Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012628

Physical Location & Seq

Genomic Coordinates Forward (+)

52426439 .. 52429069

Gene Structure 2631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG398900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2631 bp

ATGGAAGACAATGTTGGGCACCTTGGTTCTCCCGAAGGGAAAAGTCATTTAGCAAAGGCAAAGAGCTTATCTGATTGTCTTGGGATATCAAGTGATGCTATTGTTGAAATAGAGAAGGGAGTCCATATATCTGACCATGAAATTGATGGTTCCAAAGATGAAAATGTGCCAGAAAGGGTAGGGATTGGTCATTTCTCTTCGACTGGTTGTACAAAGGATGATAATTTGAAACAACCATCTTCCGTGATTTCTACTGTCAGAAATTCAATACTTGAGGGAGACATTCATGCTGAAGGAACTTCCAGAGTAACGTCATGTCGTAATGGACTTGATAATAATGAGGAGAGTGAAGCTTCTGCACCTTTTACGGTAGGAAACCCTTCTGTAAAGAAAAGTTCCGTGAAAAGTGATGTTTGCTCAGACAGTGGACAACCCAGTCAATCAAAAGTTGATGGTTTTGTAGATGGGAAAATGGATGGATATCCACCAAGCGTCGGTGAAATTGAAGTCAAGTCTTCAGTGCAGACGACCTTCCATGATAAGCAATGTAAATCCGAGTCTTCTTCTTCCAACTCAGCACAAGTCACTCTTCCAGCTTCTTCAAAGGATAGCTGTCAGGAGATGTCAGTCTGCAAGAGCTCATATGAGAATATCACACCTAGTGCCGTAGACACTTCAACTTGTACAAACTTTAAGCTTGAACAGCCTGCATATAGAAGTTTAGTACCAGATATGGCCGTGCATGTGCCAAAATATCAGCTGGATGCTACCATGGTTTCATCTGAGGAACAATGCAATGACAATAAAGCTTCAGAGCCAATTGATAATGTCAGAACAAGGGGTAGCGGTAAGGTGCTTGGTTTGACCCCTGTTAATAGATGGGTGAGTGGAGAGAATATTAATCATTTGAAGTCTGCTGTCCCTAAGAAGAAAATTACAGAGCGTTATAATAAAATTAGATCAGAGACTTGCTATGACCTGGTTGATGATGATGCACTTGAGGTGGCTTGGAGAGTTGCAAAAGAAGTAGAGCAGGAGGTTGAGGCTTCAGGAAGCTCCTCTTCAATACCAGGGAGAAGTAGCAAGGTGGTTCATCTCAGCTCCGTGGATTCAGTAGGTTCTCATAGAGAAGGCTGCTTAACAGAAAGTGGTTCTATACACCAGAAGTGCAATGAGTCTGATAGTTTCTGTTCCACTAAAGAGACTATGGATATAAAACCGGTGACAAAGAAGGAACAGTTGTCTTTGGATGTCAAAGAGCCGGTTCAAGGCTTGGTCCCTGGAACTAGTGATGGCTGTCAGAGGCAGGGATCATCCAGCTTTGCTACTAAAGTTGAAGGTGTAGCTGCCAGTAACCAAACTTCTCATGTTTTTGGTATTGATCTTAATGAAGATATCCTGGAAAGTGAAGAAGAGTATCCTCAGAAGTCCATCAAAGAAACTGTATCTCTTCTTGAAAATGTGTCAAAGCCAATACCTGTTCTGGCTAAATCTGGAATTCCATTGTGCTTACCTGTGCCACAATTTCAGAGTGAATGGGACCTAGGTGGTTGGAGGGGTTCAGCTGCAACTAGTGCTTTTAAACCAACTTCTTTTTCTGAGAGTTGTAATAGAAATGCATTGTCGACAAATGACACTAATTGCAGCTCGAACTATTCACATGTTAAAGGGATTGACCTCAATGTTGCTGCTGCTGGTGCTGAGTTTGATGTTGAATTACCCTCCAAGAAACCTATCCCAGCACTGTCTGGTAATTATTCAAAAGATTCATCTGTTGAAGTGAATTCAAGACGAGCAAGGATGCTTGACATTGATCTCAACTGTGTTAGTGAAAATGGTGACAGCTCCCGACAATTGTCTCCACCAGCTTCTGTTAGGGATTTTGATTTGAATGACAACCTAACTTCTGCAGATGCATGCATTGGTCCGTACCAGACATGTGTAGGCTCTCTAGGCTTGAGAAATGCGGATTTAGATGATCCAGCGGTCTCTTCTGTGGAATATTCAAGACAATCAGACTGTAAAACTATCAGATCTTCATGTTCTCAGGACTTGAGTTCAAGGGAGGGCTTTAGTCATAATCATGACAAACCCTTTCTCGTTGCTGCAACCAATATGGTTCCCTCAAATGAACAACTGCAGAGGATGGCTGCCTTGCAACAGAAGGTCGCCTTTTCACCACCACCACCTCACGCCTTTCTCTATAATAATGGATTCTGCATTGACCCGAACAACAGCTTATCCCCAACTGTTTACCCTCCTTCCTTCCTTCCATATATGACAGATCCACGTGCAACCACCGTCATCCCACAATATTTTGGTTCTGGTGCTGTTCCGGTGTTTCCGATGGTCCCACATCTAATGGGGGTTCCTCATGCATCATCCCCTAATGACATTGCTTTCATCAGGCCAACTTTTGATCTAAACATGGGAGCAAATTCTTTGGAGAATGGGAGCAGGGGGATGAATGCTAGACAACTTTCTATTCCTGTAAGTGATGCAATTATGGAAGAACAAATGAAATCTTTCCAACAAGTTGGTTTGACTGCTGTACCCATGAAGAGGAGGGAGCCAGATGGGGGATGGGACTCCCATCAGCTTTGCTTTAGACAGGCCGCTTCTTGGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

876

Amino Acids

94.5

Weight (kDa)

5.15

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012628)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32010 FvH4_5g32010
prunus_persica	Prupe.1G553900_v2.0.a1 Prupe.1G553900_v2.0.a1 Prupe.1G553900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0228011
rosa_laevigata	RLG00000001596
rosa_multiflora	Rmu_sc0015384.1_g000001 Rmu_sc0018857.1_g000005
rosa_roxburghii	Rroxscaffold_3G00231650
rosa_rugosa	Rorug07G0244900 Rorug07G0245000 Rorug07G0245100 Rorug07G0245200
rosa_samantha	Rh7AG398900 Rh7BG380300 Rh7CG417000 Rh7DG394500
rosa_wichuraiana	Rw7G033160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AasI	GACNNNNNNGTC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	18
AccI	GTMKAC	2 cut(s)	669, 1625
AciI	CCGC	4 cut(s)	846, 1967, 1985, 2616
AclWI	GGATC	3 cut(s)	1318, 1973, 2279
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	4 cut(s)	262, 1497, 1783, 2437
AcuI	CTGAAG	4 cut(s)	312, 501, 795, 1032
AcvI	CACGTG	1 cut(s)	2291
AdeI	CACNNNGTG	1 cut(s)	662
AfaI	GTAC	5 cut(s)	211, 685, 726, 1931, 2553
AfiI	CCNNNNNNNGG	5 cut(s)	494, 1268, 2562, 2579, 2622
AflIII	ACRYGT	2 cut(s)	1660, 1937
AgeI	ACCGGT	1 cut(s)	1219
AhlI	ACTAGT	2 cut(s)	1286, 1571
AjnI	CCWGG	4 cut(s)	978, 1069, 1279, 1398
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 1579, 1611
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	5 cut(s)	273, 959, 1196, 1863, 1993
AlwI	GGATC	3 cut(s)	1318, 1973, 2279
AlwNI	CAGNNNCTG	1 cut(s)	1871
AoxI	GGCC	3 cut(s)	735, 2408, 2613
ApeKI	GCWGC	8 cut(s)	1134, 1346, 1565, 1644, 1688, 1691, 2105, 2150
ApoI	RAATTY	4 cut(s)	262, 1497, 1783, 2437
AseI	ATTAAT	1 cut(s)	900
AsiGI	ACCGGT	1 cut(s)	1219
Asp700I	GAANNNNTTC	2 cut(s)	379, 2525
AspA2I	CCTAGG	1 cut(s)	1543
AspS9I	GGNCC	4 cut(s)	1276, 1540, 1925, 2350
AsuHPI	GGTGA	5 cut(s)	509, 895, 1234, 1850, 2169
