Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011443

Physical Location & Seq

Genomic Coordinates Reverse (-)

28037468 .. 28119676

Gene Structure 82209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0254400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1941 bp

ATGTTTCAAATGTTCATGCAATTCCATTTCGCACTTGTCGGTGCTTTCGCTGTGATGCTACTAGGTCATGCCCAGGATCAATCAGGCTTCATTAGCATAGATTGCGGCCTACAACAAAAATGGGGTTATACAGAAGGCCCAACAACCATTAGATACATTCCAGACACAAATTACATTGATACGGGTGAGAGCAAGACCATATCAAATGACCATGTTCGTCTACTTCCGCAACAGTTTCGCACCGTTAGGATCTTCCCTAAAGGAACCAGGAACTGTTACAAAATAAACGTTACTAGCGGGCAAAAGTATTTGATACGAGCAAGCTTTGGGTATGGAAATTATGATGGCGAAAACAATTTACCTGAATTCGAACTACGTCTTGGAGATAGTTTGTGGGATTCTGTGGTGTTCACTCGCGATCTTGTGAATTCTATCATAGTGAAGGAGCTCATACATATCCCTATGCGAAATTACATACATGTTTGTTTGGTTGACATAAATAAAGGGGTTCCATTTATATCAGTTATAGAACTCAGGCCTTTACGTGATGAAATTTATCTGTCAAAAGTTGGGCCTTTGGCAGTTATTCAGCGATGTGACACTGGTCGAATGGTAGTGAGTGGCATTGGTGGAATATTAGTGAGTGACATCATATACAGGTACCCAGACGATGTCATTGATCGTCTCTGGTATCCTTGTTACGAAGGTGGTTGGAAACAACTAAGTACTTCGTCCGTCATCGACAGGGATGCGGTTTACCAACTCCCATCTCGTGTCATGAGTACAGCTGCCACGCCAATCGATATTTCAAGCAAATATCTGAATTTTTCCTTTATGCCTGTCATCGAAGTTAAAGAGTACAGCGCCAGCTGGTCTAGAGAGCTCACTATAACCATGAATGGAAAACCTATTTCTAGTCCATTTGATCCACATTACTTGAGCACAACAACGAGAACCACCACATTTGTTGCGGAAGAAGGAAAATATGATTTTTCAATATCCACTCCGGGGACAACGTATCAACCGATCCTGAACGCCTTTGAGATTTATATGGCAAAAGAAATTCTAGTATCAGAAACAAACCAGCAAGATGTTGAAGCAATTACGAACCTCAAGTCAACTTATAAAATCATTAAGAATTGGCAAGGAGATCCGTGCAACCCTCAAGTTTACCTGTGGGAAGGTGTGAAGTGCAGCTATTCTGACAATGACTCCGCACGAATCATATCCCTGGATTTGTCACAGAGTGGACTAACCGGAGAGATAGCTGCTTCTATAGCTAATCTCACAATGATACAGACTTTGGATTTATCAAACAACAACTTATCCGGACAAATTCCAGAATATTTGTCGCAGTTGCCAAAGTTAAATGTCTTAAACTTGGAGAAAAATGAGCTCACAGGTTCAGTTCCTGCCGGGCTTATAGCAAAAGGAAAGGATGGTTTGTCATTGAGTTTGTGCGGAAATCCAAGTTTATCAAAGCAGGTTCCTTGCGAGAAGAAGAAGAAGTTTACTGTTCCGGTCGTTGTGTCAATTATTGTAATGTTGTTGGTCTCATCCATTGCAGCAGCTATATTGTGGAAATTAAAAACGGGTCATGCTGTTCGGAAGTACCGGAGAGTTGATAAGGGACATGATGTGTTTTTGAGTTTTAGAGGTGAGGATACACGTCAAGGCTTTGCACGTAATCTGTTCGAAGCTTTATCCTCTAAAGGAATCAAGACATTTTTTGATGATGAAACGCTCCAGGCGGGAGATGAAATAGCAGTTGCACTTCTCGATGCAATAGAAGCATCAAAGATTTCGGTCATTATAATCTCAAAAAACTATGCTTCGTCAAGTTGGTGTTTGGGGGAACTTGTTAAGATCCTTGATTGTAAAAAGTCAAGGCATCAACGTGTTATCCCAGTTTTTTACAATGTGGATCCATCACACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004523 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006273 GO:0006281 GO:0006298 GO:0006401 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0022616 GO:0032299 GO:0032991 GO:0033554 GO:0033567 GO:0034641 GO:0034645 GO:0034655 GO:0043137 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_HII

