Rh7CG353900

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016581
Physical Location & Seq
Reverse (-)
40466417 .. 40467139
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG353900.1

Sequence Viewer

Length: 723 bp
ATGATAGAAAACAGCAGCCACTCATTGGAGCTAGAGCAGCGTTACATTGACGCCATCAATGGCATAGTCCGTTCATCGAAACAACAGCCACCCTCAATCATAGGCAGCCCTCACATCGCCGGCACCAGCAGCATTGGGAATTGCAGCAGCCCCATAGCCAACTGCAGCCCCCTTGCTAGCTTTTCCTCTGCTTGTTCTTCCCCCAAGTCAGGATCGCCCGAACACCATTTTATGGTGGTACAAGAAGCTAACCAAATATTACAAGCCAGTAGATTTTCGCTTCCTCCTGTTATGCATAAAGTGCAGAGCTCTCCCAGCCTTTCTGGTAATCTTAATCTTCAACAATACCACAACCTAAACTTTGCTCACCGTCACCACCAGGGTGGTGGTGGTGGATACCATTACCAACAACCCCAAAGTGGCCACTACCAAATCTCTAGAAGCCTATCAAGAAACTCGCACCCCCACAACCACAGTAGAGGTGGTCTAGGCAGTCCCACCCCGCCCCATATGTCTCCCAGGGGAAGATCCGAGTCAGGGAGCGTGAGGAGCTTGATGGGTCAGTCTCGTCATAATTCGGGTTGCAGTAGCCCGAGACAACAAAACCAAAGACCAAATGCAGGAGAAGGCAACGATTATTGTGATGATCCATATGGCTACAACAGGGTTGATAGAGCTGAGAGTCTTCCAACAAGTCCTCGACAATGTTATCTAGGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

240

Amino Acids

26.02

Weight (kDa)

9.15

Isoelectric Point (pI)