AvaII	GGWCC	4 cut(s)	1276, 1540, 1925, 2350
AvrII	CCTAGG	1 cut(s)	1543
BaeGI	GKGCMC	1 cut(s)	21
BaeI	ACNNNNGTAYC	2 cut(s)	2535, 2568
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	641
BarI	GAAGNNNNNNTAC	2 cut(s)	1345, 1377
BbrPI	CACGTG	1 cut(s)	2291
BbsI	GAAGAC	3 cut(s)	12, 507, 552
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	8 cut(s)	1121, 1333, 1552, 1656, 1675, 1678, 2092, 2137
BceAI	ACGGC	2 cut(s)	650, 722
BciT130I	CCWGG	4 cut(s)	980, 1071, 1281, 1400
BciVI	GTATCC	1 cut(s)	1428
BcoDI	GTCTC	5 cut(s)	273, 959, 1196, 1863, 1993
BcuI	ACTAGT	2 cut(s)	1286, 1571
BfaI	CTAG	6 cut(s)	660, 1287, 1544, 1572, 1952, 2472
BfmI	CTRYAG	2 cut(s)	1908, 2138
BfuI	GTATCC	1 cut(s)	1428
BglII	AGATCT	1 cut(s)	2033
BisI	GCNGC	9 cut(s)	1135, 1347, 1566, 1645, 1689, 1692, 2106, 2151, 2616
BlnI	CCTAGG	1 cut(s)	1543
BlsI	GCNGC	9 cut(s)	1136, 1348, 1567, 1646, 1690, 1693, 2107, 2152, 2617
Bme1390I	CCNGG	4 cut(s)	980, 1071, 1281, 1400
Bme18I	GGWCC	4 cut(s)	1276, 1540, 1925, 2350
BmgT120I	GGNCC	4 cut(s)	1276, 1540, 1925, 2350
BmiI	GGNNCC	8 cut(s)	20, 151, 1278, 1541, 2121, 2352, 2370, 2571
BmrFI	CCNGG	4 cut(s)	980, 1071, 1281, 1400
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	7 cut(s)	85, 754, 982, 1791, 1903, 2387, 2488
BmuI	ACTGGG	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	1855
BpiI	GAAGAC	3 cut(s)	12, 507, 552
BpuEI	CTTGAG	4 cut(s)	293, 1019, 1978, 2074
BsaAI	YACGTR	1 cut(s)	2291
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	1993
BsaJI	CCNNGG	6 cut(s)	22, 771, 1070, 1104, 1279, 1543
BsaWI	WCCGGW	2 cut(s)	1219, 2335
Bsc4I	CCNNNNNNNGG	5 cut(s)	494, 1268, 2562, 2579, 2622
Bse118I	RCCGGY	2 cut(s)	1219, 1261
Bse1I	ACTGG	3 cut(s)	208, 435, 1350
Bse3DI	GCAATG	4 cut(s)	551, 802, 1177, 2394
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	4 cut(s)	980, 1071, 1281, 1400
BseDI	CCNNGG	6 cut(s)	22, 771, 1070, 1104, 1279, 1543
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	5 cut(s)	494, 1268, 2562, 2579, 2622
BseMI	GCAATG	4 cut(s)	551, 802, 1177, 2394
BseMII	CTCAG	8 cut(s)	432, 588, 774, 1111, 1436, 1590, 1692, 2060
BseNI	ACTGG	3 cut(s)	208, 435, 1350
BseRI	GAGGAG	3 cut(s)	356, 1048, 2578
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	8 cut(s)	1121, 1333, 1552, 1656, 1675, 1678, 2092, 2137
BseYI	CCCAGC	1 cut(s)	1738
BsgI	GTGCAG	2 cut(s)	342, 542
BshFI	GGCC	3 cut(s)	737, 2410, 2615
BshNI	GGYRCC	1 cut(s)	18
