pycom02g23290

khg kdpg

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014787
Physical Location & Seq
Reverse (-)
21391623 .. 21396481
4859 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23290.4

Sequence Viewer

Length: 885 bp
ATGTTACCACCAGGGAACACAACTACTCGTGTTTTTTCACAGTTACAGGGAGCAGTGGATATGGCGAGCACGAGTGCGAGTGTAAACATCATACGGCCTTTGTTTTCTCCTGGCCTTCAAATCCCACCACCACCGTTACCACCACCACCTCAGTGGCGGCGACCCCACCGCCTCGGCCTTCGTTGCTTGTCTCGTGCAATTTCTATTGACAAAACCTTGGCGGAGATTGAGAATTCTGGTGTCATCGCCTGCCTTCGCGCCAACAGTGCAGAACTGGCAATTGAAGCTGCTAGTGCTGCATTCCGTGGTGGCATTTCAGTTCTGGAGATTGTGATGTCGACCCCAGGTGTCTTTGAGGTTCTACAGCAGCTAGTACTTGACCATCCTACAAGATTCCTGGGGGTCGGAACTGTACTAAATGTTGACGATGCCAAAAGGGCAATGCTAGCAGGAGCTAACTTTCTTATGAGTCCTGCTATGGTGAAGGGTATTGTGGATGATTTACGGTATAGTGAAGTTTTATACATACCTGGTGTTATGACCCCAACAGAGATATTGTCTGCATATAACACTGGTGCCAAGATTGTCAAGGTATATCCTGTTTCTGCATTAGGTGGCACACAATATATATCAGCCATTAAAAAGCCTTTTCCTCACATCTCAATGGTTGCTTCTCAAGGCATAAAGATAGATGTAGTTGGGGAGTACATTGCTGAGGGAGCATCATCAGTTGTTTTATCAGATGCCATATTTGATAAAGAGGCCATGGATCGAAAAAATTTCAACAGAATATATCAACTTGCGAAGGCCGCAGCTTTGCATGGAAAAGAAGCTGTAGACCGGAAGAAAAAGCTCATGCTGAAGCGTTCGCAGTTGGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldolase

Protein Analysis

295

Amino Acids

31.69

Weight (kDa)

