Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011443

Physical Location & Seq

Genomic Coordinates Forward (+)

10006286 .. 10010536

Gene Structure 4251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G069600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGATCGGGCGCCGCAATCCCCCAATGGACCTCAGAGCCTTGCATCATGGGCATCGATGAAGCTGGCCGAGGCCCTGTTTTAGGTCCAATGGTGTACGGATGCTTGTACTGTGCTCGCTCGTATGAGAAGACTCTCTCCTCTTTGAATTTTGCAGATTCGAAGACACTGAAAGAAGAGAAGAGGGAGGAATTATTTGAGAATTTGAAGGCTGACGAATCCATTGGGTGGGCTGTTGATATCATAGATCCAAGGGAACTTTCGGCCAAAATGCTGAAGAAAAATAAGATAAACCTGAATGAAATCTCACATGACTCTGCCATTGGCCTTATCACTAAAGTCCTAAACATGGGAGTTCTTCTAACTGAGGTTTATGTGGATACGGTGGGAGATGCTGAGAAGTATAGGACTAAACTGTCTGAAAGATTCCCTGCTGTCAAGTTTGTCGTTGCAAAGAAGGCTGATAGTCTTTATCCAGTTGTCAGTGGGGCAAGCATAGTTGCAAAAGTCACAAGAGACAGAGCTTTGCGGGACTGGGTGCTTGAGGAAACAGCTGAAGACTTGCACAAAGACTTTGGTTCTGGATATCCTGGAGATCCAAATACTAAGGCCTGGTTGCAACATCACAAACACTTGGTTTTTGGATTCCCAACATTGGTCCGTTTCAGCTGGGGTACATGCACTCCCTATTTCAAAGACATTGTTGAAGTCTCATGGGAATCCAATGAAACGGATGGAGATGGTTCTAGCAGTGCTAATGGCAAGCGGCAATTGAAATTAAGTAATTTTGGTGTCACAAAATCCAAAAGAAAGATTGAAGAAATTGAATCAAGTGGTAAAGGACGCTGCAAATTTTTTATGGCTCGTAAACTTGAGCAAGTCACTCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004523 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006273 GO:0006281 GO:0006298 GO:0006401 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0022616 GO:0032299 GO:0032991 GO:0033554 GO:0033567 GO:0034641 GO:0034645 GO:0034655 GO:0043137 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_HII

Protein Analysis

298

Amino Acids

33.15

Weight (kDa)