Protein Analysis

646

Amino Acids

72.29

Weight (kDa)

6.8

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	33 - 351	1.3e-81	Malectin-like domain
TIR	PF01582	545 - 646	1.3e-36	TIR domain
TIR_2	PF13676	547 - 640	9.2e-18	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25100 AT2G25100
fragaria_vesca	FvH4_3g27560 FvH4_3g27560
malus_domestica	MD02G1261600.v1.1
prunus_persica	Prupe.2G069600_v2.0.a1 Prupe.2G069600_v2.0.a1
pyrus_communis	pycom02g22370
rosa_chinensis	RchiOBHm_Chr5g0049931
rosa_laevigata	RLG00000034666
rosa_roxburghii	Rroxscaffold_1G00031380
rosa_rugosa	Rorug05G0254300 Rorug05G0254400 Rorug05G0254500 Rorug05G0254600
rosa_samantha	Rh5AG328700 Rh5BG339300 Rh5CG365100 Rh5DG351700
rosa_wichuraiana	Rw5G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1125, 1814
Acc36I	ACCTGC	1 cut(s)	1474
Acc65I	GGTACC	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	220
AccII	CGCG	1 cut(s)	417
AccIII	TCCGGA	1 cut(s)	1328
AciI	CCGC	8 cut(s)	105, 227, 297, 752, 971, 1215, 1461, 1751
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	8 cut(s)	84, 257, 920, 1021, 1145, 1861, 1919, 1932
AcsI	RAATTY	6 cut(s)	365, 427, 552, 823, 1062, 1335
AdeI	CACNNNGTG	1 cut(s)	1247
AfaI	GTAC	5 cut(s)	662, 727, 784, 860, 1613
AfiI	CCNNNNNNNGG	1 cut(s)	1008
AflIII	ACRYGT	4 cut(s)	478, 1667, 1897, 1933
AgsI	TTSAA	4 cut(s)	8, 810, 996, 1097
AjiI	CACGTC	1 cut(s)	1670
AjnI	CCWGG	4 cut(s)	72, 266, 1230, 1746
AjuI	GAANNNNNNNTTGG	4 cut(s)	363, 395, 790, 822
Alw21I	GWGCWC	4 cut(s)	450, 885, 944, 1398
Alw26I	GTCTC	2 cut(s)	689, 1558
AlwI	GGATC	8 cut(s)	84, 257, 920, 1021, 1145, 1861, 1919, 1932
AlwNI	CAGNNNCTG	2 cut(s)	273, 1412
Aor13HI	TCCGGA	1 cut(s)	1328
AoxI	GGCC	4 cut(s)	106, 136, 536, 572
ApeKI	GCWGC	5 cut(s)	788, 1194, 1268, 1565, 1568
ApoI	RAATTY	6 cut(s)	365, 427, 552, 823, 1062, 1335
ArsI	GACNNNNNNTTYG	2 cut(s)	1100, 1132
Asp718I	GGTACC	1 cut(s)	660
AspLEI	GCGC	1 cut(s)	866
AspS9I	GGNCC	2 cut(s)	137, 572
AsuC2I	CCSGG	2 cut(s)	1008, 1417
AsuHPI	GGTGA	2 cut(s)	197, 1670
AsuII	TTCGAA	2 cut(s)	369, 1695
