
| BseXI | GCAGC | 9 cut(s) | 454, 1087, 1339, 1381, 1563, 1582, 1611, 2008, 2518 |
| BseYI | CCCAGC | 2 cut(s) | 1642, 2303 |
| BsgI | GTGCAG | 2 cut(s) | 300, 876 |
| Bsh1236I | CGCG | 1 cut(s) | 1439 |
| BshFI | GGCC | 3 cut(s) | 1855, 2267, 2326 |
| BshNI | GGYRCC | 3 cut(s) | 18, 772, 1865 |
| BsiHKAI | GWGCWC | 1 cut(s) | 388 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1869 |
| BsiSI | CCGG | 4 cut(s) | 776, 1205, 1870, 2360 |
| BslFI | GGGAC | 3 cut(s) | 97, 817, 2516 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1862, 2366, 2495, 2527 |
| BsmAI | GTCTC | 3 cut(s) | 199, 1240, 1767 |
| BsmFI | GGGAC | 3 cut(s) | 97, 817, 2516 |
| BsmI | GAATGC | 1 cut(s) | 2400 |
| BsnI | GGCC | 3 cut(s) | 1855, 2267, 2326 |
| Bso31I | GGTCTC | 1 cut(s) | 1240 |
| BsoBI | CYCGRG | 1 cut(s) | 1869 |
| Bsp120I | GGGCCC | 1 cut(s) | 2265 |
| Bsp1286I | GDGCHC | 3 cut(s) | 21, 388, 2269 |
| Bsp13I | TCCGGA | 1 cut(s) | 2359 |
| Bsp1407I | TGTACA | 1 cut(s) | 209 |
| Bsp19I | CCATGG | 1 cut(s) | 1389 |
| BspACI | CCGC | 5 cut(s) | 291, 1439, 1452, 1470, 1961 |
| BspANI | GGCC | 3 cut(s) | 1855, 2267, 2326 |
| BspCNI | CTCAG | 7 cut(s) | 36, 499, 946, 1023, 1324, 1440, 1495 |
| BspEI | TCCGGA | 1 cut(s) | 2359 |
| BspFNI | CGCG | 1 cut(s) | 1439 |
| BspMAI | CTGCAG | 2 cut(s) | 472, 1831 |
| BspPI | GGATC | 9 cut(s) | 1059, 1072, 1140, 1838, 1886, 2195, 2215, 2289, 2302 |
| BspQI | GCTCTTC | 1 cut(s) | 648 |
| BspT107I | GGYRCC | 3 cut(s) | 18, 772, 1865 |
| BspTNI | GGTCTC | 1 cut(s) | 1240 |
| BsrBI | CCGCTC | 1 cut(s) | 1452 |
| BsrDI | GCAATG | 5 cut(s) | 503, 721, 1090, 1187, 2382 |
| BsrGI | TGTACA | 1 cut(s) | 209 |
| BsrI | ACTGG | 5 cut(s) | 264, 684, 915, 1236, 1856 |
| BssECI | CCNNGG | 3 cut(s) | 1389, 1869, 2070 |
| BssT1I | CCWWGG | 1 cut(s) | 1389 |
| Bst2UI | CCWGG | 3 cut(s) | 899, 1310, 2072 |
| Bst6I | CTCTTC | 5 cut(s) | 202, 648, 979, 1117, 2471 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 266 |
| BstAUI | TGTACA | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 3 cut(s) | 660, 1837, 2086 |
| BstDSI | CCRYGG | 1 cut(s) | 1389 |
| BstEII | GGTNACC | 1 cut(s) | 1262 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2525 |
| BstF5I | GGATG | 9 cut(s) | 155, 260, 479, 796, 907, 919, 1052, 1466, 2504 |
| BstFNI | CGCG | 1 cut(s) | 1439 |
| BstH2I | RGCGCY | 1 cut(s) | 1482 |
| BstHHI | GCGC | 2 cut(s) | 1439, 1481 |
| BstMAI | GTCTC | 3 cut(s) | 199, 1240, 1767 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 266, 1025, 1124, 1478, 2462 |
| BstNI | CCWGG | 3 cut(s) | 899, 1310, 2072 |
| BstNSI | RCATGY | 3 cut(s) | 597, 1571, 1839 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 564, 1221 |
