Prupe.1G579900_v2.0.a1

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016581
Physical Location & Seq
Forward (+)
47175805 .. 47177811
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G579900.1

Sequence Viewer

Length: 1095 bp
ATGGCGGGTGAAGTTGGCGGTGCTGGTGGTGAAAGCGGCACGTCGTCACCCAAGAGCAGGGTGAAGTTCTTGTGCAGCCATGGTGGGAAAATCCTTCCCAGACCCGCCGACGGCCAACTCAAGTACGTCGGCGGCGAGACTCGCGTCGTCTCCTTGTCCCGCGACATTTCCTTCTCCGAGTTGATGAAGAAGCTGAGCTCGTTGTTTGATGGGGACATGGTGTTGAAGTACCAGCTAATGACAGAAGACCTGGACGCCTTGGTCTCCGTGAAAAGCAACGAAGATCTAAAGCACATGCTGGACGAATACAATAGGCTTGAGAACGAAGGGAGCTCGAGGCTAAGAACCTTTTTGTTCCCCTCAAAGCCGATCATGATCGAGAACCAAACGGCGGCGTTGGAACACCAAATGATGGAGCAGCGTTACATCGACGCCATCAATGGCATCGTCCGGTTGTGGCCAAAGATGCAACCCCAGCAGCAGATGATTCTCGCTCCTAACATGATCATTGGAAGTAGCCCCATGGCCAGCATGAGTATATCCTCAGCATGTTCGTCTCCGAAATCAGCTTCCCAGGAACAACAGTTGTTGTTGGCGGACATGAGCATGCCGGCTCATAGGATCACGGTGTCGCCTCCGATGCAGAAAGTGCATAGCTCTCCTAGTATTTGCAGCAGCAGCTTTAATATTCAACAGACGTACCAAAACCATGCCCAGGGGCGTCACCCTTACCTTAATAATTTGCAGCACCATCATGCCAACCAATCTTCATTTAGTGCAAGAGCACACCACAGAGGGATTAGGACTCCGCCGCCTTTGTTGTCACCGGGTAGGTTGTCGCCGGGTAGGTCTGAGTCCGGGACTGGGAGGAGCTCGTTGATGGGTACAACTAGTACTGCCCACGTCCAAAACCATTACAACAACAACCACCACCACCACCACGCTGCTAGTGGTAATAGTAGTCCTAGATCAATGTCATCTCACCACCGAGTAAGTGGAGGCGGCGGAGGGTATTATAGTAAGTGCTGCTATCACGACGAATGTCCACCCTATGCTTGTAACAGGGCTGAGAGTCTTCCTCGAAGTCCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

365

Amino Acids

39.97

Weight (kDa)

