Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0019143

Physical Location & Seq

Genomic Coordinates Reverse (-)

26651280 .. 26652307

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTTCCTCCTCCCAACAATCTCAGCCCTTCGACGGCCACTTCACGGTGCTGGACGACACCCAGTTTCATATCCGAGGCCGCACGCTCTTCTTCGTCGTCGTCCTCTTCACCGTCGTCCTCCTCGTCACCGTCCTCTTGCTCTACGCGCGCTGGGTATGCCACTCCCACCCCAACACCTCCTCCTCATCCAACACGCCGCCCAACGCGCCGCCGCAGAGTCAGCCCAAGGGACTCGACCCCACCGTCATCCGAGCCCTGCCAATCGTCCTGTACCACCAATCGGTTCGGGACTTGGAGGCTGGCGGCGGCGGCGGAGAGTGTTGCATATGCCTCGGGGTTTTCGGAGATGGCGAGAAGGTTAAGGTTCTGCCGAATTGCAGCCATAGCTACCACTCTGAGTGCGTTGATACGTGGCTCGCGACTCGGTCGAGCTGCCCGCTGTGTCGAGCTCAGCTCCAAGCTCAGTCCACCACTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

161

Amino Acids

17.39

Weight (kDa)

6.63

Isoelectric Point (pI)