| BstPI | GGTNACC | 1 cut(s) | 1262 |
| BstSCI | CCNGG | 6 cut(s) | 897, 1204, 1308, 1868, 1869, 2070 |
| BstSFI | CTRYAG | 2 cut(s) | 468, 1827 |
| BstSLI | GKGCMC | 3 cut(s) | 21, 388, 2269 |
| BstUI | CGCG | 1 cut(s) | 1439 |
| BstV1I | GCAGC | 9 cut(s) | 454, 1087, 1339, 1381, 1563, 1582, 1611, 2008, 2518 |
| BstV2I | GAAGAC | 3 cut(s) | 12, 504, 1665 |
| BstX2I | RGATCY | 4 cut(s) | 1064, 1132, 2200, 2294 |
| BstYI | RGATCY | 4 cut(s) | 1064, 1132, 2200, 2294 |
| BsuI | GTATCC | 1 cut(s) | 676 |
| BsuRI | GGCC | 3 cut(s) | 1855, 2267, 2326 |
| BtgI | CCRYGG | 1 cut(s) | 1389 |
| BtsCI | GGATG | 9 cut(s) | 155, 260, 479, 796, 907, 919, 1052, 1466, 2504 |
| BtsI | GCAGTG | 2 cut(s) | 370, 1085 |
| BtsIMutI | CAGTG | 9 cut(s) | 271, 370, 388, 716, 908, 1085, 1329, 1646, 1738 |
| Cac8I | GCNNGC | 3 cut(s) | 660, 1837, 2086 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1034, 1061, 1231 |
| CfoI | GCGC | 2 cut(s) | 1439, 1481 |
| Cfr13I | GGNCC | 3 cut(s) | 1854, 2265, 2266 |
| Cfr9I | CCCGGG | 1 cut(s) | 1869 |
| Csp6I | GTAC | 5 cut(s) | 210, 272, 636, 1491, 2244 |
| CviQI | GTAC | 5 cut(s) | 210, 272, 636, 1491, 2244 |
| DraI | TTTAAA | 1 cut(s) | 1809 |
| Eam1104I | CTCTTC | 5 cut(s) | 202, 648, 979, 1117, 2471 |
| EarI | CTCTTC | 5 cut(s) | 202, 648, 979, 1117, 2471 |
| EciI | GGCGGA | 1 cut(s) | 1459 |
| Eco130I | CCWWGG | 1 cut(s) | 1389 |
| Eco24I | GRGCYC | 1 cut(s) | 2269 |
| Eco31I | GGTCTC | 1 cut(s) | 1240 |
| Eco32I | GATATC | 1 cut(s) | 434 |
| Eco47III | AGCGCT | 1 cut(s) | 1480 |
| Eco57I | CTGAAG | 3 cut(s) | 54, 192, 1272 |
| Eco88I | CYCGRG | 1 cut(s) | 1869 |
| Eco91I | GGTNACC | 1 cut(s) | 1262 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2525 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2265, 2266 |
| EcoO65I | GGTNACC | 1 cut(s) | 1262 |
| EcoRII | CCWGG | 3 cut(s) | 897, 1308, 2070 |
| EcoRV | GATATC | 1 cut(s) | 434 |
| EcoT14I | CCWWGG | 1 cut(s) | 1389 |
| EcoT22I | ATGCAT | 2 cut(s) | 1837, 1841 |
| EcoT38I | GRGCYC | 1 cut(s) | 2269 |
| ErhI | CCWWGG | 1 cut(s) | 1389 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 958, 990, 2072, 2104, 2314, 2346 |
| FaqI | GGGAC | 3 cut(s) | 97, 817, 2516 |
| FauI | CCCGC | 2 cut(s) | 298, 1432 |
| Fnu4HI | GCNGC | 9 cut(s) | 468, 1076, 1353, 1395, 1552, 1596, 1625, 2022, 2532 |
| FokI | GGATG | 9 cut(s) | 162, 247, 466, 803, 914, 926, 1059, 1453, 2511 |
| FriOI | GRGCYC | 1 cut(s) | 2269 |
| Fsp4HI | GCNGC | 9 cut(s) | 468, 1076, 1353, 1395, 1552, 1596, 1625, 2022, 2532 |
| FspBI | CTAG | 5 cut(s) | 555, 762, 1104, 1476, 2388 |
| GlaI | GCGC | 2 cut(s) | 1438, 1480 |
| GluI | GCNGC | 9 cut(s) | 468, 1076, 1353, 1395, 1552, 1596, 1625, 2022, 2532 |