9.23

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016581)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49920
fragaria_vesca FvH4_5g28590
malus_domestica MD15G1436100.v1.1
prunus_persica Prupe.1G579900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220591
rosa_laevigata RLG00000002215
rosa_multiflora Rmu_ssc0000189.1_g000028
rosa_roxburghii Rroxscaffold_3G00239280
rosa_rugosa Rorug07G0195200
rosa_samantha Rh7AG336200 Rh7BG327300 Rh7CG353900 Rh7DG332500
rosa_wichuraiana Rw7G028680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AccB7I CCANNNNNTGG 1 cut(s) 412
AccII CGCG 2 cut(s) 144, 162
AclWI GGATC 1 cut(s) 629
AcoI YGGCCR 3 cut(s) 112, 458, 525
AcyI GRCGYC 3 cut(s) 255, 432, 721
AfaI GTAC 5 cut(s) 125, 230, 701, 886, 895
AfiI CCNNNNNNNGG 6 cut(s) 57, 110, 391, 412, 715, 864
AgsI TTSAA 2 cut(s) 226, 692
AhlI ACTAGT 1 cut(s) 890
AjiI CACGTC 2 cut(s) 42, 904
AjnI CCWGG 3 cut(s) 249, 573, 714
AluBI AGCT 8 cut(s) 193, 198, 235, 333, 569, 657, 681, 873
AluI AGCT 8 cut(s) 193, 198, 235, 333, 569, 657, 681, 873
Alw21I GWGCWC 4 cut(s) 200, 335, 787, 875
Alw26I GTCTC 4 cut(s) 131, 154, 268, 561
AlwI GGATC 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 3 cut(s) 112, 458, 525
ApeKI GCWGC 9 cut(s) 75, 418, 478, 672, 675, 678, 745, 944, 1026
AsuC2I CCSGG 3 cut(s) 828, 843, 859
AsuHPI GGTGA 7 cut(s) 20, 39, 41, 73, 716, 816, 974
AvaI CYCGRG 1 cut(s) 334
BaeI ACNNNNGTAYC 2 cut(s) 683, 716
BalI TGGCCA 2 cut(s) 460, 527
BanII GRGCYC 3 cut(s) 200, 335, 875
BbsI GAAGAC 2 cut(s) 252, 1067
Bbv12I GWGCWC 4 cut(s) 200, 335, 787, 875
BbvCI CCTCAGC 1 cut(s) 544
BbvI GCAGC 9 cut(s) 87, 430, 490, 684, 687, 690, 757, 931, 1013
BccI CCATC 5 cut(s) 203, 406, 443, 759, 874
BceAI ACGGC 2 cut(s) 127, 405
BciT130I CCWGG 3 cut(s) 251, 575, 716
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 3 cut(s) 828, 843, 859
BcoDI GTCTC 4 cut(s) 131, 154, 268, 561
BcuI ACTAGT 1 cut(s) 890
BfaI CTAG 5 cut(s) 663, 891, 948, 966, 1089
BglII AGATCT 1 cut(s) 283
BlpI GCTNAGC 1 cut(s) 194
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 6 cut(s) 251, 575, 716, 828, 843, 859
BmeT110I CYCGRG 1 cut(s) 334
BmgBI CACGTC 2 cut(s) 42, 904
BmrFI CCNGG 6 cut(s) 251, 575, 716, 828, 843, 859
BmrI ACTGGG 1 cut(s) 873
BmsI GCATC 3 cut(s) 453, 456, 630
BmuI ACTGGG 1 cut(s) 873
BoxI GACNNNNGTC 2 cut(s) 143, 1041
BpiI GAAGAC 2 cut(s) 252, 1067
BplI GAGNNNNNCTC 2 cut(s) 1063, 1095
Bpu10I CCTNAGC 1 cut(s) 544
Bpu1102I GCTNAGC 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 104, 338
BpuMI CCSGG 3 cut(s) 828, 843, 859
BsaBI GATNNNNATC 1 cut(s) 374
BsaHI GRCGYC 3 cut(s) 255, 432, 721
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 6 cut(s) 79, 258, 522, 573, 714, 715
BsaWI WCCGGW 1 cut(s) 450