BshTI	ACCGGT	1 cut(s)	1219
BsiHKAI	GWGCWC	1 cut(s)	641
BsiSI	CCGG	3 cut(s)	1220, 1262, 2336
BslFI	GGGAC	5 cut(s)	905, 1262, 1553, 2336, 2600
BslI	CCNNNNNNNGG	5 cut(s)	494, 1268, 2562, 2579, 2622
BsmAI	GTCTC	5 cut(s)	273, 959, 1196, 1863, 1993
BsmFI	GGGAC	5 cut(s)	905, 1262, 1553, 2336, 2600
BsmI	GAATGC	1 cut(s)	2473
BsnI	GGCC	3 cut(s)	737, 2410, 2615
Bso31I	GGTCTC	1 cut(s)	1993
Bsp1286I	GDGCHC	2 cut(s)	21, 641
Bsp1407I	TGTACA	2 cut(s)	209, 683
Bsp143I	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	4 cut(s)	846, 1967, 1985, 2616
BspANI	GGCC	3 cut(s)	737, 2410, 2615
BspCNI	CTCAG	8 cut(s)	431, 587, 775, 1110, 1435, 1591, 1693, 2059
BspHI	TCATGA	1 cut(s)	2083
BspLI	GGNNCC	8 cut(s)	20, 151, 1278, 1541, 2121, 2352, 2370, 2571
BspMAI	CTGCAG	2 cut(s)	1912, 2142
BspPI	GGATC	3 cut(s)	1318, 1973, 2279
BspT107I	GGYRCC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	1993
BsrDI	GCAATG	4 cut(s)	551, 802, 1177, 2394
BsrFI	RCCGGY	2 cut(s)	1219, 1261
BsrGI	TGTACA	2 cut(s)	209, 683
BsrI	ACTGG	3 cut(s)	208, 435, 1350
BssAI	RCCGGY	2 cut(s)	1219, 1261
BssECI	CCNNGG	6 cut(s)	22, 771, 1070, 1104, 1279, 1543
BssMI	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
BssT1I	CCWWGG	3 cut(s)	22, 771, 1543
Bst2UI	CCWGG	4 cut(s)	980, 1071, 1281, 1400
Bst6I	CTCTTC	7 cut(s)	202, 594, 1066, 1407, 1455, 1996, 2555
BstAPI	GCANNNNNTGC	1 cut(s)	1574
BstAUI	TGTACA	2 cut(s)	209, 683
BstBAI	YACGTR	1 cut(s)	2291
BstC8I	GCNNGC	2 cut(s)	708, 1918
BstDEI	CTNAG	9 cut(s)	418, 574, 783, 924, 1097, 1422, 1599, 1701, 2046
BstDSI	CCRYGG	2 cut(s)	771, 1104
BstKTI	GATC	8 cut(s)	962, 1313, 1384, 1816, 1981, 2036, 2287, 2422
BstMAI	GTCTC	5 cut(s)	273, 959, 1196, 1863, 1993
BstMBI	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
BstMWI	GCNNNNNNNGC	4 cut(s)	703, 1574, 1697, 1953
BstNI	CCWGG	4 cut(s)	980, 1071, 1281, 1400
BstNSI	RCATGY	4 cut(s)	746, 1664, 1920, 1941
BstPAI	GACNNNNGTC	1 cut(s)	1855
BstSCI	CCNGG	4 cut(s)	978, 1069, 1279, 1398
BstSFI	CTRYAG	2 cut(s)	1908, 2138
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	8 cut(s)	1121, 1333, 1552, 1656, 1675, 1678, 2092, 2137
BstV2I	GAAGAC	3 cut(s)	12, 507, 552
BstX2I	RGATCY	2 cut(s)	2033, 2284
BstXI	CCANNNNNNTGG	1 cut(s)	2537
BstYI	RGATCY	2 cut(s)	2033, 2284
BsuI	GTATCC	1 cut(s)	1428
BsuRI	GGCC	3 cut(s)	737, 2410, 2615
BtgI	CCRYGG	2 cut(s)	771, 1104
BtsIMutI	CAGTG	3 cut(s)	430, 525, 1742
Cac8I	GCNNGC	2 cut(s)	708, 1918
CaiI	CAGNNNCTG	1 cut(s)	1871
