Rorug07G0245000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012628
Physical Location & Seq
Forward (+)
22628313 .. 22630339
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0245000.1

Sequence Viewer

Length: 720 bp
ATGAAATTATCTGTTCTCATCCGAACCGGTTCCATTGGTCTCTCCGGCTCTCCCAGAGTCTCCCTCTCGCGAACCGACTCGCTTTCCGGCGTCTTGTCCGGCGAGAAGATCAGCAACGTCGCCACGTCTCCGAGGATTTGCCTCCACTTGGACGTCAACCGCAGCCGCGACAAGGACACTATTCGGCGAGCTGTATCCGAGAGCAACATTCTACGATCGGACTCCGGTGAAGCGAGGTATATCCCGTCCGGAAGCAGGTCGCCGGGAAGTGGAATTCCGGAAGAGGAGATGGAAAGCAAAACGGTGACGATCGAAAGAGAAGAGCGGAGAAAGATGGTAGAGTATTATCAGGAGATGCTCAAGTCTAATCCGAGTGATCCTCTGCTGCTCAGAAACTACGGTCAATTCCTGCACGAGGTGGAGAAGGATATGGTGCGAGCTGAGGAGTGCTATTGCAGAGCCATATTGGCGAGTCCCGGAGACGGCGAGTTGTTGTCGCTGTACGCGAAGCTGATATGGGAGAGTCAGAGGGATAAGGATCGGGCCAATTCTTACTTTAACCAGGCTGTTTCGGCTTCACCCAACAATTGCATGGTTTTGGGATCCTTTGCGAGCTTCATGTGGGAAGTAGAGGAAGATGAAGAAGACGATGAAGAAATCAACAGTAATAGTACAACTGCTCAAGTCTCATCAGCAGCTCAGCTTGTTCCAGCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.6

Weight (kDa)