9.49

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04260 FvH4_7g04260 FvH4_7g04260
malus_domestica MD02G1272300.v1.1
prunus_persica Prupe.2G048500_v2.0.a1
pyrus_communis pycom02g23290
rosa_chinensis RchiOBHm_Chr1g0328821
rosa_laevigata RLG00000029917
rosa_multiflora Rmu_sc0004856.1_g000008
rosa_roxburghii Rroxscaffold_4G00321360
rosa_rugosa Rorug01G0075900 Rorug01G0075900
rosa_samantha Rh1AG095100 Rh1BG075600 Rh1CG092200 Rh1DG098300
rosa_wichuraiana Rw1G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 575
AccI GTMKAC 2 cut(s) 338, 837
AccII CGCG 1 cut(s) 258
AciI CCGC 4 cut(s) 157, 169, 221, 810
AclWI GGATC 1 cut(s) 777
AcsI RAATTY 2 cut(s) 232, 778
AcuI CTGAAG 1 cut(s) 881
AfaI GTAC 3 cut(s) 375, 414, 707
AgsI TTSAA 3 cut(s) 119, 284, 784
AjnI CCWGG 5 cut(s) 10, 109, 343, 396, 529
AleI CACNNNNGTG 1 cut(s) 151
AluBI AGCT 6 cut(s) 287, 370, 455, 815, 833, 853
AluI AGCT 6 cut(s) 287, 370, 455, 815, 833, 853
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 777
AoxI GGCC 5 cut(s) 95, 112, 175, 762, 807
ApeKI GCWGC 4 cut(s) 287, 296, 367, 812
ApoI RAATTY 2 cut(s) 232, 778
AspLEI GCGC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 493
AsuNHI GCTAGC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 575
BauI CACGAG 3 cut(s) 27, 70, 192
Bbv12I GWGCWC 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 714
BbvI GCAGC 4 cut(s) 274, 283, 379, 824
BccI CCATC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 5 cut(s) 12, 111, 345, 398, 531
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 3 cut(s) 291, 371, 446
BfmI CTRYAG 2 cut(s) 362, 834
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 6 cut(s) 158, 288, 297, 368, 810, 813
BlsI GCNGC 6 cut(s) 159, 289, 298, 369, 811, 814
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 5 cut(s) 12, 111, 345, 398, 531
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 5 cut(s) 12, 111, 345, 398, 531
BmsI GCATC 3 cut(s) 418, 731, 733
BmtI GCTAGC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 660
BsaJI CCNNGG 7 cut(s) 11, 172, 216, 304, 343, 397, 765
BsaWI WCCGGW 1 cut(s) 840
Bse1I ACTGG 2 cut(s) 279, 577
Bse3DI GCAATG 2 cut(s) 447, 708
BseBI CCWGG 5 cut(s) 12, 111, 345, 398, 531
BseDI CCNNGG 7 cut(s) 11, 172, 216, 304, 343, 397, 765
BseGI GGATG 2 cut(s) 382, 502
BseMI GCAATG 2 cut(s) 447, 708
BseMII CTCAG 2 cut(s) 164, 705
BseNI ACTGG 2 cut(s) 279, 577
BseXI GCAGC 4 cut(s) 274, 283, 379, 824
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 5 cut(s) 97, 114, 177, 764, 809
BshNI GGYRCC 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 841
BsmAI GTCTC 1 cut(s) 195
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 5 cut(s) 97, 114, 177, 764, 809
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 769
Bsp19I CCATGG 1 cut(s) 765
BspACI CCGC 4 cut(s) 157, 169, 221, 810
BspANI GGCC 5 cut(s) 97, 114, 177, 764, 809
BspCNI CTCAG 2 cut(s) 163, 706
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 577
BspOI GCTAGC 1 cut(s) 449
BspPI GGATC 1 cut(s) 777
BspT107I GGYRCC 1 cut(s) 575
BsrDI GCAATG 2 cut(s) 447, 708
BsrI ACTGG 2 cut(s) 279, 577
BssECI CCNNGG 7 cut(s) 11, 172, 216, 304, 343, 397, 765
BssMI GATC 1 cut(s) 769
BssSI CACGAG 3 cut(s) 27, 70, 192
BssT1I CCWWGG 2 cut(s) 216, 765
Bst2BI CACGAG 3 cut(s) 27, 70, 192
Bst2UI CCWGG 5 cut(s) 12, 111, 345, 398, 531
Bst4CI ACNGT 5 cut(s) 42, 135, 266, 412, 507
BstC8I GCNNGC 3 cut(s) 67, 250, 447
BstDEI CTNAG 2 cut(s) 150, 714
BstDSI CCRYGG 2 cut(s) 304, 765
BstF5I GGATG 2 cut(s) 382, 502
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 772
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 769
BstNI CCWGG 5 cut(s) 12, 111, 345, 398, 531
BstSCI CCNGG 5 cut(s) 10, 109, 343, 396, 529
BstSFI CTRYAG 2 cut(s) 362, 834
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 4 cut(s) 274, 283, 379, 824
BstXI CCANNNNNNTGG 1 cut(s) 153
BsuRI GGCC 5 cut(s) 97, 114, 177, 764, 809
BtgI CCRYGG 2 cut(s) 304, 765
BtgZI GCGATG 1 cut(s) 229
BtsCI GGATG 2 cut(s) 382, 502
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 4 cut(s) 60, 158, 271, 570
Cac8I GCNNGC 3 cut(s) 67, 250, 447
CfoI GCGC 1 cut(s) 260
