Rh1CG092200

khg kdpg

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014787
Physical Location & Seq
Forward (+)
19723577 .. 19737679
14103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG092200.1

Sequence Viewer

Length: 960 bp
ATGGCGACTGCAAAGAGTTTGATGAGAAGCCCTTTCGCTTCTCTCAGTAGTAGTTTTATGTTTAAGAGCTCACCACCTCCGTTGCCCTGCCGACCACATCGCCTTAGGGTTTGTTGCTCGTCTATCGAGAAAACGTTGACGGAAGTTGATAGCTCAGGCGTCATCGCATGTCTTCGCGCCAACAGTGCAGAGCTGGCATATGAAGCTGCTTGTGCTGCTCTTGAAGGCGGCATTTCAGTTCTCGAGATTGTGATGTCGACACCAGGTGTGATTGAGGTTCTACAGCAGCTGGTACATATCTACCCTACGAGAGTCCTAGGAGTAGGGACGGTACTAAACATTGAGGATGCGGAAAGGGCAGTGACAGCTGGAGCCAAGTTTTTCATGAGTCCTGTTATAGTGAAGGATATTATGGATGATTTTCGGTATGGGGATGTTTTGTACATACCTGGAGTTATGACTCCAACAGAGATTTTGTCTGCCTATGATGCTGGTGCAAAAATTGTGAAGATTTATCCTGTTTCTGCATTAGGCGGCATACACTATATATCAGCCATCAAGAAACCTTTTCCTCACATCTCAATGGTTGCTTCTCAAGGCATAACAATAGCTTCAGCTGGGGAATATATTGCTAAGGGAGCATCTTCAGTTGTTTTATCAGATGCCATATTTGATAAAGAAGCAATGGGTCAAAAGAATTTCAATAGAATACATCAACTCGCGAACATGGCAGCTTTGCAGTGCAAGGAAGCAGTAGATCGGGCTTATAATCTACAGCAGCATTTTTTGTCGTTTCTGAGAGGATTTCTCTTCTCTCTTTGGATCGGATCGTGGATCAGCGATTTTGATTTGCACTTGCAACTGATGGATGTCACGGTGGACGATTCCGTTCTCAGCTTCGCTGTCACAGTTGGCGCTCAGCTCAGTTCGAGCTTTGGGGTTGGATCTTGGTGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldolase

Protein Analysis

319

Amino Acids

34.48

Weight (kDa)