7.6

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25100 AT2G25100
fragaria_vesca	FvH4_3g27560 FvH4_3g27560
malus_domestica	MD02G1261600.v1.1
prunus_persica	Prupe.2G069600_v2.0.a1 Prupe.2G069600_v2.0.a1
pyrus_communis	pycom02g22370
rosa_chinensis	RchiOBHm_Chr5g0049931
rosa_laevigata	RLG00000034666
rosa_roxburghii	Rroxscaffold_1G00031380
rosa_rugosa	Rorug05G0254300 Rorug05G0254400 Rorug05G0254500 Rorug05G0254600
rosa_samantha	Rh5AG328700 Rh5BG339300 Rh5CG365100 Rh5DG351700
rosa_wichuraiana	Rw5G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	3 cut(s)	15, 529, 766
AclWI	GGATC	3 cut(s)	13, 242, 590
AcoI	YGGCCR	2 cut(s)	67, 264
AcsI	RAATTY	3 cut(s)	148, 202, 851
AcuI	CTGAAG	2 cut(s)	296, 576
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	3 cut(s)	98, 110, 676
AfiI	CCNNNNNNNGG	4 cut(s)	83, 228, 349, 655
AgsI	TTSAA	7 cut(s)	148, 208, 694, 707, 775, 818, 827
AjnI	CCWGG	2 cut(s)	589, 611
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	4 cut(s)	65, 524, 554, 669
AluI	AGCT	4 cut(s)	65, 524, 554, 669
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	510, 715
AlwI	GGATC	3 cut(s)	13, 242, 590
AoxI	GGCC	5 cut(s)	67, 73, 264, 325, 609
ApeKI	GCWGC	1 cut(s)	846
ApoI	RAATTY	3 cut(s)	148, 202, 851
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	4 cut(s)	30, 74, 86, 658
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	3 cut(s)	30, 86, 658
BanI	GGYRCC	1 cut(s)	11
BbsI	GAAGAC	3 cut(s)	137, 170, 564
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	833
BccI	CCATC	2 cut(s)	728, 734
BciT130I	CCWGG	2 cut(s)	591, 613
BciVI	GTATCC	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	510, 715
BfaI	CTAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	373
BisI	GCNGC	3 cut(s)	15, 767, 847
BlsI	GCNGC	3 cut(s)	16, 768, 848
Bme1390I	CCNGG	2 cut(s)	591, 613
Bme18I	GGWCC	3 cut(s)	30, 86, 658
BmgT120I	GGNCC	4 cut(s)	30, 74, 86, 658
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	591, 613
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	4 cut(s)	54, 63, 92, 382
BmuI	ACTGGG	1 cut(s)	544
BpiI	GAAGAC	3 cut(s)	137, 170, 564
BpmI	CTGGAG	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	161
BpuEI	CTTGAG	2 cut(s)	563, 893
Bsa29I	ATCGAT	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	70, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 228, 349, 655
Bse1I	ACTGG	2 cut(s)	476, 539
BseBI	CCWGG	2 cut(s)	591, 613
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	70, 251
BseGI	GGATG	2 cut(s)	107, 739
BseLI	CCNNNNNNNGG	4 cut(s)	83, 228, 349, 655
BseMII	CTCAG	3 cut(s)	48, 357, 387
BseNI	ACTGG	2 cut(s)	476, 539
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	833
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	5 cut(s)	69, 75, 266, 327, 611
BshNI	GGYRCC	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	4 cut(s)	83, 228, 349, 655
BsmAI	GTCTC	2 cut(s)	510, 715
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	5 cut(s)	69, 75, 266, 327, 611
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	5, 247, 595
BspACI	CCGC	3 cut(s)	15, 529, 766
BspANI	GGCC	5 cut(s)	69, 75, 266, 327, 611
BspCNI	CTCAG	3 cut(s)	47, 358, 388
BspDI	ATCGAT	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	3 cut(s)	13, 242, 590
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	476, 539
BssECI	CCNNGG	2 cut(s)	70, 251
BssMI	GATC	3 cut(s)	5, 247, 595
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	591, 613
Bst4CI	ACNGT	3 cut(s)	113, 385, 417
Bst6I	CTCTTC	2 cut(s)	171, 176
BstACI	GRCGYC	1 cut(s)	12
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	4 cut(s)	67, 118, 493, 764
BstDEI	CTNAG	4 cut(s)	34, 366, 396, 606
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	107, 739
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	3 cut(s)	8, 250, 598
BstMAI	GTCTC	2 cut(s)	510, 715
BstMBI	GATC	3 cut(s)	5, 247, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 458
BstNI	CCWGG	2 cut(s)	591, 613
BstNSI	RCATGY	1 cut(s)	681
BstSCI	CCNGG	2 cut(s)	589, 611
BstV1I	GCAGC	1 cut(s)	833
BstV2I	GAAGAC	3 cut(s)	137, 170, 564
BstX2I	RGATCY	2 cut(s)	247, 595
BstYI	RGATCY	2 cut(s)	247, 595
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	5 cut(s)	69, 75, 266, 327, 611
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	107, 739
BtsI	GCAGTG	1 cut(s)	757
BtsIMutI	CAGTG	3 cut(s)	167, 490, 757
Cac8I	GCNNGC	4 cut(s)	67, 118, 493, 764
CfoI	GCGC	1 cut(s)	14
Cfr13I	GGNCC	4 cut(s)	30, 74, 86, 658
ClaI	ATCGAT	1 cut(s)	57
CseI	GACGC	1 cut(s)	852
Csp6I	GTAC	3 cut(s)	97, 109, 675
CviAII	CATG	5 cut(s)	49, 311, 349, 678, 714
CviQI	GTAC	3 cut(s)	97, 109, 675
DdeI	CTNAG	4 cut(s)	34, 366, 396, 606
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	3 cut(s)	7, 249, 597