88.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016581)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49920
fragaria_vesca FvH4_5g28590
malus_domestica MD15G1436100.v1.1
prunus_persica Prupe.1G579900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220591
rosa_laevigata RLG00000002215
rosa_multiflora Rmu_ssc0000189.1_g000028
rosa_roxburghii Rroxscaffold_3G00239280
rosa_rugosa Rorug07G0195200
rosa_samantha Rh7AG336200 Rh7BG327300 Rh7CG353900 Rh7DG332500
rosa_wichuraiana Rw7G028680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 2 cut(s) 25, 232
AciI CCGC 1 cut(s) 503
AclWI GGATC 3 cut(s) 220, 522, 641
AcoI YGGCCR 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 6 cut(s) 25, 209, 232, 419, 537, 620
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 2 cut(s) 378, 518
AleI CACNNNNGTG 1 cut(s) 381
AluBI AGCT 7 cut(s) 31, 180, 248, 309, 552, 677, 720
AluI AGCT 7 cut(s) 31, 180, 248, 309, 552, 677, 720
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 3 cut(s) 519, 570, 589
AlwI GGATC 3 cut(s) 220, 522, 641
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 1 cut(s) 421
ApeKI GCWGC 7 cut(s) 15, 37, 105, 129, 144, 147, 165
AsuHPI GGTGA 2 cut(s) 359, 365
AsuNHI GCTAGC 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 592
BalI TGGCCA 1 cut(s) 423
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 7 cut(s) 27, 49, 117, 141, 156, 159, 177
BccI CCATC 2 cut(s) 62, 550
BciT130I CCWGG 2 cut(s) 380, 520
BciVI GTATCC 1 cut(s) 389
BcoDI GTCTC 3 cut(s) 519, 570, 589
BfaI CTAG 6 cut(s) 32, 177, 438, 488, 713, 721
BfmI CTRYAG 1 cut(s) 163
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 7 cut(s) 16, 38, 106, 130, 145, 148, 166
BlsI GCNGC 7 cut(s) 17, 39, 107, 131, 146, 149, 167
Bme1390I CCNGG 2 cut(s) 380, 520
BmeT110I CYCGRG 1 cut(s) 592
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 380, 520
BmtI GCTAGC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 379, 518, 519
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 209, 232, 419, 537, 620
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 380, 520
BseDI CCNNGG 3 cut(s) 379, 518, 519
BseLI CCNNNNNNNGG 6 cut(s) 25, 209, 232, 419, 537, 620
BseMII CTCAG 1 cut(s) 669
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 7 cut(s) 27, 49, 117, 141, 156, 159, 177
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 323
BshFI GGCC 1 cut(s) 423
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 6 cut(s) 25, 209, 232, 419, 537, 620
BsmAI GTCTC 3 cut(s) 519, 570, 589
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 1 cut(s) 423
BsoBI CYCGRG 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 3 cut(s) 212, 527, 646
BspACI CCGC 1 cut(s) 503
BspANI GGCC 1 cut(s) 423
BspCNI CTCAG 1 cut(s) 670
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 1 cut(s) 167
BspOI GCTAGC 1 cut(s) 180
BspPI GGATC 3 cut(s) 220, 522, 641
BspT107I GGYRCC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 379, 518, 519
BssMI GATC 3 cut(s) 212, 527, 646
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 380, 520
Bst4CI ACNGT 2 cut(s) 371, 476
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 121, 178
BstDEI CTNAG 1 cut(s) 678
BstKTI GATC 3 cut(s) 215, 530, 649
BstMAI GTCTC 3 cut(s) 519, 570, 589
BstMBI GATC 3 cut(s) 212, 527, 646
BstMWI GCNNNNNNNGC 5 cut(s) 37, 129, 301, 315, 549
BstNI CCWGG 2 cut(s) 380, 520
BstSCI CCNGG 2 cut(s) 378, 518
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 7 cut(s) 27, 49, 117, 141, 156, 159, 177
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 1 cut(s) 527
BstXI CCANNNNNNTGG 2 cut(s) 383, 386
BstYI RGATCY 1 cut(s) 527
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 121, 178
Cfr10I RCCGGY 1 cut(s) 119
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 239
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 678
DpnI GATC 3 cut(s) 214, 529, 648
DpnII GATC 3 cut(s) 212, 527, 646
EaeI YGGCCR 1 cut(s) 421
Ecl136II GAGCTC 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 592
EcoICRI GAGCTC 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 378, 518
EcoT22I ATGCAT 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 311
FaqI GGGAC 1 cut(s) 480
FauI CCCGC 1 cut(s) 510
FauNDI CATATG 2 cut(s) 510, 652
Fnu4HI GCNGC 7 cut(s) 16, 38, 106, 130, 145, 148, 166
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 7 cut(s) 16, 38, 106, 130, 145, 148, 166
FspBI CTAG 6 cut(s) 32, 177, 438, 488, 713, 721
GluI GCNGC 7 cut(s) 16, 38, 106, 130, 145, 148, 166
GsaI CCCAGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 423
HapII CCGG 1 cut(s) 120
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
HinfI GANTC 2 cut(s) 533, 682
HpaII CCGG 1 cut(s) 120
HphI GGTGA 2 cut(s) 359, 365
Hpy188I TCNGA 1 cut(s) 532
Hpy188III TCNNGA 3 cut(s) 210, 438, 450
HpyAV CCTTC 1 cut(s) 620
HpyCH4III ACNGT 2 cut(s) 371, 476
HpyCH4V TGCA 6 cut(s) 144, 165, 295, 304, 585, 620
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 129, 301, 315, 549
HpyF3I CTNAG 1 cut(s) 678
Hsp92I GRCGYC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 212, 527, 646
LmnI GCTCC 3 cut(s) 28, 540, 549
Lsp1109I GCAGC 7 cut(s) 27, 49, 117, 141, 156, 159, 177
MaeI CTAG 6 cut(s) 32, 177, 438, 488, 713, 721
MaeIII GTNAC 2 cut(s) 41, 371
MalI GATC 3 cut(s) 214, 529, 648
MboI GATC 3 cut(s) 212, 527, 646
MboII GAAGA 4 cut(s) 189, 329, 537, 677
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 2 cut(s) 139, 574
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 2 cut(s) 542, 691
MmeI TCCRAC 1 cut(s) 713
MnlI CCTC 7 cut(s) 103, 120, 196, 294, 473, 540, 708
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 297
MroNI GCCGGC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 423
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 380, 520
MvaI CCWGG 2 cut(s) 380, 520
MwoI GCNNNNNNNGC 5 cut(s) 37, 129, 301, 315, 549
NaeI GCCGGC 1 cut(s) 121
NdeI CATATG 2 cut(s) 510, 652
NdeII GATC 3 cut(s) 212, 527, 646
NgoMIV GCCGGC 1 cut(s) 119
NheI GCTAGC 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 297
OliI CACNNNNGTG 1 cut(s) 381
PasI CCCWGGG 1 cut(s) 519
PdiI GCCGGC 1 cut(s) 121
PflMI CCANNNNNTGG 2 cut(s) 25, 232
PkrI GCNGC 7 cut(s) 17, 39, 107, 131, 146, 149, 167
PleI GAGTC 2 cut(s) 541, 690
PpsI GAGTC 2 cut(s) 541, 690
Psp124BI GAGCTC 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 378, 518
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 378, 518
PspN4I GGNNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 527
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 7 cut(s) 16, 38, 106, 130, 145, 148, 166
Sau3AI GATC 3 cut(s) 212, 527, 646
SchI GAGTC 2 cut(s) 542, 691
ScrFI CCNGG 2 cut(s) 380, 520
SduI GDGCHC 1 cut(s) 311
SetI ASST 9 cut(s) 33, 182, 250, 311, 357, 484, 554, 679, 722
SfcI CTRYAG 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 2 cut(s) 139, 574
SsiI CCGC 1 cut(s) 503
SspI AATATT 1 cut(s) 258
SspMI CTAG 6 cut(s) 32, 177, 438, 488, 713, 721
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 378, 518
TaaI ACNGT 2 cut(s) 371, 476
TaqI TCGA 2 cut(s) 77, 700
TasI AATT 2 cut(s) 139, 574
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 7 cut(s) 15, 37, 105, 129, 144, 147, 165
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 59
Van91I CCANNNNNTGG 2 cut(s) 25, 232
XbaI TCTAGA 1 cut(s) 437
XcmI CCANNNNNNNNNTGG 3 cut(s) 383, 386, 479
XspI CTAG 6 cut(s) 32, 177, 438, 488, 713, 721
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.