Rh1DG098300

khg kdpg

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014787
Physical Location & Seq
Forward (+)
18580871 .. 18585325
4455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG098300.1

Sequence Viewer

Length: 543 bp
ATGTCGACACCAGGTGTGATTGAGGTTCTACAGCAGCTGGTACATATCTACCCTACGAGAGTCCTAGGAGTAGGGACGGTACTGAACATTGAGGATGCGGAAAGGGCAGTGACAGCTGGAGCCAAGTTTTTTATGAGTCCTGTTATAGTGAAGGATATTATGGATGATTTTCGGTATGGGGATGTTTTGTACATACCTGGAGTTATGACTCCAACAGAGATTTTGTCTGCCTATGATGCTGGTGCAAAAATTGTGAAGATTTATCCTGTTTCTGCATTAGGCGGCATACACTATATATCAGCCATCAAGAAACCTTTTCCTCACATCTCAATGGTTGCTTCTCAAGGCATAACAATAGGTTCAGCTGGGGAATATATTGCTAAGGGAGCATCTTCAGTTGTTTTATCAGATGCCATATTTGATAAAGAAGCAATGGGTCAAAAGAATTTCAATAGAATACATCAACTCGCGAACATGGCTGCTTTGCAGTGCAAGGAAGCAGTAGATCGGAAGAAAAACCTCATGCTGATCAATAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldolase

Protein Analysis

180

Amino Acids

19.47

Weight (kDa)

