Rh7BG327300

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016581
Physical Location & Seq
Reverse (-)
32437043 .. 32438723
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG327300.1

Sequence Viewer

Length: 1101 bp
ATGGCGTGTGAAGTTGGTGGCGGGGGTGGGCAAGACAACGCGTCGTCGGGTTTGGGATCGCCGAAGAAGAACAGGGATAGGATCAAGTTGCTGTGCAGCTATGGCGGGAAAATCCTACCTAGACCTTCCGACCGCATCCTAAAGTATGTTGGTGGCGAGACTCGTGTCGTTGCCTTGTCCCGCGACGCAACTTTTTCTGAATTGATGAAGAAATTGAGTGCAGTAGTTGATGGGGACATGGTGTTGAAGTACCAGTTAATCCCTGAAGATCTGGATGCCTTGGTCTCTGTTCGAAGCGATGAAGATGTAAAGCACATGCTGGACGAATATGATAGACAAGAAAACCAAGGCATGAGTCCTAGGCTAAGGACCTTCTTGTTTCCATCCAAGCCAATCATGATAGAAAACAGCAGCCACTCATTGGAGCTAGAGCAGCGTTACATTGACGCCATCAATGGCATAGTCCGTTCATCGAAACAACAGCCACCCTCAATCATAGGCAGCCCTCACATCGCCAGCACCAGCAGCATTGGGAATTGCAGCAGCCCCATAGCCAGCTACAGCCCCCTTGCTAGCTTTTCCTCTGCTTGTTCTTCCCCCAAGTCAGGATCGCCCGAACACCATTTTATGGTGGTACAAGAAGCTAACCAAATATTACAAGCCAGTAGATTTTCGCTTCCTCCTGTTATGCATAAAGTGCAGAGCTCTCCCAGCCTTTCTGGTAATCTTAATCTTCAACAATACCACAACCTAAACTTTGCTCACCGTCACCACCAGGGTGGTGGATACCATTACCAACAACCCCAAAGTGGCCACTACCAAATGTCTAGAAGCCTATCAAGAAACTCGCACCCCCACAACCACAGTAGAGGTGGTCTAGGCAGTCCCACCCCGCCCCATATGTCTCCCAGGGGAAGATCCGAGTCAGGGAGCGTGAGGAGCTTGATGGGTCAGTCTCGTCATAATTCGGGTTGCAGTAGCCCGAGACAACAAAACCAAAGACCAAATGCAGGAGGAGTCAACGATTATTGTGATGATCCATATGGCTACAACGGGGTTGATAGAGCTGAGAGTCTTCCAACAAGTCCACGACAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

366

Amino Acids

40.01

Weight (kDa)

9.17

Isoelectric Point (pI)

