Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011443

Physical Location & Seq

Genomic Coordinates Reverse (-)

28249069 .. 28249371

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0254600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCGGGGTTTCCATGAAGCGCTAGGTTATGGTGATCTACTCAATTTGGGTTATCAAGGAGTGATGTCTACCTGGTGGAACTCGAGCACAAGACTGAGGCTGGATAGGGCGGTTTGCACTCCACGTTGGTTTGACATTTTCGGGTATGCTAGGGTTCGCCATCTACCTCCTAGTGACTCTGAATATGTCCCCATTCTTCTACAGGCTAGCTCTACTCCACTTTCTCAGCGTCTAAGACACAGACGCTTCAAATTTGAAGCATTCTGGTTCCAGCATGGTGACTGTGATGGGGTGGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004523 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006271 GO:0006273 GO:0006281 GO:0006298 GO:0006401 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0022616 GO:0032299 GO:0032991 GO:0033554 GO:0033567 GO:0034641 GO:0034645 GO:0034655 GO:0043137 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

RNase_HII

Protein Analysis

100

Amino Acids

11.76

Weight (kDa)

9.18

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25100 AT2G25100
fragaria_vesca	FvH4_3g27560 FvH4_3g27560
malus_domestica	MD02G1261600.v1.1
prunus_persica	Prupe.2G069600_v2.0.a1 Prupe.2G069600_v2.0.a1
pyrus_communis	pycom02g22370
rosa_chinensis	RchiOBHm_Chr5g0049931
rosa_laevigata	RLG00000034666
rosa_roxburghii	Rroxscaffold_1G00031380
rosa_rugosa	Rorug05G0254300 Rorug05G0254400 Rorug05G0254500 Rorug05G0254600
rosa_samantha	Rh5AG328700 Rh5BG339300 Rh5CG365100 Rh5DG351700
rosa_wichuraiana	Rw5G031050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	68, 297
AciI	CCGC	2 cut(s)	4, 110
AcsI	RAATTY	1 cut(s)	251
AfeI	AGCGCT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	250, 257
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw21I	GWGCWC	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	82
Aor51HI	AGCGCT	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	44, 290
AsuNHI	GCTAGC	1 cut(s)	206
AvaI	CYCGRG	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	89
BccI	CCATC	2 cut(s)	168, 281
BciT130I	CCWGG	1 cut(s)	73
BfaI	CTAG	4 cut(s)	23, 150, 171, 207
BfmI	CTRYAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	86, 239
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	4, 110
BspCNI	CTCAG	2 cut(s)	87, 238
BspLI	GGNNCC	1 cut(s)	269
BspOI	GCTAGC	1 cut(s)	210
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	95, 225, 233
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	22
CseI	GACGC	2 cut(s)	218, 252
CsiI	ACCWGGT	1 cut(s)	71
CviAII	CATG	2 cut(s)	14, 275
CviJI	RGCY	3 cut(s)	100, 206, 210
CviKI_1	RGCY	3 cut(s)	100, 206, 210
DdeI	CTNAG	3 cut(s)	95, 225, 233
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco47III	AGCGCT	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	17, 278
FaiI	YATR	5 cut(s)	15, 30, 147, 186, 276
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	13, 274
FblI	GTMKAC	2 cut(s)	68, 297
FspBI	CTAG	4 cut(s)	23, 150, 171, 207
GlaI	GCGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	23
HgaI	GACGC	2 cut(s)	218, 252
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	17, 278
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	1 cut(s)	176
HphI	GGTGA	2 cut(s)	44, 290
Hpy166II	GTNNAC	2 cut(s)	69, 298
Hpy188I	TCNGA	1 cut(s)	181
Hpy8I	GTNNAC	2 cut(s)	69, 298
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	117
HpyF3I	CTNAG	3 cut(s)	95, 225, 233
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	2 cut(s)	17, 278
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	58, 85, 86, 188, 250, 284
MabI	ACCWGGT	1 cut(s)	71
MaeI	CTAG	4 cut(s)	23, 150, 171, 207
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	173, 278
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	2 cut(s)	43, 251
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	90, 177
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	34
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	2 cut(s)	17, 278
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	173, 278
PaeR7I	CTCGAG	1 cut(s)	82
PctI	GAATGC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	269
PspXI	VCTCGAGB	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	5 cut(s)	28, 74, 127, 169, 212
SexAI	ACCWGGT	1 cut(s)	71
SfcI	CTRYAG	1 cut(s)	200
Sfr274I	CTCGAG	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	2 cut(s)	43, 251
SsiI	CCGC	2 cut(s)	4, 110
SspMI	CTAG	4 cut(s)	23, 150, 171, 207
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	83
TasI	AATT	2 cut(s)	43, 251
TseFI	GTSAC	2 cut(s)	173, 278
Tsp45I	GTSAC	2 cut(s)	173, 278
TspDTI	ATGAA	1 cut(s)	30
XapI	RAATTY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	82
XmiI	GTMKAC	2 cut(s)	68, 297
XspI	CTAG	4 cut(s)	23, 150, 171, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.