CciI	TCATGA	1 cut(s)	2083
Cfr10I	RCCGGY	2 cut(s)	1219, 1261
Cfr13I	GGNCC	4 cut(s)	1276, 1540, 1925, 2350
CseI	GACGC	1 cut(s)	481
CsiI	ACCWGGT	1 cut(s)	978
Csp6I	GTAC	5 cut(s)	210, 684, 725, 1930, 2552
CspAI	ACCGGT	1 cut(s)	1219
CviQI	GTAC	5 cut(s)	210, 684, 725, 1930, 2552
DdeI	CTNAG	9 cut(s)	418, 574, 783, 924, 1097, 1422, 1599, 1701, 2046
DpnI	GATC	8 cut(s)	961, 1312, 1383, 1815, 1980, 2035, 2286, 2421
DpnII	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
DraI	TTTAAA	1 cut(s)	1582
DraIII	CACNNNGTG	1 cut(s)	662
DrdI	GACNNNNNNGTC	1 cut(s)	435
DseDI	GACNNNNNNGTC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	735
Eam1104I	CTCTTC	7 cut(s)	202, 594, 1066, 1407, 1455, 1996, 2555
EarI	CTCTTC	7 cut(s)	202, 594, 1066, 1407, 1455, 1996, 2555
Ecl136II	GAGCTC	1 cut(s)	639
Eco130I	CCWWGG	3 cut(s)	22, 771, 1543
Eco24I	GRGCYC	1 cut(s)	641
Eco31I	GGTCTC	1 cut(s)	1993
Eco32I	GATATC	3 cut(s)	87, 482, 1396
Eco47I	GGWCC	4 cut(s)	1276, 1540, 1925, 2350
Eco53kI	GAGCTC	1 cut(s)	639
Eco57I	CTGAAG	4 cut(s)	312, 501, 795, 1032
Eco72I	CACGTG	1 cut(s)	2291
EcoICRI	GAGCTC	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	1540
EcoRI	GAATTC	2 cut(s)	1497, 1783
EcoRII	CCWGG	4 cut(s)	978, 1069, 1279, 1398
EcoRV	GATATC	3 cut(s)	87, 482, 1396
EcoT14I	CCWWGG	3 cut(s)	22, 771, 1543
EcoT22I	ATGCAT	4 cut(s)	1621, 1918, 1922, 2380
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	3 cut(s)	22, 771, 1543
FalI	AAGNNNNNCTT	6 cut(s)	573, 605, 1045, 1077, 2156, 2188
FaqI	GGGAC	5 cut(s)	905, 1262, 1553, 2336, 2600
FauNDI	CATATG	1 cut(s)	643
FblI	GTMKAC	2 cut(s)	669, 1625
Fnu4HI	GCNGC	9 cut(s)	1135, 1347, 1566, 1645, 1689, 1692, 2106, 2151, 2616
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	9 cut(s)	1135, 1347, 1566, 1645, 1689, 1692, 2106, 2151, 2616
FspBI	CTAG	6 cut(s)	660, 1287, 1544, 1572, 1952, 2472
GluI	GCNGC	9 cut(s)	1135, 1347, 1566, 1645, 1689, 1692, 2106, 2151, 2616
GsaI	CCCAGC	1 cut(s)	1742
HaeIII	GGCC	3 cut(s)	737, 2410, 2615
HapII	CCGG	3 cut(s)	1220, 1262, 2336
HgaI	GACGC	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	1626
HindII	GTYRAC	1 cut(s)	1626
HindIII	AAGCTT	3 cut(s)	351, 695, 807
HinfI	GANTC	7 cut(s)	120, 557, 1109, 1175, 1766, 2214, 2588
HpaII	CCGG	3 cut(s)	1220, 1262, 2336
HphI	GGTGA	5 cut(s)	509, 895, 1234, 1850, 2169
Hpy166II	GTNNAC	4 cut(s)	428, 670, 1626, 2254
Hpy8I	GTNNAC	4 cut(s)	428, 670, 1626, 2254
Hpy99I	CGWCG	1 cut(s)	497