76.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 47 - 126 4.3e-14 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016581)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49920
fragaria_vesca FvH4_5g28590
malus_domestica MD15G1436100.v1.1
prunus_persica Prupe.1G579900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220591
rosa_laevigata RLG00000002215
rosa_multiflora Rmu_ssc0000189.1_g000028
rosa_roxburghii Rroxscaffold_3G00239280
rosa_rugosa Rorug07G0195200
rosa_samantha Rh7AG336200 Rh7BG327300 Rh7CG353900 Rh7DG332500
rosa_wichuraiana Rw7G028680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 421, 628
AccII CGCG 2 cut(s) 41, 183
AciI CCGC 5 cut(s) 21, 105, 133, 181, 893
AclI AACGTT 1 cut(s) 1096
AclWI GGATC 5 cut(s) 64, 89, 616, 912, 1031
AcoI YGGCCR 1 cut(s) 811
AcuI CTGAAG 1 cut(s) 285
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 2 cut(s) 251, 636
AfiI CCNNNNNNNGG 6 cut(s) 421, 605, 628, 809, 927, 1010
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 2 cut(s) 247, 737
AhdI GACNNNNNGTC 1 cut(s) 40
AjnI CCWGG 2 cut(s) 774, 908
AleI CACNNNNGTG 1 cut(s) 777
AluBI AGCT 8 cut(s) 99, 427, 558, 576, 644, 705, 942, 1067
AluI AGCT 8 cut(s) 99, 427, 558, 576, 644, 705, 942, 1067
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 5 cut(s) 152, 289, 909, 960, 979
AlwI GGATC 5 cut(s) 64, 89, 616, 912, 1031
Ama87I CYCGRG 1 cut(s) 982
AoxI GGCC 1 cut(s) 811
ApeKI GCWGC 7 cut(s) 96, 411, 433, 501, 525, 540, 543
AspA2I CCTAGG 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 755, 761
AsuII TTCGAA 1 cut(s) 292
AsuNHI GCTAGC 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 982
AvaII GGWCC 1 cut(s) 369
AvrII CCTAGG 1 cut(s) 359
BalI TGGCCA 1 cut(s) 813
BanII GRGCYC 1 cut(s) 707
BauI CACGAG 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 1067
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 7 cut(s) 108, 423, 445, 513, 537, 552, 555
BccI CCATC 4 cut(s) 224, 391, 458, 940
BciT130I CCWGG 2 cut(s) 776, 910
BciVI GTATCC 1 cut(s) 779
BcoDI GTCTC 5 cut(s) 152, 289, 909, 960, 979
BfaI CTAG 6 cut(s) 120, 360, 428, 573, 828, 878
BfmI CTRYAG 1 cut(s) 559
BfuI GTATCC 1 cut(s) 779
BglII AGATCT 1 cut(s) 268
BisI GCNGC 7 cut(s) 97, 412, 434, 502, 526, 541, 544
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 7 cut(s) 98, 413, 435, 503, 527, 542, 545
Bme1390I CCNGG 2 cut(s) 776, 910
Bme18I GGWCC 1 cut(s) 369
BmeRI GACNNNNNGTC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 982
BmgT120I GGNCC 1 cut(s) 369
BmrFI CCNGG 2 cut(s) 776, 910
BmsI GCATC 2 cut(s) 144, 265
BmtI GCTAGC 1 cut(s) 576
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 1067
Bpu10I CCTNAGC 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 447
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 6 cut(s) 279, 346, 359, 775, 908, 909
Bsc4I CCNNNNNNNGG 6 cut(s) 421, 605, 628, 809, 927, 1010
Bse1I ACTGG 2 cut(s) 253, 663
BseBI CCWGG 2 cut(s) 776, 910
BseDI CCNNGG 6 cut(s) 279, 346, 359, 775, 908, 909
BseGI GGATG 3 cut(s) 135, 280, 383
BseLI CCNNNNNNNGG 6 cut(s) 421, 605, 628, 809, 927, 1010
BseMII CTCAG 1 cut(s) 1059
BseNI ACTGG 2 cut(s) 253, 663
BseRI GAGGAG 2 cut(s) 952, 1029
BseXI GCAGC 7 cut(s) 108, 423, 445, 513, 537, 552, 555
BseYI CCCAGC 1 cut(s) 710
BsgI GTGCAG 3 cut(s) 115, 240, 719
Bsh1236I CGCG 2 cut(s) 41, 183
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 707
BsiHKCI CYCGRG 1 cut(s) 982
BslFI GGGAC 3 cut(s) 163, 248, 870
BslI CCNNNNNNNGG 6 cut(s) 421, 605, 628, 809, 927, 1010
BsmAI GTCTC 5 cut(s) 152, 289, 909, 960, 979
BsmFI GGGAC 3 cut(s) 163, 248, 870
BsnI GGCC 1 cut(s) 813
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 982