5.97

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldolase PF01081 52 - 240 2.2e-34 KDPG and KHG aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04260 FvH4_7g04260 FvH4_7g04260
malus_domestica MD02G1272300.v1.1
prunus_persica Prupe.2G048500_v2.0.a1
pyrus_communis pycom02g23290
rosa_chinensis RchiOBHm_Chr1g0328821
rosa_laevigata RLG00000029917
rosa_multiflora Rmu_sc0004856.1_g000008
rosa_roxburghii Rroxscaffold_4G00321360
rosa_rugosa Rorug01G0075900 Rorug01G0075900
rosa_samantha Rh1AG095100 Rh1BG075600 Rh1CG092200 Rh1DG098300
rosa_wichuraiana Rw1G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 768
AccI GTMKAC 1 cut(s) 257
AccII CGCG 2 cut(s) 177, 722
AciI CCGC 3 cut(s) 228, 350, 534
AclI AACGTT 1 cut(s) 134
AclWI GGATC 4 cut(s) 830, 835, 842, 952
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 2 cut(s) 597, 630
AcyI GRCGYC 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 3 cut(s) 294, 333, 443
AgsI TTSAA 2 cut(s) 224, 703
AjnI CCWGG 2 cut(s) 262, 448
Alw21I GWGCWC 1 cut(s) 71
AlwI GGATC 4 cut(s) 830, 835, 842, 952
AlwNI CAGNNNCTG 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 242
ApeKI GCWGC 5 cut(s) 206, 215, 286, 731, 778
ApoI RAATTY 1 cut(s) 697
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 2 cut(s) 179, 917
AsuHPI GGTGA 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 316
AxyI CCTNAGG 1 cut(s) 104
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 5 cut(s) 193, 202, 298, 743, 790
BccI CCATC 2 cut(s) 563, 859
BciT130I CCWGG 2 cut(s) 264, 450
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 2 cut(s) 281, 773
BfoI RGCGCY 1 cut(s) 918
BisI GCNGC 7 cut(s) 207, 216, 229, 287, 535, 732, 779
BlnI CCTAGG 1 cut(s) 316
BlpI GCTNAGC 1 cut(s) 918
BlsI GCNGC 7 cut(s) 208, 217, 230, 288, 536, 733, 780
Bme1390I CCNGG 2 cut(s) 264, 450
BmeT110I CYCGRG 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 2 cut(s) 264, 450
BmsI GCATC 4 cut(s) 337, 478, 650, 652
BpiI GAAGAC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 792, 824
BpmI CTGGAG 2 cut(s) 390, 471
Bpu10I CCTNAGC 2 cut(s) 154, 633
Bpu1102I GCTNAGC 1 cut(s) 918
BpuEI CTTGAG 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 316
Bse21I CCTNAGG 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 2 cut(s) 264, 450
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 4 cut(s) 352, 421, 439, 874
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 6 cut(s) 58, 168, 788, 907, 932, 937
BseXI GCAGC 5 cut(s) 193, 202, 298, 743, 790
BseYI CCCAGC 1 cut(s) 617
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 2 cut(s) 177, 722
BsiHKAI GWGCWC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 5 cut(s) 757, 822, 827, 834, 944
Bsp1720I GCTNAGC 1 cut(s) 918
Bsp68I TCGCGA 1 cut(s) 722
BspACI CCGC 3 cut(s) 228, 350, 534
BspCNI CTCAG 6 cut(s) 57, 167, 789, 906, 931, 936
BspFNI CGCG 2 cut(s) 177, 722
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 4 cut(s) 830, 835, 842, 952
BsrDI GCAATG 1 cut(s) 690
BsrGI TGTACA 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 5 cut(s) 757, 822, 827, 834, 944
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 2 cut(s) 264, 450
Bst4CI ACNGT 4 cut(s) 185, 331, 877, 910
Bst6I CTCTTC 1 cut(s) 815
BstACI GRCGYC 1 cut(s) 159
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 8 cut(s) 44, 104, 154, 633, 797, 893, 918, 923
BstF5I GGATG 4 cut(s) 352, 421, 439, 874
BstFNI CGCG 2 cut(s) 177, 722
BstH2I RGCGCY 1 cut(s) 918
BstHHI GCGC 2 cut(s) 179, 917
BstKTI GATC 5 cut(s) 760, 825, 830, 837, 947
BstMBI GATC 5 cut(s) 757, 822, 827, 834, 944
BstNI CCWGG 2 cut(s) 264, 450
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 262, 448
BstSFI CTRYAG 2 cut(s) 281, 773
BstUI CGCG 2 cut(s) 177, 722
BstV1I GCAGC 5 cut(s) 193, 202, 298, 743, 790
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 944
BstYI RGATCY 1 cut(s) 944
Bsu36I CCTNAGG 1 cut(s) 104
BtgZI GCGATG 2 cut(s) 83, 148
BtsCI GGATG 4 cut(s) 352, 421, 439, 874
BtsI GCAGTG 2 cut(s) 366, 746
BtsIMutI CAGTG 3 cut(s) 190, 366, 746
BtuMI TCGCGA 1 cut(s) 722
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 289
CciI TCATGA 1 cut(s) 384
CfoI GCGC 2 cut(s) 179, 917
CseI GACGC 1 cut(s) 148
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 3 cut(s) 293, 332, 442
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
CviAII CATG 3 cut(s) 168, 385, 727
CviQI GTAC 3 cut(s) 293, 332, 442
DdeI CTNAG 8 cut(s) 44, 104, 154, 633, 797, 893, 918, 923
DpnI GATC 5 cut(s) 759, 824, 829, 836, 946
DpnII GATC 5 cut(s) 757, 822, 827, 834, 944
DraIII CACNNNGTG 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 815
EarI CTCTTC 1 cut(s) 815