HpyCH4IV	ACGT	2 cut(s)	311, 2290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	703, 1574, 1697, 1953
HpyF3I	CTNAG	9 cut(s)	418, 574, 783, 924, 1097, 1422, 1599, 1701, 2046
HpySE526I	ACGT	2 cut(s)	311, 2290
Kzo9I	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
LmnI	GCTCC	6 cut(s)	1061, 1106, 1850, 2432, 2454, 2569
Lsp1109I	GCAGC	8 cut(s)	1121, 1333, 1552, 1656, 1675, 1678, 2092, 2137
LweI	GCATC	7 cut(s)	85, 754, 982, 1791, 1903, 2387, 2488
MabI	ACCWGGT	1 cut(s)	978
MaeI	CTAG	6 cut(s)	660, 1287, 1544, 1572, 1952, 2472
MaeII	ACGT	2 cut(s)	311, 2290
MaeIII	GTNAC	5 cut(s)	307, 583, 1222, 1352, 1838
MalI	GATC	8 cut(s)	961, 1312, 1383, 1815, 1980, 2035, 2286, 2421
MboI	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
MfeI	CAATTG	2 cut(s)	819, 1853
MflI	RGATCY	2 cut(s)	2033, 2284
MhlI	GDGCHC	2 cut(s)	21, 641
MlyI	GAGTC	4 cut(s)	129, 566, 1184, 2582
MmeI	TCCRAC	3 cut(s)	594, 1532, 2554
Mph1103I	ATGCAT	4 cut(s)	1621, 1918, 1922, 2380
MroXI	GAANNNNTTC	2 cut(s)	379, 2525
MseI	TTAA	7 cut(s)	693, 873, 900, 1139, 1386, 1581, 1665
MslI	CAYNNNNRTG	1 cut(s)	2082
MspA1I	CMGCKG	3 cut(s)	760, 1565, 1985
MspI	CCGG	3 cut(s)	1220, 1262, 2336
MspR9I	CCNGG	4 cut(s)	980, 1071, 1281, 1400
MunI	CAATTG	2 cut(s)	819, 1853
Mva1269I	GAATGC	1 cut(s)	2473
MvaI	CCWGG	4 cut(s)	980, 1071, 1281, 1400
MwoI	GCNNNNNNNGC	4 cut(s)	703, 1574, 1697, 1953
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
NlaIV	GGNNCC	8 cut(s)	20, 151, 1278, 1541, 2121, 2352, 2370, 2571
NmuCI	GTSAC	3 cut(s)	583, 1222, 1838
NsiI	ATGCAT	4 cut(s)	1621, 1918, 1922, 2380
NspI	RCATGY	4 cut(s)	746, 1664, 1920, 1941
PaeI	GCATGC	1 cut(s)	1920
PagI	TCATGA	1 cut(s)	2083
PciI	ACATGT	2 cut(s)	1660, 1937
PctI	GAATGC	1 cut(s)	2473
PdmI	GAANNNNTTC	2 cut(s)	379, 2525
PfeI	GAWTC	3 cut(s)	1109, 1766, 2214
PfoI	TCCNGGA	1 cut(s)	1398
PinAI	ACCGGT	1 cut(s)	1219
PkrI	GCNGC	9 cut(s)	1136, 1348, 1567, 1646, 1690, 1693, 2107, 2152, 2617
PleI	GAGTC	4 cut(s)	128, 565, 1183, 2582
PmaCI	CACGTG	1 cut(s)	2291
PmlI	CACGTG	1 cut(s)	2291
PpsI	GAGTC	4 cut(s)	128, 565, 1183, 2582
Ppu21I	YACGTR	1 cut(s)	2291
PpuMI	RGGWCCY	1 cut(s)	1540
PscI	ACATGT	2 cut(s)	1660, 1937
PshAI	GACNNNNGTC	1 cut(s)	1855
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	1 cut(s)	948
Psp124BI	GAGCTC	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	1540
Psp6I	CCWGG	4 cut(s)	978, 1069, 1279, 1398
PspCI	CACGTG	1 cut(s)	2291
PspFI	CCCAGC	1 cut(s)	1738