Bsp119I TTCGAA 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
BspACI CCGC 5 cut(s) 21, 105, 133, 181, 893
BspANI GGCC 1 cut(s) 813
BspCNI CTCAG 1 cut(s) 1060
BspFNI CGCG 2 cut(s) 41, 183
BspHI TCATGA 1 cut(s) 396
BspOI GCTAGC 1 cut(s) 576
BspPI GGATC 5 cut(s) 64, 89, 616, 912, 1031
BspT104I TTCGAA 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 289
BsrI ACTGG 2 cut(s) 253, 663
BssECI CCNNGG 6 cut(s) 279, 346, 359, 775, 908, 909
BssMI GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
BssNI GRCGYC 1 cut(s) 447
BssSI CACGAG 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 279, 346, 359
Bst2BI CACGAG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 776, 910
Bst4CI ACNGT 2 cut(s) 767, 866
BstACI GRCGYC 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 697
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 517, 556, 574
BstDEI CTNAG 2 cut(s) 365, 1068
BstF5I GGATG 3 cut(s) 135, 280, 383
BstFNI CGCG 2 cut(s) 41, 183
BstKTI GATC 6 cut(s) 59, 84, 271, 611, 920, 1039
BstMAI GTCTC 5 cut(s) 152, 289, 909, 960, 979
BstMBI GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 6 cut(s) 102, 433, 525, 697, 711, 939
BstNI CCWGG 2 cut(s) 776, 910
BstNSI RCATGY 1 cut(s) 319
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 774, 908
BstSFI CTRYAG 1 cut(s) 559
BstUI CGCG 2 cut(s) 41, 183
BstV1I GCAGC 7 cut(s) 108, 423, 445, 513, 537, 552, 555
BstV2I GAAGAC 1 cut(s) 1067
BstX2I RGATCY 2 cut(s) 268, 917
BstXI CCANNNNNNTGG 2 cut(s) 779, 782
BstYI RGATCY 2 cut(s) 268, 917
BsuI GTATCC 1 cut(s) 779
BsuRI GGCC 1 cut(s) 813
BtgZI GCGATG 2 cut(s) 312, 496
BtsCI GGATG 3 cut(s) 135, 280, 383
Cac8I GCNNGC 3 cut(s) 517, 556, 574
CciI TCATGA 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 369
CseI GACGC 3 cut(s) 30, 194, 455
Csp6I GTAC 2 cut(s) 250, 635
CviAII CATG 4 cut(s) 238, 316, 352, 397
CviQI GTAC 2 cut(s) 250, 635
DdeI CTNAG 2 cut(s) 365, 1068
DpnI GATC 6 cut(s) 58, 83, 270, 610, 919, 1038
DpnII GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
DriI GACNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 811
Eam1105I GACNNNNNGTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 705
Eco130I CCWWGG 3 cut(s) 279, 346, 359
Eco24I GRGCYC 1 cut(s) 707
Eco31I GGTCTC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 705
Eco57I CTGAAG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 982
EcoICRI GAGCTC 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 774, 908
EcoT14I CCWWGG 3 cut(s) 279, 346, 359
EcoT22I ATGCAT 1 cut(s) 693
EcoT38I GRGCYC 1 cut(s) 707
ErhI CCWWGG 3 cut(s) 279, 346, 359
FaeI CATG 4 cut(s) 241, 319, 355, 400
FaqI GGGAC 3 cut(s) 163, 248, 870
FatI CATG 4 cut(s) 237, 315, 351, 396
FauI CCCGC 4 cut(s) 14, 98, 188, 900
FauNDI CATATG 2 cut(s) 900, 1042
Fnu4HI GCNGC 7 cut(s) 97, 412, 434, 502, 526, 541, 544
FokI GGATG 3 cut(s) 122, 287, 370
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 7 cut(s) 97, 412, 434, 502, 526, 541, 544
FspBI CTAG 6 cut(s) 120, 360, 428, 573, 828, 878
GluI GCNGC 7 cut(s) 97, 412, 434, 502, 526, 541, 544
GsaI CCCAGC 1 cut(s) 714
HaeIII GGCC 1 cut(s) 813
HgaI GACGC 3 cut(s) 30, 194, 455
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 4 cut(s) 241, 319, 355, 400
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HinfI GANTC 5 cut(s) 160, 355, 923, 1017, 1072
HphI GGTGA 2 cut(s) 755, 761
Hpy166II GTNNAC 2 cut(s) 1021, 1088
Hpy188I TCNGA 3 cut(s) 130, 199, 922
Hpy188III TCNNGA 5 cut(s) 272, 397, 606, 828, 840
Hpy8I GTNNAC 2 cut(s) 1021, 1088
Hpy99I CGWCG 3 cut(s) 46, 49, 188
HpyAV CCTTC 2 cut(s) 135, 382
HpyCH4III ACNGT 2 cut(s) 767, 866
HpyCH4IV ACGT 1 cut(s) 1096
HpyCH4V TGCA 7 cut(s) 96, 221, 540, 691, 700, 975, 1010