7.83

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldolase PF01081 3 - 156 8.5e-28 KDPG and KHG aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04260 FvH4_7g04260 FvH4_7g04260
malus_domestica MD02G1272300.v1.1
prunus_persica Prupe.2G048500_v2.0.a1
pyrus_communis pycom02g23290
rosa_chinensis RchiOBHm_Chr1g0328821
rosa_laevigata RLG00000029917
rosa_multiflora Rmu_sc0004856.1_g000008
rosa_roxburghii Rroxscaffold_4G00321360
rosa_rugosa Rorug01G0075900 Rorug01G0075900
rosa_samantha Rh1AG095100 Rh1BG075600 Rh1CG092200 Rh1DG098300
rosa_wichuraiana Rw1G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 470
AciI CCGC 2 cut(s) 98, 282
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 14
AfaI GTAC 3 cut(s) 42, 81, 191
AgsI TTSAA 1 cut(s) 451
AjnI CCWGG 2 cut(s) 10, 196
AluBI AGCT 3 cut(s) 37, 116, 365
AluI AGCT 3 cut(s) 37, 116, 365
AlwNI CAGNNNCTG 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 34, 479
ApoI RAATTY 1 cut(s) 445
AspA2I CCTAGG 1 cut(s) 64
AvrII CCTAGG 1 cut(s) 64
BbvI GCAGC 2 cut(s) 46, 466
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 12, 198
BclI TGATCA 1 cut(s) 528
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 3 cut(s) 35, 283, 480
BlnI CCTAGG 1 cut(s) 64
BlsI GCNGC 3 cut(s) 36, 284, 481
Bme1390I CCNGG 2 cut(s) 12, 198
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 12, 198
BmsI GCATC 4 cut(s) 85, 226, 398, 400
BpmI CTGGAG 2 cut(s) 138, 219
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 2 cut(s) 12, 198
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 3 cut(s) 100, 169, 187
BseMI GCAATG 1 cut(s) 438
BseXI GCAGC 2 cut(s) 46, 466
BseYI CCCAGC 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 470
BslFI GGGAC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 88
Bsp1407I TGTACA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 505, 528
Bsp68I TCGCGA 1 cut(s) 470
BspACI CCGC 2 cut(s) 98, 282
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 438
BsrGI TGTACA 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 2 cut(s) 505, 528
BssT1I CCWWGG 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 12, 198
Bst4CI ACNGT 1 cut(s) 79
BstAUI TGTACA 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 3 cut(s) 100, 169, 187
BstFNI CGCG 1 cut(s) 470
BstKTI GATC 2 cut(s) 508, 531
BstMBI GATC 2 cut(s) 505, 528
BstMWI GCNNNNNNNGC 5 cut(s) 104, 113, 236, 386, 476
BstNI CCWGG 2 cut(s) 12, 198
BstSCI CCNGG 2 cut(s) 10, 196
BstSFI CTRYAG 1 cut(s) 29
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 2 cut(s) 46, 466
BtsCI GGATG 3 cut(s) 100, 169, 187
BtsI GCAGTG 2 cut(s) 114, 494
BtsIMutI CAGTG 2 cut(s) 114, 494
BtuMI TCGCGA 1 cut(s) 470
CaiI CAGNNNCTG 1 cut(s) 37
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 3 cut(s) 41, 80, 190
CviAII CATG 2 cut(s) 475, 523
CviJI RGCY 6 cut(s) 37, 116, 122, 302, 365, 479
CviKI_1 RGCY 6 cut(s) 37, 116, 122, 302, 365, 479
CviQI GTAC 3 cut(s) 41, 80, 190
DdeI CTNAG 1 cut(s) 381
DpnI GATC 2 cut(s) 507, 530
DpnII GATC 2 cut(s) 505, 528
DraIII CACNNNGTG 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 10, 196
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 2 cut(s) 478, 526
FaqI GGGAC 1 cut(s) 88
FatI CATG 2 cut(s) 474, 522
FbaI TGATCA 1 cut(s) 528
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 35, 283, 480
FokI GGATG 3 cut(s) 107, 176, 194
Fsp4HI GCNGC 3 cut(s) 35, 283, 480
FspBI CTAG 1 cut(s) 65
GluI GCNGC 3 cut(s) 35, 283, 480
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 2 cut(s) 138, 219
Hin1II CATG 2 cut(s) 478, 526
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 60, 136, 208
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 409, 510
Hpy188III TCNNGA 2 cut(s) 307, 469
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 245, 275, 487, 492
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 113, 236, 386, 476
HpyF3I CTNAG 1 cut(s) 381
Hsp92II CATG 2 cut(s) 478, 526
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 2 cut(s) 505, 528
LmnI GCTCC 2 cut(s) 119, 386
LpnPI CCDG 9 cut(s) 23, 24, 102, 153, 183, 210, 225, 279, 351
Lsp1109I GCAGC 2 cut(s) 46, 466
LweI GCATC 4 cut(s) 85, 226, 398, 400
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 109
MalI GATC 2 cut(s) 507, 530
MboI GATC 2 cut(s) 505, 528
MboII GAAGA 3 cut(s) 268, 384, 523
MluCI AATT 3 cut(s) 249, 445, 535
MlyI GAGTC 3 cut(s) 69, 145, 202
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 16, 85, 330, 530
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 3 cut(s) 37, 116, 365
MspR9I CCNGG 2 cut(s) 12, 198
MvaI CCWGG 2 cut(s) 12, 198
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 5 cut(s) 104, 113, 236, 386, 476
NdeII GATC 2 cut(s) 505, 528
NlaIII CATG 2 cut(s) 478, 526
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 109
NruI TCGCGA 1 cut(s) 470
PkrI GCNGC 3 cut(s) 36, 284, 481
PleI GAGTC 3 cut(s) 68, 144, 202
PpsI GAGTC 3 cut(s) 68, 144, 202
Psp6I CCWGG 2 cut(s) 10, 196
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 2 cut(s) 10, 196
PspN4I GGNNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 37
PvuII CAGCTG 3 cut(s) 37, 116, 365
RruI TCGCGA 1 cut(s) 470
RsaI GTAC 3 cut(s) 42, 81, 191
RsaNI GTAC 3 cut(s) 41, 80, 190
RseI CAYNNNNRTG 1 cut(s) 329
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 3 cut(s) 35, 283, 480
Sau3AI GATC 2 cut(s) 505, 528
SchI GAGTC 3 cut(s) 69, 145, 202
ScrFI CCNGG 2 cut(s) 12, 198
SetI ASST 9 cut(s) 16, 27, 39, 118, 199, 316, 361, 367, 522
SexAI ACCWGGT 1 cut(s) 10
SfaNI GCATC 4 cut(s) 85, 226, 398, 400
SfcI CTRYAG 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 342
SmoI CTYRAG 1 cut(s) 342
Sse9I AATT 3 cut(s) 249, 445, 535
SsiI CCGC 2 cut(s) 98, 282
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 2 cut(s) 10, 196
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 249, 445, 535
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 285
TscAI CASTG 2 cut(s) 114, 494
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 34, 479
Tsp45I GTSAC 1 cut(s) 109
TspRI CASTG 2 cut(s) 114, 494
XapI RAATTY 1 cut(s) 445
XmaJI CCTAGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.