BamHI	GGATCC	1 cut(s)	1924
BanI	GGYRCC	1 cut(s)	660
BanII	GRGCYC	3 cut(s)	450, 885, 1398
BauI	CACGAG	1 cut(s)	771
Bbv12I	GWGCWC	4 cut(s)	450, 885, 944, 1398
BbvI	GCAGC	5 cut(s)	775, 1206, 1255, 1577, 1580
BccI	CCATC	4 cut(s)	338, 775, 1433, 1936
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 731, 765
BciT130I	CCWGG	4 cut(s)	74, 268, 1232, 1748
BciVI	GTATCC	2 cut(s)	702, 1657
BcnI	CCSGG	2 cut(s)	1008, 1417
BcoDI	GTCTC	2 cut(s)	689, 1558
BfaI	CTAG	5 cut(s)	62, 294, 876, 915, 1067
BfmI	CTRYAG	1 cut(s)	1275
BfoI	RGCGCY	1 cut(s)	867
BfuAI	ACCTGC	1 cut(s)	1474
BfuI	GTATCC	2 cut(s)	702, 1657
BisI	GCNGC	6 cut(s)	106, 789, 1195, 1269, 1566, 1569
BlsI	GCNGC	6 cut(s)	107, 790, 1196, 1270, 1567, 1570
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	6 cut(s)	74, 268, 1008, 1232, 1417, 1748
BmgBI	CACGTC	1 cut(s)	1670
BmgT120I	GGNCC	2 cut(s)	137, 572
BmiI	GGNNCC	5 cut(s)	265, 510, 662, 1488, 1926
BmrFI	CCNGG	6 cut(s)	74, 268, 1008, 1232, 1417, 1748
BmrI	ACTGGG	1 cut(s)	1901
BmsI	GCATC	5 cut(s)	45, 739, 1771, 1802, 1900
BmuI	ACTGGG	1 cut(s)	1901
BoxI	GACNNNNGTC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	1730
Bpu14I	TTCGAA	2 cut(s)	369, 1695
BpuEI	CTTGAG	3 cut(s)	958, 1097, 1149
BpuMI	CCSGG	2 cut(s)	1008, 1417
Bsa29I	ATCGAT	1 cut(s)	801
BsaAI	YACGTR	3 cut(s)	545, 1685, 1936
BsaI	GGTCTC	1 cut(s)	1558
BsaJI	CCNNGG	3 cut(s)	72, 1007, 1230
BsaWI	WCCGGW	4 cut(s)	1256, 1328, 1519, 1614
BsaXI	ACNNNNNCTCC	2 cut(s)	1196, 1226
Bsc4I	CCNNNNNNNGG	1 cut(s)	1008
Bse1I	ACTGG	2 cut(s)	607, 1907
Bse3DI	GCAATG	1 cut(s)	1560
BseAI	TCCGGA	1 cut(s)	1328
BseBI	CCWGG	4 cut(s)	74, 268, 1232, 1748
BseCI	ATCGAT	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	72, 1007, 1230
BseGI	GGATG	3 cut(s)	754, 1444, 1556
BseLI	CCNNNNNNNGG	1 cut(s)	1008
BseMI	GCAATG	1 cut(s)	1560
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	2 cut(s)	607, 1907
BseXI	GCAGC	5 cut(s)	775, 1206, 1255, 1577, 1580
BsgI	GTGCAG	1 cut(s)	1213
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	1524
BshFI	GGCC	4 cut(s)	108, 138, 538, 574
BshNI	GGYRCC	1 cut(s)	660
BshVI	ATCGAT	1 cut(s)	801
BsiEI	CGRYCG	1 cut(s)	1524
BsiHKAI	GWGCWC	4 cut(s)	450, 885, 944, 1398
BsiSI	CCGG	6 cut(s)	1007, 1257, 1329, 1416, 1520, 1615
BslFI	GGGAC	2 cut(s)	1024, 1644
BslI	CCNNNNNNNGG	1 cut(s)	1008
BsmAI	GTCTC	2 cut(s)	689, 1558
