Prupe.2G003200_v2.0.a1

Pectinesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012356
Physical Location & Seq
Reverse (-)
351856 .. 352376
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G003200.1

Sequence Viewer

Length: 501 bp
ATGCCGGGAATGCAAGGGTGGCAAGCGGTAGCGTTTAGGATATCAGGTGACAAGGCATACTTCTCAGGTTGTGGCTTCTATCGTGCCCAAGACACACTTTGTGACGATGTGGGGCGCCATTACTTCAAGGATTGTTACATTGAGGGTTCCATAGACTTCATTTTTGGGAATGGTCGGTCCATGTACAAAGACTGTGAGCTGTACTCGATAGCAACCAAGTTCGGGTCAATTGCGGCCCACTACAGAAACTCAGCGGATGATAAATCAGGCTTCGCTTTCATGAACTGCCGAGTTACGGGCATGGGTCCTTTGTATGTGGGTCGGGCCATGGGCAAGTACTCCCGGATCGTATACTCCTACACCTACTTTGATGACGTTGTCACTCATGGTGCCTGGGATGACTGGGGCAACACAACCGCCAGCACTACAACAAAGACACCGCTTTTATGCAGCTTGAGGAGAAGGTTCGGTGACGGAGATGTAAAAGAAAGCAACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pectinesterase

Protein Analysis

167

Amino Acids

18.67

Weight (kDa)