CsiI ACCWGGT 1 cut(s) 529
Csp6I GTAC 3 cut(s) 374, 413, 706
CviAII CATG 3 cut(s) 766, 821, 856
CviQI GTAC 3 cut(s) 374, 413, 706
DdeI CTNAG 2 cut(s) 150, 714
DpnI GATC 1 cut(s) 771
DpnII GATC 1 cut(s) 769
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 216, 765
Eco57I CTGAAG 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 5 cut(s) 10, 109, 343, 396, 529
EcoT14I CCWWGG 2 cut(s) 216, 765
ErhI CCWWGG 2 cut(s) 216, 765
FaeI CATG 3 cut(s) 769, 824, 859
FatI CATG 3 cut(s) 765, 820, 855
FblI GTMKAC 2 cut(s) 338, 837
Fnu4HI GCNGC 6 cut(s) 158, 288, 297, 368, 810, 813
FokI GGATG 2 cut(s) 369, 509
Fsp4HI GCNGC 6 cut(s) 158, 288, 297, 368, 810, 813
FspBI CTAG 3 cut(s) 291, 371, 446
GlaI GCGC 1 cut(s) 259
GluI GCNGC 6 cut(s) 158, 288, 297, 368, 810, 813
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 5 cut(s) 97, 114, 177, 764, 809
HapII CCGG 1 cut(s) 841
HhaI GCGC 1 cut(s) 260
Hin1II CATG 3 cut(s) 769, 824, 859
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 2 cut(s) 339, 424
HindII GTYRAC 2 cut(s) 339, 424
HinfI GANTC 2 cut(s) 393, 469
HpaII CCGG 1 cut(s) 841
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 4 cut(s) 85, 339, 424, 838
Hpy188I TCNGA 2 cut(s) 407, 742
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 4 cut(s) 85, 339, 424, 838
HpyAV CCTTC 5 cut(s) 125, 188, 263, 478, 799
HpyCH4III ACNGT 5 cut(s) 42, 135, 266, 412, 507
HpyCH4V TGCA 6 cut(s) 197, 269, 299, 563, 608, 820
HpyF3I CTNAG 2 cut(s) 150, 714
Hsp92II CATG 3 cut(s) 769, 824, 859
HspAI GCGC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 769
LmnI GCTCC 3 cut(s) 50, 452, 719
Lsp1109I GCAGC 4 cut(s) 274, 283, 379, 824
LweI GCATC 3 cut(s) 418, 731, 733
MabI ACCWGGT 1 cut(s) 529
MaeI CTAG 3 cut(s) 291, 371, 446
MaeIII GTNAC 3 cut(s) 3, 42, 135
MalI GATC 1 cut(s) 771
MboI GATC 1 cut(s) 769
MboII GAAGA 1 cut(s) 856
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 4 cut(s) 198, 232, 279, 778
MlyI GAGTC 1 cut(s) 478
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 6 cut(s) 159, 182, 349, 663, 709, 754
MseI TTAA 1 cut(s) 639
MslI CAYNNNNRTG 2 cut(s) 151, 662
MspI CCGG 1 cut(s) 841
MspR9I CCNGG 5 cut(s) 12, 111, 345, 398, 531
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 5 cut(s) 12, 111, 345, 398, 531
MvnI CGCG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 765
NdeII GATC 1 cut(s) 769
NheI GCTAGC 1 cut(s) 445
NlaIII CATG 3 cut(s) 769, 824, 859
NlaIV GGNNCC 1 cut(s) 577
NmeAIII GCCGAG 1 cut(s) 153
OliI CACNNNNGTG 1 cut(s) 151
PctI GAATGC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 393
PkrI GCNGC 6 cut(s) 159, 289, 298, 369, 811, 814
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
Psp6I CCWGG 5 cut(s) 10, 109, 343, 396, 529
PspGI CCWGG 5 cut(s) 10, 109, 343, 396, 529
PspN4I GGNNCC 1 cut(s) 577
RsaI GTAC 3 cut(s) 375, 414, 707
RsaNI GTAC 3 cut(s) 374, 413, 706
RseI CAYNNNNRTG 2 cut(s) 151, 662
SalI GTCGAC 1 cut(s) 337
SaqAI TTAA 1 cut(s) 639
SatI GCNGC 6 cut(s) 158, 288, 297, 368, 810, 813
Sau3AI GATC 1 cut(s) 769
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 5 cut(s) 12, 111, 345, 398, 531
SduI GDGCHC 1 cut(s) 71
SexAI ACCWGGT 1 cut(s) 529
SfaNI GCATC 3 cut(s) 418, 731, 733
SfcI CTRYAG 2 cut(s) 362, 834
SmiMI CAYNNNNRTG 2 cut(s) 151, 662
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 4 cut(s) 198, 232, 279, 778
SsiI CCGC 4 cut(s) 157, 169, 221, 810
SspMI CTAG 3 cut(s) 291, 371, 446
StyD4I CCNGG 5 cut(s) 10, 109, 343, 396, 529
StyI CCWWGG 2 cut(s) 216, 765
TaaI ACNGT 5 cut(s) 42, 135, 266, 412, 507
TaqI TCGA 2 cut(s) 338, 772
TasI AATT 4 cut(s) 198, 232, 279, 778
TatI WGTACW 3 cut(s) 373, 412, 705
TauI GCSGC 2 cut(s) 160, 812
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 1 cut(s) 639
Tru9I TTAA 1 cut(s) 639
TscAI CASTG 4 cut(s) 60, 158, 271, 577
TseI GCWGC 4 cut(s) 287, 296, 367, 812
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 4 cut(s) 60, 158, 271, 577
XapI RAATTY 2 cut(s) 232, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XmiI GTMKAC 2 cut(s) 338, 837
XspI CTAG 3 cut(s) 291, 371, 446
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.