BsmBI	CGTCTC	1 cut(s)	689
BsmFI	GGGAC	2 cut(s)	1024, 1644
BsnI	GGCC	4 cut(s)	108, 138, 538, 574
Bso31I	GGTCTC	1 cut(s)	1558
Bsp119I	TTCGAA	2 cut(s)	369, 1695
Bsp1286I	GDGCHC	4 cut(s)	450, 885, 944, 1398
Bsp13I	TCCGGA	1 cut(s)	1328
Bsp143I	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
Bsp68I	TCGCGA	1 cut(s)	417
BspACI	CCGC	8 cut(s)	105, 227, 297, 752, 971, 1215, 1461, 1751
BspANI	GGCC	4 cut(s)	108, 138, 538, 574
BspCNI	CTCAG	1 cut(s)	546
BspDI	ATCGAT	1 cut(s)	801
BspEI	TCCGGA	1 cut(s)	1328
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	5 cut(s)	265, 510, 662, 1488, 1926
BspMI	ACCTGC	1 cut(s)	1474
BspPI	GGATC	8 cut(s)	84, 257, 920, 1021, 1145, 1861, 1919, 1932
BspT104I	TTCGAA	2 cut(s)	369, 1695
BspT107I	GGYRCC	1 cut(s)	660
BspTNI	GGTCTC	1 cut(s)	1558
BsrDI	GCAATG	1 cut(s)	1560
BsrI	ACTGG	2 cut(s)	607, 1907
BssECI	CCNNGG	3 cut(s)	72, 1007, 1230
BssMI	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
BssSI	CACGAG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	771
Bst2UI	CCWGG	4 cut(s)	74, 268, 1232, 1748
Bst4CI	ACNGT	4 cut(s)	234, 244, 275, 1516
BstAPI	GCANNNNNTGC	1 cut(s)	102
BstBAI	YACGTR	3 cut(s)	545, 1685, 1936
BstBI	TTCGAA	2 cut(s)	369, 1695
BstC8I	GCNNGC	3 cut(s)	299, 322, 868
BstDEI	CTNAG	2 cut(s)	533, 722
BstF5I	GGATG	3 cut(s)	754, 1444, 1556
BstFNI	CGCG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	867
BstHHI	GCGC	1 cut(s)	866
BstKTI	GATC	9 cut(s)	79, 252, 421, 682, 928, 1029, 1153, 1869, 1927
BstMAI	GTCTC	2 cut(s)	689, 1558
BstMBI	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
BstMCI	CGRYCG	1 cut(s)	1524
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 102, 1277, 1790
BstNI	CCWGG	4 cut(s)	74, 268, 1232, 1748
BstNSI	RCATGY	1 cut(s)	482
BstPAI	GACNNNNGTC	1 cut(s)	603
BstSCI	CCNGG	6 cut(s)	72, 266, 1006, 1230, 1415, 1746
BstSFI	CTRYAG	1 cut(s)	1275
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	5 cut(s)	775, 1206, 1255, 1577, 1580
BstX2I	RGATCY	4 cut(s)	249, 1150, 1866, 1924
BstYI	RGATCY	4 cut(s)	249, 1150, 1866, 1924
Bsu15I	ATCGAT	1 cut(s)	801
BsuI	GTATCC	2 cut(s)	702, 1657
BsuRI	GGCC	4 cut(s)	108, 138, 538, 574
BsuTUI	ATCGAT	1 cut(s)	801
BtgZI	GCGATG	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	1670
BtsCI	GGATG	3 cut(s)	754, 1444, 1556
BtsIMutI	CAGTG	1 cut(s)	600
BtuMI	TCGCGA	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	1474