PspGI	CCWGG	4 cut(s)	978, 1069, 1279, 1398
PspN4I	GGNNCC	8 cut(s)	20, 151, 1278, 1541, 2121, 2352, 2370, 2571
PspPI	GGNCC	4 cut(s)	1276, 1540, 1925, 2350
PspPPI	RGGWCCY	1 cut(s)	1540
PstI	CTGCAG	2 cut(s)	1912, 2142
PstNI	CAGNNNCTG	1 cut(s)	1871
PsuI	RGATCY	2 cut(s)	2033, 2284
PvuII	CAGCTG	2 cut(s)	760, 1565
RsaI	GTAC	5 cut(s)	211, 685, 726, 1931, 2553
RsaNI	GTAC	5 cut(s)	210, 684, 725, 1930, 2552
RseI	CAYNNNNRTG	1 cut(s)	2082
SacI	GAGCTC	1 cut(s)	641
SalI	GTCGAC	1 cut(s)	1624
SaqAI	TTAA	7 cut(s)	693, 873, 900, 1139, 1386, 1581, 1665
SatI	GCNGC	9 cut(s)	1135, 1347, 1566, 1645, 1689, 1692, 2106, 2151, 2616
Sau3AI	GATC	8 cut(s)	959, 1310, 1381, 1813, 1978, 2033, 2284, 2419
Sau96I	GGNCC	4 cut(s)	1276, 1540, 1925, 2350
SchI	GAGTC	4 cut(s)	129, 566, 1184, 2582
ScrFI	CCNGG	4 cut(s)	980, 1071, 1281, 1400
SduI	GDGCHC	2 cut(s)	21, 641
SexAI	ACCWGGT	1 cut(s)	978
SfaNI	GCATC	7 cut(s)	85, 754, 982, 1791, 1903, 2387, 2488
SfcI	CTRYAG	2 cut(s)	1908, 2138
SinI	GGWCC	4 cut(s)	1276, 1540, 1925, 2350
SmiMI	CAYNNNNRTG	1 cut(s)	2082
SmlI	CTYRAG	4 cut(s)	272, 998, 1957, 2053
SmoI	CTYRAG	4 cut(s)	272, 998, 1957, 2053
SpeI	ACTAGT	2 cut(s)	1286, 1571
SphI	GCATGC	1 cut(s)	1920
SsiI	CCGC	4 cut(s)	846, 1967, 1985, 2616
SspI	AATATT	3 cut(s)	898, 2003, 2315
SspMI	CTAG	6 cut(s)	660, 1287, 1544, 1572, 1952, 2472
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	4 cut(s)	978, 1069, 1279, 1398
StyI	CCWWGG	3 cut(s)	22, 771, 1543
TaiI	ACGT	2 cut(s)	314, 2293
TaqI	TCGA	3 cut(s)	200, 1625, 1649
TatI	WGTACW	2 cut(s)	209, 683
TauI	GCSGC	1 cut(s)	2618
TfiI	GAWTC	3 cut(s)	1109, 1766, 2214
Tru1I	TTAA	7 cut(s)	693, 873, 900, 1139, 1386, 1581, 1665
Tru9I	TTAA	7 cut(s)	693, 873, 900, 1139, 1386, 1581, 1665
TscAI	CASTG	3 cut(s)	430, 525, 1749
TseFI	GTSAC	3 cut(s)	583, 1222, 1838
TseI	GCWGC	8 cut(s)	1134, 1346, 1565, 1644, 1688, 1691, 2105, 2150
Tsp45I	GTSAC	3 cut(s)	583, 1222, 1838
TspGWI	ACGGA	4 cut(s)	232, 388, 1093, 1917
TspRI	CASTG	3 cut(s)	430, 525, 1749
VpaK11BI	GGWCC	4 cut(s)	1276, 1540, 1925, 2350
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	4 cut(s)	262, 1497, 1783, 2437
XceI	RCATGY	4 cut(s)	746, 1664, 1920, 1941
XcmI	CCANNNNNNNNNTGG	2 cut(s)	143, 2580
XmaJI	CCTAGG	1 cut(s)	1543
XmiI	GTMKAC	2 cut(s)	669, 1625
XmnI	GAANNNNTTC	2 cut(s)	379, 2525
XspI	CTAG	6 cut(s)	660, 1287, 1544, 1572, 1952, 2472
Zsp2I	ATGCAT	4 cut(s)	1621, 1918, 1922, 2380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.