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 597, 630
Eco81I CCTNAGG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 242
EcoICRI GAGCTC 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 262, 448
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 3 cut(s) 171, 388, 730
FaqI GGGAC 1 cut(s) 340
FatI CATG 3 cut(s) 167, 384, 726
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 257
Fnu4HI GCNGC 7 cut(s) 207, 216, 229, 287, 535, 732, 779
FokI GGATG 4 cut(s) 359, 428, 446, 881
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 7 cut(s) 207, 216, 229, 287, 535, 732, 779
FspBI CTAG 1 cut(s) 317
GlaI GCGC 2 cut(s) 178, 916
GluI GCNGC 7 cut(s) 207, 216, 229, 287, 535, 732, 779
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 2 cut(s) 390, 471
HaeII RGCGCY 1 cut(s) 918
HgaI GACGC 1 cut(s) 148
HhaI GCGC 2 cut(s) 179, 917
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 3 cut(s) 171, 388, 730
Hin6I GCGC 2 cut(s) 177, 915
HinP1I GCGC 2 cut(s) 177, 915
HincII GTYRAC 2 cut(s) 138, 258
HindII GTYRAC 2 cut(s) 138, 258
HinfI GANTC 4 cut(s) 312, 388, 460, 884
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 3 cut(s) 138, 258, 880
Hpy188I TCNGA 3 cut(s) 661, 798, 827
Hpy188III TCNNGA 7 cut(s) 127, 221, 242, 244, 385, 559, 721
Hpy8I GTNNAC 3 cut(s) 138, 258, 880
HpyAV CCTTC 2 cut(s) 218, 397
HpyCH4III ACNGT 4 cut(s) 185, 331, 877, 910
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 8 cut(s) 11, 188, 497, 527, 739, 744, 853, 859
HpyF3I CTNAG 8 cut(s) 44, 104, 154, 633, 797, 893, 918, 923
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 3 cut(s) 171, 388, 730
HspAI GCGC 2 cut(s) 177, 915
Kzo9I GATC 5 cut(s) 757, 822, 827, 834, 944
LmnI GCTCC 2 cut(s) 371, 638
Lsp1109I GCAGC 5 cut(s) 193, 202, 298, 743, 790
LweI GCATC 4 cut(s) 337, 478, 650, 652
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 3 cut(s) 361, 871, 904
MalI GATC 5 cut(s) 759, 824, 829, 836, 946
MboI GATC 5 cut(s) 757, 822, 827, 834, 944
MboII GAAGA 4 cut(s) 164, 520, 636, 802
MflI RGATCY 1 cut(s) 944
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 2 cut(s) 501, 697
MlyI GAGTC 3 cut(s) 321, 397, 454
MmeI TCCRAC 2 cut(s) 488, 922
MnlI CCTC 5 cut(s) 87, 268, 337, 582, 794
MseI TTAA 2 cut(s) 63, 958
MslI CAYNNNNRTG 1 cut(s) 581
MspA1I CMGCKG 3 cut(s) 289, 368, 617
MspR9I CCNGG 2 cut(s) 264, 450
MvaI CCWGG 2 cut(s) 264, 450
MvnI CGCG 2 cut(s) 177, 722
NdeI CATATG 1 cut(s) 199
NdeII GATC 5 cut(s) 757, 822, 827, 834, 944
NlaIII CATG 3 cut(s) 171, 388, 730
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 3 cut(s) 361, 871, 904
NruI TCGCGA 1 cut(s) 722
NspI RCATGY 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 242
PagI TCATGA 1 cut(s) 384
PfeI GAWTC 1 cut(s) 884
PkrI GCNGC 7 cut(s) 208, 217, 230, 288, 536, 733, 780
PleI GAGTC 3 cut(s) 320, 396, 454
PpsI GAGTC 3 cut(s) 320, 396, 454
PsiI TTATAA 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 262, 448
PspFI CCCAGC 1 cut(s) 617
PspGI CCWGG 2 cut(s) 262, 448
PspN4I GGNNCC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 944
PvuII CAGCTG 3 cut(s) 289, 368, 617
RruI TCGCGA 1 cut(s) 722
RsaI GTAC 3 cut(s) 294, 333, 443
RsaNI GTAC 3 cut(s) 293, 332, 442
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 71
SalI GTCGAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 63, 958
SatI GCNGC 7 cut(s) 207, 216, 229, 287, 535, 732, 779
Sau3AI GATC 5 cut(s) 757, 822, 827, 834, 944
SchI GAGTC 3 cut(s) 321, 397, 454
ScrFI CCNGG 2 cut(s) 264, 450
SduI GDGCHC 1 cut(s) 71
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 4 cut(s) 337, 478, 650, 652
SfcI CTRYAG 2 cut(s) 281, 773
Sfr274I CTCGAG 1 cut(s) 242
SlaI CTCGAG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 2 cut(s) 242, 594
SmoI CTYRAG 2 cut(s) 242, 594
Sse9I AATT 2 cut(s) 501, 697
SsiI CCGC 3 cut(s) 228, 350, 534
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 262, 448
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 4 cut(s) 185, 331, 877, 910
TaiI ACGT 1 cut(s) 137
TaqI TCGA 4 cut(s) 126, 243, 257, 929
TasI AATT 2 cut(s) 501, 697
TatI WGTACW 1 cut(s) 441
TauI GCSGC 2 cut(s) 231, 537
TfiI GAWTC 1 cut(s) 884
Tru1I TTAA 2 cut(s) 63, 958
Tru9I TTAA 2 cut(s) 63, 958
TscAI CASTG 3 cut(s) 190, 366, 746
TseFI GTSAC 3 cut(s) 361, 871, 904
TseI GCWGC 5 cut(s) 206, 215, 286, 731, 778
Tsp45I GTSAC 3 cut(s) 361, 871, 904
TspDTI ATGAA 2 cut(s) 216, 373
TspGWI ACGGA 3 cut(s) 69, 155, 877
TspRI CASTG 3 cut(s) 190, 366, 746
XapI RAATTY 1 cut(s) 697
XceI RCATGY 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 242
XmaJI CCTAGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 257
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.