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 110, 391, 412, 715, 864
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 1 cut(s) 868
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 3 cut(s) 251, 575, 716
BseDI CCNNGG 6 cut(s) 79, 258, 522, 573, 714, 715
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 6 cut(s) 57, 110, 391, 412, 715, 864
BseMII CTCAG 4 cut(s) 185, 558, 843, 1059
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 1 cut(s) 883
BseXI GCAGC 9 cut(s) 87, 430, 490, 684, 687, 690, 757, 931, 1013
BseYI CCCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 144, 162
BshFI GGCC 3 cut(s) 114, 460, 527
BsiHKAI GWGCWC 4 cut(s) 200, 335, 787, 875
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 5 cut(s) 451, 611, 827, 842, 858
BslFI GGGAC 3 cut(s) 142, 227, 874
BslI CCNNNNNNNGG 6 cut(s) 57, 110, 391, 412, 715, 864
BsmAI GTCTC 4 cut(s) 131, 154, 268, 561
BsmBI CGTCTC 2 cut(s) 154, 561
BsmFI GGGAC 3 cut(s) 142, 227, 874
BsnI GGCC 3 cut(s) 114, 460, 527
Bso31I GGTCTC 1 cut(s) 268
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 4 cut(s) 200, 335, 787, 875
Bsp143I GATC 6 cut(s) 283, 369, 375, 504, 621, 968
Bsp1720I GCTNAGC 1 cut(s) 194
Bsp19I CCATGG 2 cut(s) 79, 522
BspANI GGCC 3 cut(s) 114, 460, 527
BspCNI CTCAG 4 cut(s) 186, 557, 844, 1060
BspFNI CGCG 2 cut(s) 144, 162
BspHI TCATGA 1 cut(s) 372
BspPI GGATC 1 cut(s) 629
BspTNI GGTCTC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 1 cut(s) 868
BssAI RCCGGY 1 cut(s) 610
BssECI CCNNGG 6 cut(s) 79, 258, 522, 573, 714, 715
BssMI GATC 6 cut(s) 283, 369, 375, 504, 621, 968
BssNI GRCGYC 3 cut(s) 255, 432, 721
BssT1I CCWWGG 3 cut(s) 79, 258, 522
Bst2UI CCWGG 3 cut(s) 251, 575, 716
Bst4CI ACNGT 2 cut(s) 585, 628
BstACI GRCGYC 3 cut(s) 255, 432, 721
BstAPI GCANNNNNTGC 1 cut(s) 649
BstC8I GCNNGC 3 cut(s) 529, 608, 612
BstDEI CTNAG 5 cut(s) 194, 341, 544, 852, 1068
BstDSI CCRYGG 2 cut(s) 79, 522
BstFNI CGCG 2 cut(s) 144, 162
BstKTI GATC 6 cut(s) 286, 372, 378, 507, 624, 971
BstMAI GTCTC 4 cut(s) 131, 154, 268, 561
BstMBI GATC 6 cut(s) 283, 369, 375, 504, 621, 968
BstMWI GCNNNNNNNGC 6 cut(s) 141, 466, 475, 640, 649, 678
BstNI CCWGG 3 cut(s) 251, 575, 716
BstNSI RCATGY 3 cut(s) 298, 552, 610
BstPAI GACNNNNGTC 2 cut(s) 143, 1041
BstSCI CCNGG 6 cut(s) 249, 573, 714, 826, 841, 857
BstUI CGCG 2 cut(s) 144, 162
BstV1I GCAGC 9 cut(s) 87, 430, 490, 684, 687, 690, 757, 931, 1013
BstV2I GAAGAC 2 cut(s) 252, 1067
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 3 cut(s) 114, 460, 527
BtgI CCRYGG 2 cut(s) 79, 522
BtrI CACGTC 2 cut(s) 42, 904
Cac8I GCNNGC 3 cut(s) 529, 608, 612
CciI TCATGA 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 610
CseI GACGC 4 cut(s) 133, 263, 440, 710
