Prupe.2G048500_v2.0.a1

khg kdpg

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014787
Physical Location & Seq
Forward (+)
5586540 .. 5592668
6129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G048500.1

Sequence Viewer

Length: 789 bp
ATGGCGAGTACGAGTCTGAGCATCGTACGGCCTTTGGCTTCTCCCCCTGGCCTTCAAATATCACCGCCACAGCTACCGCCTCGGCCAAACCGCCTTCGGGTTTGTTGCTTCTCTCGTGGGATTTCTACTGAGAAAACCTTGACGCAGATTGAGAGTTCAGGTGTCATCGCCTGCCTTCGGGCCAATAGTGCAGAGCTGGCAATTGAAGCTGCGTGTGCTGCACTTCATGGTGGTATTTCAGTTCTGGAGATTGTGATGTCGACCCCAGGTGTGTTTGAGGTTCTACAGCAGCTAGTACATGACCATCCTACAAGAGTCCTAGGGGTAGGAACTGTACTAAATGTTGAGGATGCCAAAAGGGCAATGATAGCAGGAGCCAAGTTTCTTATGAGTCCTGCTATGGTTAAGGACATTTTGGATGATTTTCAATATAGTGGAGTTTTATACATACCTGGTGTTATGACCCCAACAGAGATATTGTCTGCATATGATGCTGGTGCCAAAATTGTCAAGGTTTATCCTGTTTCTGCATTAGGTGGCTCACAATATATATCAGCTATCAAGAAGCCTTTTCCCCATATCTCAATGGTTGCTTCTCAAGGCATAACAACAGATTCAGTTGGGGATTATATTGCTCAGGGAGCATCGTCGGTTGTTTTATCAGATGCCATATTTGATAAAGAAGCAATGGGTCAAAAAAATTTCACTAAAATCTATCAACTTGCAAATGCCGCAGCTTTGCATGGCAATGAAGCTGTAGACCGGGGTCAGCAATATACTTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldolase

Protein Analysis

263

Amino Acids

27.69

Weight (kDa)