Cac8I	GCNNGC	3 cut(s)	299, 322, 868
CaiI	CAGNNNCTG	2 cut(s)	273, 1412
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	1 cut(s)	866
Cfr13I	GGNCC	2 cut(s)	137, 572
ClaI	ATCGAT	1 cut(s)	801
Csp6I	GTAC	5 cut(s)	661, 726, 783, 859, 1612
CspCI	CAANNNNNGTGG	6 cut(s)	918, 946, 949, 953, 981, 984
CviAII	CATG	8 cut(s)	16, 68, 212, 479, 778, 895, 1598, 1634
CviQI	GTAC	5 cut(s)	661, 726, 783, 859, 1612
DdeI	CTNAG	2 cut(s)	533, 722
DpnI	GATC	9 cut(s)	78, 251, 420, 681, 927, 1028, 1152, 1868, 1926
DpnII	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
DraIII	CACNNNGTG	1 cut(s)	1247
Ecl136II	GAGCTC	3 cut(s)	448, 883, 1396
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	3 cut(s)	450, 885, 1398
Eco31I	GGTCTC	1 cut(s)	1558
Eco53kI	GAGCTC	3 cut(s)	448, 883, 1396
EcoICRI	GAGCTC	3 cut(s)	448, 883, 1396
EcoRI	GAATTC	2 cut(s)	365, 427
EcoRII	CCWGG	4 cut(s)	72, 266, 1230, 1746
EcoT38I	GRGCYC	3 cut(s)	450, 885, 1398
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	8 cut(s)	19, 71, 215, 482, 781, 898, 1601, 1637
FaqI	GGGAC	2 cut(s)	1024, 1644
FatI	CATG	8 cut(s)	15, 67, 211, 478, 777, 894, 1597, 1633
FauI	CCCGC	2 cut(s)	290, 1744
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	6 cut(s)	106, 789, 1195, 1269, 1566, 1569
FokI	GGATG	3 cut(s)	761, 1451, 1543
FriOI	GRGCYC	3 cut(s)	450, 885, 1398
Fsp4HI	GCNGC	6 cut(s)	106, 789, 1195, 1269, 1566, 1569
FspBI	CTAG	5 cut(s)	62, 294, 876, 915, 1067
GlaI	GCGC	1 cut(s)	865
GluI	GCNGC	6 cut(s)	106, 789, 1195, 1269, 1566, 1569
GsuI	CTGGAG	1 cut(s)	1730
HaeII	RGCGCY	1 cut(s)	867
HaeIII	GGCC	4 cut(s)	108, 138, 538, 574
HapII	CCGG	6 cut(s)	1007, 1257, 1329, 1416, 1520, 1615
HhaI	GCGC	1 cut(s)	866
Hin1II	CATG	8 cut(s)	19, 71, 215, 482, 781, 898, 1601, 1637
Hin6I	GCGC	1 cut(s)	864
HinP1I	GCGC	1 cut(s)	864
HincII	GTYRAC	2 cut(s)	493, 1119
HindII	GTYRAC	2 cut(s)	493, 1119
HindIII	AAGCTT	2 cut(s)	322, 1698
HinfI	GANTC	4 cut(s)	398, 1211, 1221, 1716
HpaII	CCGG	6 cut(s)	1007, 1257, 1329, 1416, 1520, 1615
HphI	GGTGA	2 cut(s)	197, 1670
Hpy166II	GTNNAC	8 cut(s)	221, 411, 493, 757, 1119, 1171, 1250, 1512
Hpy188I	TCNGA	4 cut(s)	822, 1075, 1204, 1608
Hpy188III	TCNNGA	9 cut(s)	161, 416, 778, 876, 1030, 1329, 1340, 1720, 1778
Hpy8I	GTNNAC	8 cut(s)	221, 411, 493, 757, 1119, 1171, 1250, 1512