| GsaI | CCCAGC | 2 cut(s) | 1646, 2307 |
| GsuI | CTGGAG | 2 cut(s) | 347, 1253 |
| HaeII | RGCGCY | 1 cut(s) | 1482 |
| HaeIII | GGCC | 3 cut(s) | 1855, 2267, 2326 |
| HapII | CCGG | 4 cut(s) | 776, 1205, 1870, 2360 |
| HhaI | GCGC | 2 cut(s) | 1439, 1481 |
| Hin6I | GCGC | 2 cut(s) | 1437, 1479 |
| HinP1I | GCGC | 2 cut(s) | 1437, 1479 |
| HincII | GTYRAC | 1 cut(s) | 1146 |
| HindII | GTYRAC | 1 cut(s) | 1146 |
| HindIII | AAGCTT | 2 cut(s) | 546, 2086 |
| HinfI | GANTC | 6 cut(s) | 95, 509, 1022, 1031, 1670, 2504 |
| HpaII | CCGG | 4 cut(s) | 776, 1205, 1870, 2360 |
| HphI | GGTGA | 2 cut(s) | 461, 1274 |
| Hpy166II | GTNNAC | 4 cut(s) | 386, 1146, 1533, 2170 |
| Hpy8I | GTNNAC | 4 cut(s) | 386, 1146, 1533, 2170 |
| Hpy99I | CGWCG | 1 cut(s) | 1491 |
| HpyAV | CCTTC | 8 cut(s) | 29, 49, 167, 1037, 1247, 1856, 2122, 2475 |
| HpyCH4IV | ACGT | 1 cut(s) | 1489 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 266, 1025, 1124, 1478, 2462 |
| HpySE526I | ACGT | 1 cut(s) | 1489 |
| HspAI | GCGC | 2 cut(s) | 1437, 1479 |
| Kpn2I | TCCGGA | 1 cut(s) | 2359 |
| LguI | GCTCTTC | 1 cut(s) | 648 |
| LmnI | GCTCC | 2 cut(s) | 974, 1234 |
| Lsp1109I | GCAGC | 9 cut(s) | 454, 1087, 1339, 1381, 1563, 1582, 1611, 2008, 2518 |
| LweI | GCATC | 6 cut(s) | 269, 895, 1037, 1364, 1822, 2518 |
| MaeI | CTAG | 5 cut(s) | 555, 762, 1104, 1476, 2388 |
| MaeII | ACGT | 1 cut(s) | 1489 |
| MaeIII | GTNAC | 5 cut(s) | 92, 764, 1262, 2065, 2411 |
| MbiI | CCGCTC | 1 cut(s) | 1452 |
| MfeI | CAATTG | 1 cut(s) | 1757 |
| MflI | RGATCY | 4 cut(s) | 1064, 1132, 2200, 2294 |
| MhlI | GDGCHC | 3 cut(s) | 21, 388, 2269 |
| MlyI | GAGTC | 5 cut(s) | 89, 518, 1025, 1679, 2498 |
| MmeI | TCCRAC | 4 cut(s) | 324, 390, 546, 1436 |
| Mph1103I | ATGCAT | 2 cut(s) | 1837, 1841 |
| MroI | TCCGGA | 1 cut(s) | 2359 |
| MroXI | GAANNNNTTC | 2 cut(s) | 337, 2441 |
| MspI | CCGG | 4 cut(s) | 776, 1205, 1870, 2360 |
| MspR9I | CCNGG | 6 cut(s) | 899, 1206, 1310, 1870, 1871, 2072 |
| MunI | CAATTG | 1 cut(s) | 1757 |
| Mva1269I | GAATGC | 1 cut(s) | 2400 |
| MvaI | CCWGG | 3 cut(s) | 899, 1310, 2072 |
| MvnI | CGCG | 1 cut(s) | 1439 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 266, 1025, 1124, 1478, 2462 |
| NciI | CCSGG | 3 cut(s) | 1206, 1870, 1871 |
| NcoI | CCATGG | 1 cut(s) | 1389 |
| NmuCI | GTSAC | 3 cut(s) | 92, 764, 1262 |
| NsiI | ATGCAT | 2 cut(s) | 1837, 1841 |
| NspI | RCATGY | 3 cut(s) | 597, 1571, 1839 |
| PaeI | GCATGC | 1 cut(s) | 1839 |
| PciI | ACATGT | 2 cut(s) | 593, 1567 |
| PciSI | GCTCTTC | 1 cut(s) | 648 |
| PctI | GAATGC | 1 cut(s) | 2400 |
| PdmI | GAANNNNTTC | 2 cut(s) | 337, 2441 |
| PfeI | GAWTC | 1 cut(s) | 1022 |