Csp6I GTAC 5 cut(s) 124, 229, 700, 885, 894
CviQI GTAC 5 cut(s) 124, 229, 700, 885, 894
DdeI CTNAG 5 cut(s) 194, 341, 544, 852, 1068
DpnI GATC 6 cut(s) 285, 371, 377, 506, 623, 970
DpnII GATC 6 cut(s) 283, 369, 375, 504, 621, 968
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 3 cut(s) 112, 458, 525
EciI GGCGGA 3 cut(s) 611, 798, 1020
Ecl136II GAGCTC 3 cut(s) 198, 333, 873
Eco130I CCWWGG 3 cut(s) 79, 258, 522
Eco24I GRGCYC 3 cut(s) 200, 335, 875
Eco31I GGTCTC 1 cut(s) 268
Eco53kI GAGCTC 3 cut(s) 198, 333, 873
Eco88I CYCGRG 1 cut(s) 334
EcoICRI GAGCTC 3 cut(s) 198, 333, 873
EcoRII CCWGG 3 cut(s) 249, 573, 714
EcoT14I CCWWGG 3 cut(s) 79, 258, 522
EcoT38I GRGCYC 3 cut(s) 200, 335, 875
ErhI CCWWGG 3 cut(s) 79, 258, 522
Esp3I CGTCTC 2 cut(s) 154, 561
FaqI GGGAC 3 cut(s) 142, 227, 874
FauI CCCGC 2 cut(s) 112, 167
FbaI TGATCA 1 cut(s) 504
FriOI GRGCYC 3 cut(s) 200, 335, 875
FspBI CTAG 5 cut(s) 663, 891, 948, 966, 1089
GsaI CCCAGC 1 cut(s) 478
HaeIII GGCC 3 cut(s) 114, 460, 527
HapII CCGG 5 cut(s) 451, 611, 827, 842, 858
HgaI GACGC 4 cut(s) 133, 263, 440, 710
Hin1I GRCGYC 3 cut(s) 255, 432, 721
HinfI GANTC 5 cut(s) 139, 487, 805, 854, 1072
HpaII CCGG 5 cut(s) 451, 611, 827, 842, 858
HphI GGTGA 7 cut(s) 20, 39, 41, 73, 716, 816, 974
Hpy166II GTNNAC 1 cut(s) 1046
Hpy188I TCNGA 4 cut(s) 178, 561, 639, 853
Hpy188III TCNNGA 3 cut(s) 373, 379, 1034
Hpy8I GTNNAC 1 cut(s) 1046
Hpy99I CGWCG 6 cut(s) 46, 113, 131, 149, 434, 1040
HpyAV CCTTC 3 cut(s) 104, 181, 320
HpyCH4III ACNGT 2 cut(s) 585, 628
HpyCH4IV ACGT 4 cut(s) 41, 126, 698, 903
HpyCH4V TGCA 7 cut(s) 75, 469, 643, 652, 672, 745, 779
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 466, 475, 640, 649, 678
HpyF3I CTNAG 5 cut(s) 194, 341, 544, 852, 1068
HpySE526I ACGT 4 cut(s) 41, 126, 698, 903
Hsp92I GRCGYC 3 cut(s) 255, 432, 721
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 6 cut(s) 283, 369, 375, 504, 621, 968
LmnI GCTCC 4 cut(s) 330, 415, 499, 870
Lsp1109I GCAGC 9 cut(s) 87, 430, 490, 684, 687, 690, 757, 931, 1013
LweI GCATC 3 cut(s) 453, 456, 630
MaeI CTAG 5 cut(s) 663, 891, 948, 966, 1089
MaeII ACGT 4 cut(s) 41, 126, 698, 903
MaeIII GTNAC 5 cut(s) 45, 422, 722, 822, 1058
MalI GATC 6 cut(s) 285, 371, 377, 506, 623, 970
MboI GATC 6 cut(s) 283, 369, 375, 504, 621, 968
MboII GAAGA 5 cut(s) 199, 257, 293, 759, 1067
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 4 cut(s) 200, 335, 787, 875
MlsI TGGCCA 2 cut(s) 460, 527
MluCI AATT 1 cut(s) 739
MluNI TGGCCA 2 cut(s) 460, 527
MlyI GAGTC 4 cut(s) 133, 799, 863, 1081
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 9 cut(s) 330, 370, 553, 645, 788, 861, 992, 1001, 1089
Mox20I TGGCCA 2 cut(s) 460, 527
MroNI GCCGGC 1 cut(s) 610
MscI TGGCCA 2 cut(s) 460, 527