DpnII	GATC	3 cut(s)	5, 247, 595
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	67, 264
Eam1104I	CTCTTC	2 cut(s)	171, 176
EarI	CTCTTC	2 cut(s)	171, 176
Eco130I	CCWWGG	1 cut(s)	251
Eco147I	AGGCCT	1 cut(s)	611
Eco32I	GATATC	2 cut(s)	241, 587
Eco47I	GGWCC	3 cut(s)	30, 86, 658
Eco57I	CTGAAG	2 cut(s)	296, 576
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	589, 611
EcoRV	GATATC	2 cut(s)	241, 587
EcoT14I	CCWWGG	1 cut(s)	251
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	5 cut(s)	52, 314, 352, 681, 717
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	5 cut(s)	48, 310, 348, 677, 713
FauI	CCCGC	1 cut(s)	522
Fnu4HI	GCNGC	3 cut(s)	15, 767, 847
FokI	GGATG	2 cut(s)	114, 746
Fsp4HI	GCNGC	3 cut(s)	15, 767, 847
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	3 cut(s)	15, 767, 847
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	5 cut(s)	69, 75, 266, 327, 611
HgaI	GACGC	1 cut(s)	852
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	5 cut(s)	52, 314, 352, 681, 717
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	8 cut(s)	133, 158, 218, 314, 426, 645, 719, 827
Hpy166II	GTNNAC	2 cut(s)	97, 869
Hpy188I	TCNGA	2 cut(s)	37, 421
Hpy188III	TCNNGA	1 cut(s)	582
Hpy8I	GTNNAC	2 cut(s)	97, 869
HpyAV	CCTTC	2 cut(s)	202, 451
HpyCH4III	ACNGT	3 cut(s)	113, 385, 417
HpyCH4V	TGCA	8 cut(s)	45, 155, 452, 503, 565, 619, 681, 849
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 458
HpyF3I	CTNAG	4 cut(s)	34, 366, 396, 606
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	5 cut(s)	52, 314, 352, 681, 717
HspAI	GCGC	1 cut(s)	12
KasI	GGCGCC	1 cut(s)	11
Kzo9I	GATC	3 cut(s)	5, 247, 595
Lsp1109I	GCAGC	1 cut(s)	833
LweI	GCATC	4 cut(s)	54, 63, 92, 382
MaeI	CTAG	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	508, 793, 880
MalI	GATC	3 cut(s)	7, 249, 597
MboI	GATC	3 cut(s)	5, 247, 595
MboII	GAAGA	8 cut(s)	142, 175, 188, 193, 289, 350, 569, 830
MfeI	CAATTG	1 cut(s)	770
MflI	RGATCY	2 cut(s)	247, 595
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	9 cut(s)	148, 191, 202, 770, 776, 784, 822, 851, 887
Mly113I	GGCGCC	1 cut(s)	12
MlyI	GAGTC	2 cut(s)	127, 308
MnlI	CCTC	7 cut(s)	43, 65, 151, 177, 181, 361, 538
MseI	TTAA	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	554, 669
MspR9I	CCNGG	2 cut(s)	591, 613
MunI	CAATTG	1 cut(s)	770
MvaI	CCWGG	2 cut(s)	591, 613
MwoI	GCNNNNNNNGC	2 cut(s)	51, 458
NarI	GGCGCC	1 cut(s)	12
NdeII	GATC	3 cut(s)	5, 247, 595
NlaIII	CATG	5 cut(s)	52, 314, 352, 681, 717
NlaIV	GGNNCC	1 cut(s)	13
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	3 cut(s)	508, 793, 880
NspI	RCATGY	1 cut(s)	681
NspV	TTCGAA	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	611
PfeI	GAWTC	6 cut(s)	158, 218, 426, 645, 719, 827
PflMI	CCANNNNNTGG	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	16, 768, 848
PleI	GAGTC	2 cut(s)	127, 308
PluTI	GGCGCC	1 cut(s)	15
PpsI	GAGTC	2 cut(s)	127, 308
Psp6I	CCWGG	2 cut(s)	589, 611
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	2 cut(s)	589, 611
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	4 cut(s)	30, 74, 86, 658
PsuI	RGATCY	2 cut(s)	247, 595
PvuII	CAGCTG	2 cut(s)	554, 669
RsaI	GTAC	3 cut(s)	98, 110, 676
RsaNI	GTAC	3 cut(s)	97, 109, 675
SaqAI	TTAA	1 cut(s)	779
SatI	GCNGC	3 cut(s)	15, 767, 847
Sau3AI	GATC	3 cut(s)	5, 247, 595
Sau96I	GGNCC	4 cut(s)	30, 74, 86, 658
SchI	GAGTC	2 cut(s)	127, 308
ScrFI	CCNGG	2 cut(s)	591, 613
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	8 cut(s)	35, 67, 88, 297, 372, 526, 556, 671
SfaNI	GCATC	4 cut(s)	54, 63, 92, 382
SfoI	GGCGCC	1 cut(s)	13
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	3 cut(s)	30, 86, 658
SmlI	CTYRAG	2 cut(s)	542, 872
SmoI	CTYRAG	2 cut(s)	542, 872
Sse9I	AATT	9 cut(s)	148, 191, 202, 770, 776, 784, 822, 851, 887
SseBI	AGGCCT	1 cut(s)	611
SsiI	CCGC	3 cut(s)	15, 529, 766
SspDI	GGCGCC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	611
StyD4I	CCNGG	2 cut(s)	589, 611
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	3 cut(s)	113, 385, 417
TaqI	TCGA	2 cut(s)	57, 161
TasI	AATT	9 cut(s)	148, 191, 202, 770, 776, 784, 822, 851, 887
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	2 cut(s)	17, 769
TfiI	GAWTC	6 cut(s)	158, 218, 426, 645, 719, 827
Tru1I	TTAA	1 cut(s)	779
Tru9I	TTAA	1 cut(s)	779
TscAI	CASTG	3 cut(s)	174, 490, 757
TseFI	GTSAC	3 cut(s)	508, 793, 880
TseI	GCWGC	1 cut(s)	846
Tsp45I	GTSAC	3 cut(s)	508, 793, 880
TspDTI	ATGAA	3 cut(s)	75, 315, 741
TspGWI	ACGGA	3 cut(s)	114, 650, 746
TspRI	CASTG	3 cut(s)	174, 490, 757
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	3 cut(s)	30, 86, 658
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	3 cut(s)	148, 202, 851
XceI	RCATGY	1 cut(s)	681
XspI	CTAG	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.