4.9

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TmcB PF25474 111 - 154 1.3e-06 TmcB, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 325
AccII CGCG 3 cut(s) 70, 168, 506
AccIII TCCGGA 2 cut(s) 248, 277
AciI CCGC 3 cut(s) 160, 166, 325
AclWI GGATC 4 cut(s) 371, 546, 597, 610
AcsI RAATTY 1 cut(s) 273
AcyI GRCGYC 2 cut(s) 90, 153
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 2 cut(s) 503, 673
AfiI CCNNNNNNNGG 6 cut(s) 148, 172, 255, 269, 415, 482
AgeI ACCGGT 1 cut(s) 26
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 6 cut(s) 191, 440, 511, 615, 698, 703
AluI AGCT 6 cut(s) 191, 440, 511, 615, 698, 703
Alw26I GTCTC 5 cut(s) 44, 64, 132, 474, 691
AlwI GGATC 4 cut(s) 371, 546, 597, 610
Aor13HI TCCGGA 2 cut(s) 248, 277
AoxI GGCC 1 cut(s) 543
ApeKI GCWGC 3 cut(s) 162, 385, 695
ApoI RAATTY 1 cut(s) 273
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 543
AsuC2I CCSGG 2 cut(s) 264, 477
AsuHPI GGTGA 3 cut(s) 239, 316, 570
BamHI GGATCC 1 cut(s) 602
BauI CACGAG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 174, 372, 707
BccI CCATC 2 cut(s) 283, 328
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 563
BciVI GTATCC 1 cut(s) 205
BcnI CCSGG 2 cut(s) 264, 477
BcoDI GTCTC 5 cut(s) 44, 64, 132, 474, 691
BfuAI ACCTGC 1 cut(s) 246
BfuI GTATCC 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 4 cut(s) 163, 166, 386, 696
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 4 cut(s) 164, 167, 387, 697
Bme1390I CCNGG 3 cut(s) 264, 477, 563
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 543
BmiI GGNNCC 2 cut(s) 31, 604
BmrFI CCNGG 3 cut(s) 264, 477, 563
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 1 cut(s) 651
BplI GAGNNNNNCTC 4 cut(s) 48, 80, 364, 396
Bpu10I CCTNAGC 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 344, 666
BpuMI CCSGG 2 cut(s) 264, 477
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 2 cut(s) 90, 153
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 131
BsaWI WCCGGW 4 cut(s) 26, 224, 248, 277
Bsc4I CCNNNNNNNGG 6 cut(s) 148, 172, 255, 269, 415, 482
Bse118I RCCGGY 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 537
BseAI TCCGGA 2 cut(s) 248, 277
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 6 cut(s) 148, 172, 255, 269, 415, 482
BseMII CTCAG 3 cut(s) 403, 432, 713
BseRI GAGGAG 2 cut(s) 299, 458
BseXI GCAGC 3 cut(s) 174, 372, 707
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 3 cut(s) 70, 168, 506
Bsh1285I CGRYCG 2 cut(s) 218, 312
BshFI GGCC 1 cut(s) 545
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 218, 312
BsiSI CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 6 cut(s) 148, 172, 255, 269, 415, 482
BsmAI GTCTC 5 cut(s) 44, 64, 132, 474, 691
BsmBI CGTCTC 2 cut(s) 132, 474
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 1 cut(s) 545
Bso31I GGTCTC 1 cut(s) 44
Bsp13I TCCGGA 2 cut(s) 248, 277
Bsp143I GATC 6 cut(s) 108, 215, 309, 376, 538, 602
Bsp1720I GCTNAGC 1 cut(s) 699
Bsp68I TCGCGA 1 cut(s) 70
BspACI CCGC 3 cut(s) 160, 166, 325
BspANI GGCC 1 cut(s) 545
BspCNI CTCAG 3 cut(s) 402, 433, 712
BspEI TCCGGA 2 cut(s) 248, 277
BspFNI CGCG 3 cut(s) 70, 168, 506
BspLI GGNNCC 2 cut(s) 31, 604
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 4 cut(s) 371, 546, 597, 610
BspQI GCTCTTC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 325
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 131
BssMI GATC 6 cut(s) 108, 215, 309, 376, 538, 602
BssNI GRCGYC 2 cut(s) 90, 153
BssSI CACGAG 1 cut(s) 413
Bst2BI CACGAG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 3 cut(s) 304, 401, 665
Bst6I CTCTTC 2 cut(s) 276, 315
BstACI GRCGYC 2 cut(s) 90, 153
BstC8I GCNNGC 3 cut(s) 189, 438, 613
BstDEI CTNAG 3 cut(s) 389, 441, 699
BstENI CCTNNNNNAGG 1 cut(s) 413
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 3 cut(s) 70, 168, 506
BstKTI GATC 6 cut(s) 111, 218, 312, 379, 541, 605
BstMAI GTCTC 5 cut(s) 44, 64, 132, 474, 691
BstMBI GATC 6 cut(s) 108, 215, 309, 376, 538, 602
BstMCI CGRYCG 2 cut(s) 218, 312
BstMWI GCNNNNNNNGC 2 cut(s) 467, 572
BstNI CCWGG 1 cut(s) 563
BstSCI CCNGG 3 cut(s) 262, 475, 561
BstUI CGCG 3 cut(s) 70, 168, 506
BstV1I GCAGC 3 cut(s) 174, 372, 707
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 602
BstYI RGATCY 1 cut(s) 602
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 545
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 18
BtuMI TCGCGA 1 cut(s) 70
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 189, 438, 613
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 543
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 502, 672
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 2 cut(s) 592, 619
CviQI GTAC 2 cut(s) 502, 672
DdeI CTNAG 3 cut(s) 389, 441, 699
DpnI GATC 6 cut(s) 110, 217, 311, 378, 540, 604
DpnII GATC 6 cut(s) 108, 215, 309, 376, 538, 602
DraIII CACNNNGTG 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 276, 315
EarI CTCTTC 2 cut(s) 276, 315
Eco31I GGTCTC 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 561
Esp3I CGTCTC 2 cut(s) 132, 474
FaeI CATG 2 cut(s) 595, 622
FaiI YATR 6 cut(s) 240, 431, 464, 517, 593, 620
FaqI GGGAC 1 cut(s) 459
FatI CATG 2 cut(s) 591, 618
Fnu4HI GCNGC 4 cut(s) 163, 166, 386, 696
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 4 cut(s) 163, 166, 386, 696
GluI GCNGC 4 cut(s) 163, 166, 386, 696
HaeIII GGCC 1 cut(s) 545
HapII CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
HgaI GACGC 1 cut(s) 79
Hin1I GRCGYC 2 cut(s) 90, 153
Hin1II CATG 2 cut(s) 595, 622
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 5 cut(s) 57, 77, 221, 472, 523
HpaII CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
HphI GGTGA 3 cut(s) 239, 316, 570
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 7 cut(s) 23, 132, 199, 220, 372, 392, 528
Hpy188III TCNNGA 4 cut(s) 69, 249, 278, 350
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 3 cut(s) 304, 401, 665
HpyCH4IV ACGT 3 cut(s) 117, 125, 153
HpyCH4V TGCA 3 cut(s) 412, 456, 591
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 572
HpyF3I CTNAG 3 cut(s) 389, 441, 699
HpySE526I ACGT 3 cut(s) 117, 125, 153
Hsp92I GRCGYC 2 cut(s) 90, 153
Hsp92II CATG 2 cut(s) 595, 622
Kpn2I TCCGGA 2 cut(s) 248, 277
Kzo9I GATC 6 cut(s) 108, 215, 309, 376, 538, 602
LguI GCTCTTC 1 cut(s) 315
Lsp1109I GCAGC 3 cut(s) 174, 372, 707
LweI GCATC 1 cut(s) 345
MaeII ACGT 3 cut(s) 117, 125, 153
MaeIII GTNAC 1 cut(s) 304
MalI GATC 6 cut(s) 110, 217, 311, 378, 540, 604
MbiI CCGCTC 1 cut(s) 325
MboI GATC 6 cut(s) 108, 215, 309, 376, 538, 602
MboII GAAGA 7 cut(s) 118, 293, 332, 647, 653, 656, 665
MfeI CAATTG 1 cut(s) 586
MflI RGATCY 1 cut(s) 602
MluCI AATT 5 cut(s) 5, 273, 404, 547, 586
MlyI GAGTC 5 cut(s) 66, 71, 215, 481, 532
MroI TCCGGA 2 cut(s) 248, 277
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 1 cut(s) 558
MspI CCGG 9 cut(s) 27, 45, 87, 99, 225, 249, 263, 278, 477
MspR9I CCNGG 3 cut(s) 264, 477, 563
MunI CAATTG 1 cut(s) 586
MvaI CCWGG 1 cut(s) 563
MvnI CGCG 3 cut(s) 70, 168, 506
MwoI GCNNNNNNNGC 2 cut(s) 467, 572
NciI CCSGG 2 cut(s) 264, 477
NdeII GATC 6 cut(s) 108, 215, 309, 376, 538, 602
NlaIII CATG 2 cut(s) 595, 622
NlaIV GGNNCC 2 cut(s) 31, 604
NmuCI GTSAC 1 cut(s) 304
NruI TCGCGA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PdmI GAANNNNTTC 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 475
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 4 cut(s) 164, 167, 387, 697
Ple19I CGATCG 2 cut(s) 218, 312
PleI GAGTC 5 cut(s) 65, 71, 215, 480, 531
PpsI GAGTC 5 cut(s) 65, 71, 215, 480, 531
Psp6I CCWGG 1 cut(s) 561
PspGI CCWGG 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 31, 604
PspPI GGNCC 1 cut(s) 543
PsuI RGATCY 1 cut(s) 602
PvuI CGATCG 2 cut(s) 218, 312
RruI TCGCGA 1 cut(s) 70
RsaI GTAC 2 cut(s) 503, 673
RsaNI GTAC 2 cut(s) 502, 672
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 4 cut(s) 163, 166, 386, 696
Sau3AI GATC 6 cut(s) 108, 215, 309, 376, 538, 602
Sau96I GGNCC 1 cut(s) 543
SchI GAGTC 5 cut(s) 66, 71, 215, 481, 532
ScrFI CCNGG 3 cut(s) 264, 477, 563
SfaNI GCATC 1 cut(s) 345
SmlI CTYRAG 2 cut(s) 359, 681
SmoI CTYRAG 2 cut(s) 359, 681
Sse9I AATT 5 cut(s) 5, 273, 404, 547, 586
SsiI CCGC 3 cut(s) 160, 166, 325
StyD4I CCNGG 3 cut(s) 262, 475, 561
TaaI ACNGT 3 cut(s) 304, 401, 665
TaiI ACGT 3 cut(s) 120, 128, 156
TaqI TCGA 1 cut(s) 312
TasI AATT 5 cut(s) 5, 273, 404, 547, 586
TatI WGTACW 1 cut(s) 671
TauI GCSGC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 162, 385, 695
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 4 cut(s) 17, 607, 654, 666
XagI CCTNNNNNAGG 1 cut(s) 413
XapI RAATTY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 28
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.