MseI TTAA 2 cut(s) 684, 735
MslI CAYNNNNRTG 2 cut(s) 605, 753
Msp20I TGGCCA 2 cut(s) 460, 527
MspI CCGG 5 cut(s) 451, 611, 827, 842, 858
MspR9I CCNGG 6 cut(s) 251, 575, 716, 828, 843, 859
MvaI CCWGG 3 cut(s) 251, 575, 716
MvnI CGCG 2 cut(s) 144, 162
MwoI GCNNNNNNNGC 6 cut(s) 141, 466, 475, 640, 649, 678
NaeI GCCGGC 1 cut(s) 612
NciI CCSGG 3 cut(s) 828, 843, 859
NcoI CCATGG 2 cut(s) 79, 522
NdeII GATC 6 cut(s) 283, 369, 375, 504, 621, 968
NgoMIV GCCGGC 1 cut(s) 610
NmuCI GTSAC 3 cut(s) 45, 722, 822
NspI RCATGY 3 cut(s) 298, 552, 610
PaeI GCATGC 1 cut(s) 610
PaeR7I CTCGAG 1 cut(s) 334
PagI TCATGA 1 cut(s) 372
PasI CCCWGGG 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 487
PflMI CCANNNNNTGG 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 857
PleI GAGTC 4 cut(s) 133, 799, 862, 1080
PpsI GAGTC 4 cut(s) 133, 799, 862, 1080
PshAI GACNNNNGTC 2 cut(s) 143, 1041
Psp124BI GAGCTC 3 cut(s) 200, 335, 875
Psp6I CCWGG 3 cut(s) 249, 573, 714
PspFI CCCAGC 1 cut(s) 474
PspGI CCWGG 3 cut(s) 249, 573, 714
PspXI VCTCGAGB 1 cut(s) 334
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 5 cut(s) 125, 230, 701, 886, 895
RsaNI GTAC 5 cut(s) 124, 229, 700, 885, 894
RseI CAYNNNNRTG 2 cut(s) 605, 753
SacI GAGCTC 3 cut(s) 200, 335, 875
SaqAI TTAA 2 cut(s) 684, 735
Sau3AI GATC 6 cut(s) 283, 369, 375, 504, 621, 968
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 4 cut(s) 133, 799, 863, 1081
ScrFI CCNGG 6 cut(s) 251, 575, 716, 828, 843, 859
SduI GDGCHC 4 cut(s) 200, 335, 787, 875
SfaNI GCATC 3 cut(s) 453, 456, 630
Sfr274I CTCGAG 1 cut(s) 334
SlaI CTCGAG 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 605, 753
SmlI CTYRAG 3 cut(s) 119, 317, 334
SmoI CTYRAG 3 cut(s) 119, 317, 334
SpeI ACTAGT 1 cut(s) 890
SphI GCATGC 1 cut(s) 610
Sse9I AATT 1 cut(s) 739
SspI AATATT 1 cut(s) 688
SspMI CTAG 5 cut(s) 663, 891, 948, 966, 1089
SstI GAGCTC 3 cut(s) 200, 335, 875
StyD4I CCNGG 6 cut(s) 249, 573, 714, 826, 841, 857
StyI CCWWGG 3 cut(s) 79, 258, 522
TaaI ACNGT 2 cut(s) 585, 628
TaiI ACGT 4 cut(s) 44, 129, 701, 906
TaqI TCGA 4 cut(s) 335, 378, 429, 1081
TasI AATT 1 cut(s) 739
TatI WGTACW 1 cut(s) 893
TauI GCSGC 5 cut(s) 39, 135, 395, 814, 1005
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 2 cut(s) 684, 735
Tru9I TTAA 2 cut(s) 684, 735
TseFI GTSAC 3 cut(s) 45, 722, 822
TseI GCWGC 9 cut(s) 75, 418, 478, 672, 675, 678, 745, 944, 1026
Tsp45I GTSAC 3 cut(s) 45, 722, 822
TspDTI ATGAA 2 cut(s) 200, 759
TspGWI ACGGA 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 412
XceI RCATGY 3 cut(s) 298, 552, 610
XcmI CCANNNNNNNNNTGG 2 cut(s) 947, 992
XhoI CTCGAG 1 cut(s) 334
XspI CTAG 5 cut(s) 663, 891, 948, 966, 1089
ZrmI AGTACT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.