HpyAV	CCTTC	5 cut(s)	128, 436, 698, 971, 1175
HpyCH4III	ACNGT	4 cut(s)	234, 244, 275, 1516
HpyCH4IV	ACGT	8 cut(s)	288, 376, 544, 1016, 1669, 1684, 1897, 1935
HpyCH4V	TGCA	7 cut(s)	19, 1158, 1194, 1565, 1682, 1772, 1784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 102, 1277, 1790
HpyF3I	CTNAG	2 cut(s)	533, 722
HpySE526I	ACGT	8 cut(s)	288, 376, 544, 1016, 1669, 1684, 1897, 1935
Hsp92II	CATG	8 cut(s)	19, 71, 215, 482, 781, 898, 1601, 1637
HspAI	GCGC	1 cut(s)	864
Kpn2I	TCCGGA	1 cut(s)	1328
KpnI	GGTACC	1 cut(s)	664
Kzo9I	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
LmnI	GCTCC	2 cut(s)	445, 1749
Lsp1109I	GCAGC	5 cut(s)	775, 1206, 1255, 1577, 1580
LweI	GCATC	5 cut(s)	45, 739, 1771, 1802, 1900
MaeI	CTAG	5 cut(s)	62, 294, 876, 915, 1067
MaeII	ACGT	8 cut(s)	288, 376, 544, 1016, 1669, 1684, 1897, 1935
MaeIII	GTNAC	6 cut(s)	275, 289, 596, 644, 698, 1239
MalI	GATC	9 cut(s)	78, 251, 420, 681, 927, 1028, 1152, 1868, 1926
MboI	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
MboII	GAAGA	5 cut(s)	244, 986, 1510, 1513, 1516
MflI	RGATCY	4 cut(s)	249, 1150, 1866, 1924
MhlI	GDGCHC	4 cut(s)	450, 885, 944, 1398
MlyI	GAGTC	1 cut(s)	1205
MmeI	TCCRAC	1 cut(s)	692
MnlI	CCTC	5 cut(s)	1121, 1173, 1649, 1654, 1717
MroI	TCCGGA	1 cut(s)	1328
MseI	TTAA	6 cut(s)	852, 1134, 1367, 1376, 1586, 1863
MslI	CAYNNNNRTG	2 cut(s)	1896, 1936
MspA1I	CMGCKG	2 cut(s)	788, 870
MspI	CCGG	6 cut(s)	1007, 1257, 1329, 1416, 1520, 1615
MspR9I	CCNGG	6 cut(s)	74, 268, 1008, 1232, 1417, 1748
MvaI	CCWGG	4 cut(s)	74, 268, 1232, 1748
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	93, 102, 1277, 1790
NciI	CCSGG	2 cut(s)	1008, 1417
NdeII	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
NlaIII	CATG	8 cut(s)	19, 71, 215, 482, 781, 898, 1601, 1637
NlaIV	GGNNCC	5 cut(s)	265, 510, 662, 1488, 1926
NmuCI	GTSAC	3 cut(s)	596, 644, 1239
NruI	TCGCGA	1 cut(s)	417
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	2 cut(s)	369, 1695
PagI	TCATGA	1 cut(s)	777
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	1022
PfeI	GAWTC	3 cut(s)	398, 1221, 1716
PflFI	GACNNNGTC	1 cut(s)	671
PkrI	GCNGC	6 cut(s)	107, 790, 1196, 1270, 1567, 1570
PleI	GAGTC	1 cut(s)	1205
PpsI	GAGTC	1 cut(s)	1205
Ppu21I	YACGTR	3 cut(s)	545, 1685, 1936
PscI	ACATGT	1 cut(s)	478
PshAI	GACNNNNGTC	1 cut(s)	603
PsiI	TTATAA	2 cut(s)	1125, 1814