7.57

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47500
fragaria_vesca FvH4_5g18880 FvH4_5g18880 FvH4_5g18880 FvH4_5g18880 FvH4_5g18880
malus_domestica MD06G1058600.v1.1
prunus_persica Prupe.2G003200_v2.0.a1 Prupe.5G069600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203261
rosa_laevigata RLG00000003539
rosa_multiflora Rmu_sc0020346.1_g000001
rosa_roxburghii Rroxscaffold_3G00253900
rosa_rugosa Rorug07G0075400
rosa_samantha Rh7AG204900 Rh7BG204300 Rh7CG215900 Rh7DG211500
rosa_wichuraiana Rw7G017840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 114, 389
AccI GTMKAC 1 cut(s) 351
AciI CCGC 5 cut(s) 26, 233, 254, 417, 440
AclWI GGATC 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 115
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 3 cut(s) 185, 203, 338
AfiI CCNNNNNNNGG 2 cut(s) 222, 295
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 2 cut(s) 199, 453
AluI AGCT 2 cut(s) 199, 453
AlwI GGATC 1 cut(s) 353
AoxI GGCC 2 cut(s) 234, 324
ApeKI GCWGC 1 cut(s) 450
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 4 cut(s) 177, 235, 305, 324
AsuC2I CCSGG 2 cut(s) 6, 343
AsuHPI GGTGA 2 cut(s) 59, 482
AvaII GGWCC 2 cut(s) 177, 305
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 2 cut(s) 114, 389
BbvI GCAGC 1 cut(s) 462
BciT130I CCWGG 1 cut(s) 394
BcnI CCSGG 2 cut(s) 6, 343
BfmI CTRYAG 1 cut(s) 241
BfoI RGCGCY 1 cut(s) 118
BisI GCNGC 2 cut(s) 234, 451
BlsI GCNGC 2 cut(s) 235, 452
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 3 cut(s) 6, 343, 394
Bme18I GGWCC 2 cut(s) 177, 305
BmgT120I GGNCC 4 cut(s) 177, 235, 305, 324
BmiI GGNNCC 4 cut(s) 116, 148, 306, 391
BmrFI CCNGG 3 cut(s) 6, 343, 394
BmrI ACTGGG 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 412
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 2 cut(s) 6, 343
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 327, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 295
Bse1I ACTGG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 2 cut(s) 327, 393
BseGI GGATG 2 cut(s) 262, 403
BseLI CCNNNNNNNGG 2 cut(s) 222, 295
BseMII CTCAG 2 cut(s) 78, 264
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 472
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 462
BshFI GGCC 2 cut(s) 236, 326
BshNI GGYRCC 2 cut(s) 114, 389
BsiSI CCGG 2 cut(s) 5, 343
BslI CCNNNNNNNGG 2 cut(s) 222, 295
BsmI GAATGC 1 cut(s) 15
BsnI GGCC 2 cut(s) 236, 326
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1407I TGTACA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 5 cut(s) 26, 233, 254, 417, 440
BspANI GGCC 2 cut(s) 236, 326
BspCNI CTCAG 2 cut(s) 77, 263
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 116, 148, 306, 391
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 2 cut(s) 114, 389
BsrGI TGTACA 1 cut(s) 183
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 2 cut(s) 327, 393
BssMI GATC 1 cut(s) 345
BssNAI GTATAC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 327
Bst1107I GTATAC 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 24, 421
BstDEI CTNAG 2 cut(s) 64, 250
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 262, 403
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 1 cut(s) 348
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 2 cut(s) 10, 19
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 4, 341, 392
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 462
BstZ17I GTATAC 1 cut(s) 352
BsuRI GGCC 2 cut(s) 236, 326
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 262, 403
Cac8I GCNNGC 2 cut(s) 24, 421
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 4 cut(s) 177, 235, 305, 324
Csp6I GTAC 3 cut(s) 184, 202, 337
CviAII CATG 5 cut(s) 181, 280, 301, 328, 386
CviJI RGCY 6 cut(s) 75, 199, 236, 270, 326, 453
CviKI_1 RGCY 6 cut(s) 75, 199, 236, 270, 326, 453
CviQI GTAC 3 cut(s) 184, 202, 337
DdeI CTNAG 2 cut(s) 64, 250
DinI GGCGCC 1 cut(s) 116
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 327
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 177, 305
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 392
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 327
EgeI GGCGCC 1 cut(s) 116
EheI GGCGCC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 5 cut(s) 184, 283, 304, 331, 389
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 81, 113
FatI CATG 5 cut(s) 180, 279, 300, 327, 385
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 234, 451
FokI GGATG 2 cut(s) 269, 410
Fsp4HI GCNGC 2 cut(s) 234, 451
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 234, 451
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 2 cut(s) 236, 326
HapII CCGG 2 cut(s) 5, 343
HhaI GCGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 5 cut(s) 184, 283, 304, 331, 389
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HpaII CCGG 2 cut(s) 5, 343
HphI GGTGA 2 cut(s) 59, 482
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 2 cut(s) 13, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 19
HpyF3I CTNAG 2 cut(s) 64, 250
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 5 cut(s) 184, 283, 304, 331, 389
HspAI GCGC 1 cut(s) 115
KasI GGCGCC 1 cut(s) 114
Kzo9I GATC 1 cut(s) 345
LpnPI CCDG 9 cut(s) 18, 30, 51, 252, 356, 379, 388, 406, 433
Lsp1109I GCAGC 1 cut(s) 462
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 6 cut(s) 47, 101, 134, 292, 379, 470
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 228
Mly113I GGCGCC 1 cut(s) 115
MnlI CCTC 2 cut(s) 136, 450
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 2 cut(s) 5, 343
MspR9I CCNGG 3 cut(s) 6, 343, 394
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 10, 19
NarI GGCGCC 1 cut(s) 115
NciI CCSGG 2 cut(s) 6, 343
NcoI CCATGG 1 cut(s) 327
NdeII GATC 1 cut(s) 345
NlaIII CATG 5 cut(s) 184, 283, 304, 331, 389
NlaIV GGNNCC 4 cut(s) 116, 148, 306, 391
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 4 cut(s) 47, 101, 379, 470
PagI TCATGA 1 cut(s) 279
PctI GAATGC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 341
PkrI GCNGC 2 cut(s) 235, 452
PluTI GGCGCC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 4 cut(s) 116, 148, 306, 391
PspPI GGNCC 4 cut(s) 177, 235, 305, 324
PspPPI RGGWCCY 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 3 cut(s) 185, 203, 338
RsaNI GTAC 3 cut(s) 184, 202, 337
SatI GCNGC 2 cut(s) 234, 451
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 4 cut(s) 177, 235, 305, 324
ScaI AGTACT 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 6, 343, 394
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 49, 70, 201, 365, 378, 455, 467
SfcI CTRYAG 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 116
SinI GGWCC 2 cut(s) 177, 305
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 1 cut(s) 228
SsiI CCGC 5 cut(s) 26, 233, 254, 417, 440
SspDI GGCGCC 1 cut(s) 114
StyD4I CCNGG 3 cut(s) 4, 341, 392
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 378
TaqI TCGA 1 cut(s) 206
TaqII GACCGA 1 cut(s) 165
TasI AATT 1 cut(s) 228
TatI WGTACW 3 cut(s) 183, 201, 336
TauI GCSGC 1 cut(s) 236
TseFI GTSAC 4 cut(s) 47, 101, 379, 470
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 4 cut(s) 47, 101, 379, 470
TspDTI ATGAA 3 cut(s) 148, 268, 296
TspGWI ACGGA 1 cut(s) 489
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 177, 305
XmiI GTMKAC 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.