| PfoI | TCCNGGA | 2 cut(s) | 1204, 1308 |
| PkrI | GCNGC | 9 cut(s) | 469, 1077, 1354, 1396, 1553, 1597, 1626, 2023, 2533 |
| PleI | GAGTC | 5 cut(s) | 89, 517, 1025, 1678, 2498 |
| PpsI | GAGTC | 5 cut(s) | 89, 517, 1025, 1678, 2498 |
| PscI | ACATGT | 2 cut(s) | 593, 1567 |
| PshAI | GACNNNNGTC | 2 cut(s) | 564, 1221 |
| PshBI | ATTAAT | 2 cut(s) | 819, 1212 |
| Psp6I | CCWGG | 3 cut(s) | 897, 1308, 2070 |
| PspEI | GGTNACC | 1 cut(s) | 1262 |
| PspFI | CCCAGC | 2 cut(s) | 1642, 2303 |
| PspGI | CCWGG | 3 cut(s) | 897, 1308, 2070 |
| PspOMI | GGGCCC | 1 cut(s) | 2265 |
| PspPI | GGNCC | 3 cut(s) | 1854, 2265, 2266 |
| PstI | CTGCAG | 2 cut(s) | 472, 1831 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1034, 1061, 1231 |
| PsuI | RGATCY | 4 cut(s) | 1064, 1132, 2200, 2294 |
| RsaI | GTAC | 5 cut(s) | 211, 273, 637, 1492, 2245 |
| RsaNI | GTAC | 5 cut(s) | 210, 272, 636, 1491, 2244 |
| SapI | GCTCTTC | 1 cut(s) | 648 |
| SatI | GCNGC | 9 cut(s) | 468, 1076, 1353, 1395, 1552, 1596, 1625, 2022, 2532 |
| Sau96I | GGNCC | 3 cut(s) | 1854, 2265, 2266 |
| SchI | GAGTC | 5 cut(s) | 89, 518, 1025, 1679, 2498 |
| ScrFI | CCNGG | 6 cut(s) | 899, 1206, 1310, 1870, 1871, 2072 |
| SduI | GDGCHC | 3 cut(s) | 21, 388, 2269 |
| SfaNI | GCATC | 6 cut(s) | 269, 895, 1037, 1364, 1822, 2518 |
| SfcI | CTRYAG | 2 cut(s) | 468, 1827 |
| SmaI | CCCGGG | 1 cut(s) | 1871 |
| SpeI | ACTAGT | 1 cut(s) | 761 |
| SphI | GCATGC | 1 cut(s) | 1839 |
| SsiI | CCGC | 5 cut(s) | 291, 1439, 1452, 1470, 1961 |
| SspI | AATATT | 2 cut(s) | 649, 817 |
| SspMI | CTAG | 5 cut(s) | 555, 762, 1104, 1476, 2388 |
| StyD4I | CCNGG | 6 cut(s) | 897, 1204, 1308, 1868, 1869, 2070 |
| StyI | CCWWGG | 1 cut(s) | 1389 |
| TaiI | ACGT | 1 cut(s) | 1492 |
| TaqI | TCGA | 2 cut(s) | 1376, 1486 |
| TatI | WGTACW | 2 cut(s) | 209, 635 |
| TfiI | GAWTC | 1 cut(s) | 1022 |
| TscAI | CASTG | 9 cut(s) | 271, 370, 388, 716, 915, 1085, 1336, 1653, 1738 |
| TseFI | GTSAC | 3 cut(s) | 92, 764, 1262 |
| TseI | GCWGC | 9 cut(s) | 467, 1075, 1352, 1394, 1551, 1595, 1624, 2021, 2531 |
| Tsp45I | GTSAC | 3 cut(s) | 92, 764, 1262 |
| TspMI | CCCGGG | 1 cut(s) | 1869 |
| TspRI | CASTG | 9 cut(s) | 271, 370, 388, 716, 915, 1085, 1336, 1653, 1738 |
| VneI | GTGCAC | 1 cut(s) | 384 |
| VspI | ATTAAT | 2 cut(s) | 819, 1212 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2525 |
| XapI | RAATTY | 2 cut(s) | 1915, 2229 |
| XceI | RCATGY | 3 cut(s) | 597, 1571, 1839 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 143, 2496 |
| XmaI | CCCGGG | 1 cut(s) | 1869 |
| XmnI | GAANNNNTTC | 2 cut(s) | 337, 2441 |
| XspI | CTAG | 5 cut(s) | 555, 762, 1104, 1476, 2388 |
| Zsp2I | ATGCAT | 2 cut(s) | 1837, 1841 |