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 433, 525, 697, 711, 939
HpyF3I CTNAG 2 cut(s) 365, 1068
HpySE526I ACGT 1 cut(s) 1096
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 4 cut(s) 241, 319, 355, 400
Kzo9I GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
LmnI GCTCC 3 cut(s) 424, 930, 939
Lsp1109I GCAGC 7 cut(s) 108, 423, 445, 513, 537, 552, 555
LweI GCATC 2 cut(s) 144, 265
MaeI CTAG 6 cut(s) 120, 360, 428, 573, 828, 878
MaeII ACGT 1 cut(s) 1096
MaeIII GTNAC 2 cut(s) 437, 767
MalI GATC 6 cut(s) 58, 83, 270, 610, 919, 1038
MboI GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
MboII GAAGA 9 cut(s) 76, 79, 220, 278, 314, 585, 725, 927, 1067
MflI RGATCY 2 cut(s) 268, 917
MhlI GDGCHC 1 cut(s) 707
MlsI TGGCCA 1 cut(s) 813
MluCI AATT 4 cut(s) 200, 212, 535, 964
MluI ACGCGT 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 813
MlyI GAGTC 5 cut(s) 154, 364, 932, 1026, 1081
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 7 cut(s) 499, 516, 592, 690, 863, 930, 1007
Mox20I TGGCCA 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 693
MscI TGGCCA 1 cut(s) 813
MseI TTAA 2 cut(s) 257, 729
MslI CAYNNNNRTG 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 813
MspR9I CCNGG 2 cut(s) 776, 910
MvaI CCWGG 2 cut(s) 776, 910
MvnI CGCG 2 cut(s) 41, 183
MwoI GCNNNNNNNGC 6 cut(s) 102, 433, 525, 697, 711, 939
NdeI CATATG 2 cut(s) 900, 1042
NdeII GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
NheI GCTAGC 1 cut(s) 572
NlaIII CATG 4 cut(s) 241, 319, 355, 400
NmuCI GTSAC 1 cut(s) 767
NsiI ATGCAT 1 cut(s) 693
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 777
PagI TCATGA 1 cut(s) 396
PasI CCCWGGG 1 cut(s) 909
PflMI CCANNNNNTGG 2 cut(s) 421, 628
PkrI GCNGC 7 cut(s) 98, 413, 435, 503, 527, 542, 545
PleI GAGTC 5 cut(s) 154, 363, 931, 1025, 1080
PpsI GAGTC 5 cut(s) 154, 363, 931, 1025, 1080
PpuMI RGGWCCY 1 cut(s) 369
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 707
Psp1406I AACGTT 1 cut(s) 1096
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 774, 908
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 2 cut(s) 774, 908
PspPI GGNCC 1 cut(s) 369
PspPPI RGGWCCY 1 cut(s) 369
PsuI RGATCY 2 cut(s) 268, 917
RsaI GTAC 2 cut(s) 251, 636
RsaNI GTAC 2 cut(s) 250, 635
RseI CAYNNNNRTG 1 cut(s) 777
SacI GAGCTC 1 cut(s) 707
SaqAI TTAA 2 cut(s) 257, 729
SatI GCNGC 7 cut(s) 97, 412, 434, 502, 526, 541, 544
Sau3AI GATC 6 cut(s) 56, 81, 268, 608, 917, 1036
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 5 cut(s) 154, 364, 932, 1026, 1081
ScrFI CCNGG 2 cut(s) 776, 910
SduI GDGCHC 1 cut(s) 707
SfaNI GCATC 2 cut(s) 144, 265
SfcI CTRYAG 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 292
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 777
Sse9I AATT 4 cut(s) 200, 212, 535, 964
SsiI CCGC 5 cut(s) 21, 105, 133, 181, 893
SspI AATATT 1 cut(s) 654
SspMI CTAG 6 cut(s) 120, 360, 428, 573, 828, 878
SstI GAGCTC 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 774, 908
StyI CCWWGG 3 cut(s) 279, 346, 359
TaaI ACNGT 2 cut(s) 767, 866
TaiI ACGT 1 cut(s) 1099
TaqI TCGA 2 cut(s) 292, 473
TasI AATT 4 cut(s) 200, 212, 535, 964
Tru1I TTAA 2 cut(s) 257, 729
Tru9I TTAA 2 cut(s) 257, 729
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 7 cut(s) 96, 411, 433, 501, 525, 540, 543
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 3 cut(s) 221, 315, 459
TspGWI ACGGA 1 cut(s) 455
Van91I CCANNNNNTGG 2 cut(s) 421, 628
VpaK11BI GGWCC 1 cut(s) 369
XbaI TCTAGA 1 cut(s) 827
XceI RCATGY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 2 cut(s) 779, 869
XmaJI CCTAGG 1 cut(s) 359
XspI CTAG 6 cut(s) 120, 360, 428, 573, 828, 878
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.