6.51

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04260 FvH4_7g04260 FvH4_7g04260
malus_domestica MD02G1272300.v1.1
prunus_persica Prupe.2G048500_v2.0.a1
pyrus_communis pycom02g23290
rosa_chinensis RchiOBHm_Chr1g0328821
rosa_laevigata RLG00000029917
rosa_multiflora Rmu_sc0004856.1_g000008
rosa_roxburghii Rroxscaffold_4G00321360
rosa_rugosa Rorug01G0075900 Rorug01G0075900
rosa_samantha Rh1AG095100 Rh1BG075600 Rh1CG092200 Rh1DG098300
rosa_wichuraiana Rw1G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 497
AccI GTMKAC 2 cut(s) 260, 759
AciI CCGC 4 cut(s) 65, 77, 91, 732
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 700
AfaI GTAC 4 cut(s) 10, 27, 297, 336
AfiI CCNNNNNNNGG 2 cut(s) 97, 177
AgsI TTSAA 3 cut(s) 56, 206, 428
AjnI CCWGG 3 cut(s) 46, 265, 451
AluBI AGCT 7 cut(s) 73, 196, 209, 292, 557, 737, 755
AluI AGCT 7 cut(s) 73, 196, 209, 292, 557, 737, 755
AoxI GGCC 4 cut(s) 29, 49, 83, 180
ApeKI GCWGC 4 cut(s) 209, 218, 289, 734
ApoI RAATTY 1 cut(s) 700
AspA2I CCTAGG 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 1 cut(s) 54
AvrII CCTAGG 1 cut(s) 319
BanI GGYRCC 1 cut(s) 497
BauI CACGAG 1 cut(s) 114
BbvI GCAGC 4 cut(s) 196, 205, 301, 746
BccI CCATC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 3 cut(s) 48, 267, 453
BcnI CCSGG 1 cut(s) 764
BfaI CTAG 2 cut(s) 293, 320
BfmI CTRYAG 2 cut(s) 284, 756
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 5 cut(s) 210, 219, 290, 732, 735
BlnI CCTAGG 1 cut(s) 319
BlsI GCNGC 5 cut(s) 211, 220, 291, 733, 736
Bme1390I CCNGG 4 cut(s) 48, 267, 453, 764
BmgT120I GGNCC 1 cut(s) 180
BmiI GGNNCC 2 cut(s) 376, 499
BmrFI CCNGG 4 cut(s) 48, 267, 453, 764
BmsI GCATC 5 cut(s) 30, 340, 481, 653, 655
BoxI GACNNNNGTC 1 cut(s) 765
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 764
BsaJI CCNNGG 5 cut(s) 46, 80, 265, 319, 763
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 177
Bse3DI GCAATG 3 cut(s) 369, 693, 754
BseBI CCWGG 3 cut(s) 48, 267, 453
BseDI CCNNGG 5 cut(s) 46, 80, 265, 319, 763
BseGI GGATG 3 cut(s) 304, 355, 424
BseLI CCNNNNNNNGG 2 cut(s) 97, 177
BseMI GCAATG 3 cut(s) 369, 693, 754
BseMII CTCAG 3 cut(s) 8, 120, 650
BseXI GCAGC 4 cut(s) 196, 205, 301, 746
BsgI GTGCAG 2 cut(s) 204, 210
BshFI GGCC 4 cut(s) 31, 51, 85, 182
BshNI GGYRCC 1 cut(s) 497
BsiSI CCGG 1 cut(s) 763
BsiWI CGTACG 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 97, 177
BsnI GGCC 4 cut(s) 31, 51, 85, 182
BspACI CCGC 4 cut(s) 65, 77, 91, 732
BspANI GGCC 4 cut(s) 31, 51, 85, 182
BspCNI CTCAG 3 cut(s) 9, 121, 649
BspLI GGNNCC 2 cut(s) 376, 499
BspT107I GGYRCC 1 cut(s) 497
BsrDI GCAATG 3 cut(s) 369, 693, 754
BssECI CCNNGG 5 cut(s) 46, 80, 265, 319, 763
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 3 cut(s) 48, 267, 453
Bst4CI ACNGT 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 172, 198
BstDEI CTNAG 3 cut(s) 17, 129, 636
BstF5I GGATG 3 cut(s) 304, 355, 424
BstNI CCWGG 3 cut(s) 48, 267, 453
BstPAI GACNNNNGTC 1 cut(s) 765
BstSCI CCNGG 4 cut(s) 46, 265, 451, 762
BstSFI CTRYAG 2 cut(s) 284, 756
BstV1I GCAGC 4 cut(s) 196, 205, 301, 746
BsuRI GGCC 4 cut(s) 31, 51, 85, 182
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 304, 355, 424
Cac8I GCNNGC 2 cut(s) 172, 198
Cfr13I GGNCC 1 cut(s) 180
CseI GACGC 1 cut(s) 151
CsiI ACCWGGT 1 cut(s) 451