Psp124BI	GAGCTC	3 cut(s)	450, 885, 1398
Psp1406I	AACGTT	1 cut(s)	288
Psp6I	CCWGG	4 cut(s)	72, 266, 1230, 1746
PspGI	CCWGG	4 cut(s)	72, 266, 1230, 1746
PspN4I	GGNNCC	5 cut(s)	265, 510, 662, 1488, 1926
PspPI	GGNCC	2 cut(s)	137, 572
PstNI	CAGNNNCTG	2 cut(s)	273, 1412
PsuI	RGATCY	4 cut(s)	249, 1150, 1866, 1924
PsyI	GACNNNGTC	1 cut(s)	671
PvuII	CAGCTG	2 cut(s)	788, 870
RruI	TCGCGA	1 cut(s)	417
RsaI	GTAC	5 cut(s)	662, 727, 784, 860, 1613
RsaNI	GTAC	5 cut(s)	661, 726, 783, 859, 1612
RseI	CAYNNNNRTG	2 cut(s)	1896, 1936
SacI	GAGCTC	3 cut(s)	450, 885, 1398
SaqAI	TTAA	6 cut(s)	852, 1134, 1367, 1376, 1586, 1863
SatI	GCNGC	6 cut(s)	106, 789, 1195, 1269, 1566, 1569
Sau3AI	GATC	9 cut(s)	76, 249, 418, 679, 925, 1026, 1150, 1866, 1924
Sau96I	GGNCC	2 cut(s)	137, 572
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	1 cut(s)	1205
ScrFI	CCNGG	6 cut(s)	74, 268, 1008, 1232, 1417, 1748
SduI	GDGCHC	4 cut(s)	450, 885, 944, 1398
SfaNI	GCATC	5 cut(s)	45, 739, 1771, 1802, 1900
SfcI	CTRYAG	1 cut(s)	1275
SfuI	TTCGAA	2 cut(s)	369, 1695
SmiMI	CAYNNNNRTG	2 cut(s)	1896, 1936
SmlI	CTYRAG	3 cut(s)	937, 1112, 1164
SmoI	CTYRAG	3 cut(s)	937, 1112, 1164
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	8 cut(s)	105, 227, 297, 752, 971, 1215, 1461, 1751
SspI	AATATT	2 cut(s)	636, 1346
SspMI	CTAG	5 cut(s)	62, 294, 876, 915, 1067
SstI	GAGCTC	3 cut(s)	450, 885, 1398
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	6 cut(s)	72, 266, 1006, 1230, 1415, 1746
TaaI	ACNGT	4 cut(s)	234, 244, 275, 1516
TaiI	ACGT	8 cut(s)	291, 379, 547, 1019, 1672, 1687, 1900, 1938
TaqI	TCGA	7 cut(s)	369, 607, 741, 801, 846, 1695, 1779
TaqII	GACCGA	1 cut(s)	1795
TatI	WGTACW	3 cut(s)	725, 782, 858
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	398, 1221, 1716
Tru1I	TTAA	6 cut(s)	852, 1134, 1367, 1376, 1586, 1863
Tru9I	TTAA	6 cut(s)	852, 1134, 1367, 1376, 1586, 1863
TscAI	CASTG	1 cut(s)	607
TseFI	GTSAC	3 cut(s)	596, 644, 1239
TseI	GCWGC	5 cut(s)	788, 1194, 1268, 1565, 1568
Tsp45I	GTSAC	3 cut(s)	596, 644, 1239
TspDTI	ATGAA	6 cut(s)	4, 79, 564, 911, 1752, 1773
TspGWI	ACGGA	2 cut(s)	724, 1143
TspRI	CASTG	1 cut(s)	607
Tth111I	GACNNNGTC	1 cut(s)	671
XapI	RAATTY	6 cut(s)	365, 427, 552, 823, 1062, 1335
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	5 cut(s)	62, 294, 876, 915, 1067
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.