Prupe.2G113400_v2.0.a1

RING-H2 zinc finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019143
Physical Location & Seq
Forward (+)
17166049 .. 17166711
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G113400.1

Sequence Viewer

Length: 426 bp
ATGGGAATGATGGGCAAAATAGCAAGCTCCATAACCATCACAACAGGCAGCTGGAAAAATACCATTGTCACCGCAACAATCGTCTTTGCTGTCCGTCTTTATGCAAAGGTTTTCAGGCACAGTACAAAGCTCAATATTTACCATCCAAATCCTCGCAACAAGGAGATGTCCAGTGCTGCTTTATTTGTCCCATACTGTGTGGTGTGCCTCCAAGAAGTGATGAAGGGCCAAAGGTGCCGAAAGCTGCCCATATGCAACCATTGCTTCCATGTTCATTGCATTGATACATGGTTCCAATCGCATTCTACCTGCCCTTTATGCAGAACTAATCAGGCATCGTTTGTTCATACGCACCAACTTCGTCTCCTCCGGATCCATCTTTTGTTCTCTTTCATTTTTAGAATTTTTTCTAGGGAAAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

142

Amino Acids

16.33

Weight (kDa)

9.95

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44578 AT2G44581 AT3G60966
malus_domestica MD01G1155300.v1.1 MD07G1086600.v1.1
prunus_persica Prupe.2G113400_v2.0.a1 Prupe.2G252900_v2.0.a1
pyrus_communis pycom01g17260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 367, 380
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 1 cut(s) 124
AluBI AGCT 4 cut(s) 27, 51, 130, 244
AluI AGCT 4 cut(s) 27, 51, 130, 244
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 2 cut(s) 367, 380
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 3 cut(s) 48, 176, 244
ApoI RAATTY 1 cut(s) 402
Asp700I GAANNNNTTC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 61
BamHI GGATCC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 60, 163, 231
BccI CCATC 4 cut(s) 4, 44, 150, 384
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 3 cut(s) 49, 177, 245
BlsI GCNGC 3 cut(s) 50, 178, 246
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 236, 293, 374
BmsI GCATC 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 2 cut(s) 259, 274
BseAI TCCGGA 1 cut(s) 369
BseGI GGATG 1 cut(s) 142
BseMI GCAATG 2 cut(s) 259, 274
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 3 cut(s) 60, 163, 231
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 368
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 1 cut(s) 372
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 369
BspLI GGNNCC 3 cut(s) 236, 293, 374
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 2 cut(s) 367, 380
BspT107I GGYRCC 1 cut(s) 234
BsrDI GCAATG 2 cut(s) 259, 274
BsrI ACTGG 1 cut(s) 171
BssMI GATC 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 122, 197
BstAPI GCANNNNNTGC 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 1 cut(s) 372
BstMWI GCNNNNNNNGC 3 cut(s) 234, 261, 318
BstV1I GCAGC 3 cut(s) 60, 163, 231
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 1 cut(s) 228
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 123
CviAII CATG 2 cut(s) 269, 288
CviJI RGCY 5 cut(s) 27, 51, 130, 228, 244
CviKI_1 RGCY 5 cut(s) 27, 51, 130, 228, 244
CviQI GTAC 1 cut(s) 123
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 2 cut(s) 272, 291
FaiI YATR 9 cut(s) 32, 102, 193, 251, 253, 270, 289, 319, 348
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 268, 287
FauNDI CATATG 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 49, 177, 245
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 49, 177, 245
FspBI CTAG 1 cut(s) 411
GluI GCNGC 3 cut(s) 49, 177, 245
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 370
Hin1II CATG 2 cut(s) 272, 291
HpaII CCGG 1 cut(s) 370
HphI GGTGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 122, 197
HpyCH4V TGCA 4 cut(s) 104, 255, 279, 321
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 261, 318
Hsp92II CATG 2 cut(s) 272, 291
Kpn2I TCCGGA 1 cut(s) 369
Kzo9I GATC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 7 cut(s) 30, 37, 100, 184, 317, 322, 383
Lsp1109I GCAGC 3 cut(s) 60, 163, 231
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MflI RGATCY 1 cut(s) 372
MluCI AATT 1 cut(s) 402
MnlI CCTC 3 cut(s) 162, 218, 377
MroI TCCGGA 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 1 cut(s) 370
Mva1269I GAATGC 1 cut(s) 301
MwoI GCNNNNNNNGC 3 cut(s) 234, 261, 318
NdeI CATATG 1 cut(s) 251
NdeII GATC 1 cut(s) 372
NlaIII CATG 2 cut(s) 272, 291
NlaIV GGNNCC 3 cut(s) 236, 293, 374
NmuCI GTSAC 1 cut(s) 67
PctI GAATGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 406
PkrI GCNGC 3 cut(s) 50, 178, 246
PspN4I GGNNCC 3 cut(s) 236, 293, 374
PspPI GGNCC 1 cut(s) 226
PsuI RGATCY 1 cut(s) 372
PvuII CAGCTG 1 cut(s) 51
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 3 cut(s) 49, 177, 245
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 1 cut(s) 226
SetI ASST 7 cut(s) 29, 53, 111, 132, 236, 246, 311
SfaNI GCATC 1 cut(s) 344
Sse9I AATT 1 cut(s) 402
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 122, 197
TasI AATT 1 cut(s) 402
TatI WGTACW 1 cut(s) 122
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 48, 176, 244
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 236, 263, 335, 382
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.