Csp6I GTAC 4 cut(s) 9, 26, 296, 335
CviAII CATG 3 cut(s) 227, 299, 743
CviQI GTAC 4 cut(s) 9, 26, 296, 335
DdeI CTNAG 3 cut(s) 17, 129, 636
EaeI YGGCCR 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 46, 265, 451
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 3 cut(s) 230, 302, 746
FatI CATG 3 cut(s) 226, 298, 742
FauNDI CATATG 1 cut(s) 487
FblI GTMKAC 2 cut(s) 260, 759
Fnu4HI GCNGC 5 cut(s) 210, 219, 290, 732, 735
FokI GGATG 3 cut(s) 291, 362, 431
Fsp4HI GCNGC 5 cut(s) 210, 219, 290, 732, 735
FspBI CTAG 2 cut(s) 293, 320
GluI GCNGC 5 cut(s) 210, 219, 290, 732, 735
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 4 cut(s) 31, 51, 85, 182
HapII CCGG 1 cut(s) 763
HgaI GACGC 1 cut(s) 151
Hin1II CATG 3 cut(s) 230, 302, 746
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 4 cut(s) 13, 315, 391, 614
HpaII CCGG 1 cut(s) 763
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 261, 760
Hpy188I TCNGA 2 cut(s) 18, 664
Hpy188III TCNNGA 2 cut(s) 245, 562
Hpy8I GTNNAC 2 cut(s) 261, 760
Hpy99I CGWCG 1 cut(s) 652
HpyAV CCTTC 3 cut(s) 62, 104, 185
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 6 cut(s) 191, 221, 485, 530, 725, 742
HpyF3I CTNAG 3 cut(s) 17, 129, 636
Hsp92II CATG 3 cut(s) 230, 302, 746
LmnI GCTCC 2 cut(s) 374, 641
Lsp1109I GCAGC 4 cut(s) 196, 205, 301, 746
LweI GCATC 5 cut(s) 30, 340, 481, 653, 655
MabI ACCWGGT 1 cut(s) 451
MaeI CTAG 2 cut(s) 293, 320
MfeI CAATTG 2 cut(s) 201, 784
MluCI AATT 4 cut(s) 201, 504, 700, 784
MlyI GAGTC 3 cut(s) 22, 324, 400
MnlI CCTC 3 cut(s) 90, 271, 340
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 747
MspI CCGG 1 cut(s) 763
MspR9I CCNGG 4 cut(s) 48, 267, 453, 764
MunI CAATTG 2 cut(s) 201, 784
MvaI CCWGG 3 cut(s) 48, 267, 453
NciI CCSGG 1 cut(s) 764
NdeI CATATG 1 cut(s) 487
NlaIII CATG 3 cut(s) 230, 302, 746
NlaIV GGNNCC 2 cut(s) 376, 499
NmeAIII GCCGAG 1 cut(s) 61
PfeI GAWTC 1 cut(s) 614
Pfl23II CGTACG 1 cut(s) 25
PkrI GCNGC 5 cut(s) 211, 220, 291, 733, 736
PleI GAGTC 3 cut(s) 21, 323, 399
PpsI GAGTC 3 cut(s) 21, 323, 399
PshAI GACNNNNGTC 1 cut(s) 765
Psp6I CCWGG 3 cut(s) 46, 265, 451
PspGI CCWGG 3 cut(s) 46, 265, 451
PspLI CGTACG 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 376, 499
PspPI GGNCC 1 cut(s) 180
RsaI GTAC 4 cut(s) 10, 27, 297, 336
RsaNI GTAC 4 cut(s) 9, 26, 296, 335
RseI CAYNNNNRTG 1 cut(s) 747
SalI GTCGAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 5 cut(s) 210, 219, 290, 732, 735
Sau96I GGNCC 1 cut(s) 180
SchI GAGTC 3 cut(s) 22, 324, 400
ScrFI CCNGG 4 cut(s) 48, 267, 453, 764
SexAI ACCWGGT 1 cut(s) 451
SfaNI GCATC 5 cut(s) 30, 340, 481, 653, 655
SfcI CTRYAG 2 cut(s) 284, 756
SmiMI CAYNNNNRTG 1 cut(s) 747
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
Sse9I AATT 4 cut(s) 201, 504, 700, 784
SsiI CCGC 4 cut(s) 65, 77, 91, 732
SspMI CTAG 2 cut(s) 293, 320
StyD4I CCNGG 4 cut(s) 46, 265, 451, 762
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 1 cut(s) 260
TasI AATT 4 cut(s) 201, 504, 700, 784
TatI WGTACW 2 cut(s) 295, 334
TauI GCSGC 1 cut(s) 734
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseI GCWGC 4 cut(s) 209, 218, 289, 734
TspDTI ATGAA 2 cut(s) 215, 765
XapI RAATTY 1 cut(s) 700
XmaJI CCTAGG 1 cut(s) 319
XmiI GTMKAC 2 cut(s) 260, 759
XspI CTAG 2 cut(s) 293, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.