64.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44578 AT2G44581 AT3G60966
malus_domestica	MD01G1155300.v1.1 MD07G1086600.v1.1
prunus_persica	Prupe.2G113400_v2.0.a1 Prupe.2G252900_v2.0.a1
pyrus_communis	pycom01g17260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AccII	CGCG	4 cut(s)	149, 151, 209, 422
AciI	CCGC	9 cut(s)	82, 200, 212, 215, 306, 309, 312, 315, 440
AcoI	YGGCCR	1 cut(s)	37
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	3 cut(s)	35, 46, 283
AluBI	AGCT	5 cut(s)	390, 435, 452, 457, 464
AluI	AGCT	5 cut(s)	390, 435, 452, 457, 464
Alw21I	GWGCWC	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	37, 79
ApeKI	GCWGC	2 cut(s)	381, 435
AspLEI	GCGC	3 cut(s)	151, 153, 211
AsuHPI	GGTGA	2 cut(s)	103, 121
AvaI	CYCGRG	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	259, 454
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	2 cut(s)	393, 422
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BisI	GCNGC	9 cut(s)	82, 200, 212, 215, 307, 310, 313, 382, 436
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	9 cut(s)	83, 201, 213, 216, 308, 311, 314, 383, 437
BmeT110I	CYCGRG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
Bpu1102I	GCTNAGC	1 cut(s)	453
BsaAI	YACGTR	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	76, 228, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 46, 283
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	76, 228, 334
BseGI	GGATG	2 cut(s)	188, 249
BseLI	CCNNNNNNNGG	3 cut(s)	35, 46, 283
BseMII	CTCAG	4 cut(s)	38, 390, 467, 479
BseNI	ACTGG	1 cut(s)	64
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	3 cut(s)	113, 172, 175
BseXI	GCAGC	2 cut(s)	393, 422
BseYI	CCCAGC	1 cut(s)	153
Bsh1236I	CGCG	4 cut(s)	149, 151, 209, 422
Bsh1285I	CGRYCG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	39, 81
BsiEI	CGRYCG	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	246, 305
BslI	CCNNNNNNNGG	3 cut(s)	35, 46, 283
BsmFI	GGGAC	2 cut(s)	246, 305
BsnI	GGCC	2 cut(s)	39, 81
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	259, 454
Bsp1720I	GCTNAGC	1 cut(s)	453
Bsp68I	TCGCGA	1 cut(s)	422
BspACI	CCGC	9 cut(s)	82, 200, 212, 215, 306, 309, 312, 315, 440
BspANI	GGCC	2 cut(s)	39, 81
BspCNI	CTCAG	4 cut(s)	37, 391, 466, 478
BspFNI	CGCG	4 cut(s)	149, 151, 209, 422
BspQI	GCTCTTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	76, 228, 334
BssHII	GCGCGC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	4 cut(s)	49, 115, 133, 247
Bst6I	CTCTTC	2 cut(s)	95, 113
BstBAI	YACGTR	1 cut(s)	414
BstC8I	GCNNGC	5 cut(s)	86, 151, 304, 420, 440
BstDEI	CTNAG	4 cut(s)	24, 399, 453, 465
BstF5I	GGATG	2 cut(s)	188, 249
BstFNI	CGCG	4 cut(s)	149, 151, 209, 422
BstHHI	GCGC	3 cut(s)	151, 153, 211
BstMCI	CGRYCG	1 cut(s)	431
BstMWI	GCNNNNNNNGC	6 cut(s)	148, 159, 208, 223, 312, 387
BstUI	CGCG	4 cut(s)	149, 151, 209, 422
BstV1I	GCAGC	2 cut(s)	393, 422
BsuRI	GGCC	2 cut(s)	39, 81
BtsCI	GGATG	2 cut(s)	188, 249
BtuMI	TCGCGA	1 cut(s)	422
Cac8I	GCNNGC	5 cut(s)	86, 151, 304, 420, 440
CfoI	GCGC	3 cut(s)	151, 153, 211
Csp6I	GTAC	1 cut(s)	274
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	4 cut(s)	24, 399, 453, 465
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	95, 113
EarI	CTCTTC	2 cut(s)	95, 113
EciI	GGCGGA	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	259, 454
Eco53kI	GAGCTC	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	2 cut(s)	259, 454
ErhI	CCWWGG	1 cut(s)	228
FaiI	YATR	5 cut(s)	72, 160, 329, 331, 387
FaqI	GGGAC	2 cut(s)	246, 305
FauI	CCCGC	1 cut(s)	447
FauNDI	CATATG	1 cut(s)	329
Fnu4HI	GCNGC	9 cut(s)	82, 200, 212, 215, 307, 310, 313, 382, 436
FokI	GGATG	2 cut(s)	175, 236
FriOI	GRGCYC	2 cut(s)	259, 454
Fsp4HI	GCNGC	9 cut(s)	82, 200, 212, 215, 307, 310, 313, 382, 436
GlaI	GCGC	3 cut(s)	150, 152, 210
GluI	GCNGC	9 cut(s)	82, 200, 212, 215, 307, 310, 313, 382, 436
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	39, 81
HhaI	GCGC	3 cut(s)	151, 153, 211
Hin6I	GCGC	3 cut(s)	149, 151, 209
HinP1I	GCGC	3 cut(s)	149, 151, 209
HinfI	GANTC	3 cut(s)	220, 234, 424
HphI	GGTGA	2 cut(s)	103, 121
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	4 cut(s)	77, 254, 347, 400
Hpy188III	TCNNGA	2 cut(s)	290, 421
Hpy8I	GTNNAC	1 cut(s)	471
Hpy99I	CGWCG	4 cut(s)	38, 101, 104, 119
HpyAV	CCTTC	2 cut(s)	40, 352
HpyCH4III	ACNGT	4 cut(s)	49, 115, 133, 247
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	2 cut(s)	327, 381
HpyF10VI	GCNNNNNNNGC	6 cut(s)	148, 159, 208, 223, 312, 387
HpyF3I	CTNAG	4 cut(s)	24, 399, 453, 465
HpySE526I	ACGT	1 cut(s)	413
HspAI	GCGC	3 cut(s)	149, 151, 209
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	462
LpnPI	CCDG	6 cut(s)	38, 77, 139, 272, 284, 288
Lsp1109I	GCAGC	2 cut(s)	393, 422
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	82, 85, 100
MhlI	GDGCHC	2 cut(s)	259, 454
MluCI	AATT	1 cut(s)	376
MlyI	GAGTC	3 cut(s)	228, 229, 418
MmeI	TCCRAC	1 cut(s)	216
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	442
MvnI	CGCG	4 cut(s)	149, 151, 209, 422
MwoI	GCNNNNNNNGC	6 cut(s)	148, 159, 208, 223, 312, 387
NdeI	CATATG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	127
NruI	TCGCGA	1 cut(s)	422
PauI	GCGCGC	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	4 cut(s)	123, 243, 351, 419
PflFI	GACNNNGTC	1 cut(s)	427
PkrI	GCNGC	9 cut(s)	83, 201, 213, 216, 308, 311, 314, 383, 437
PleI	GAGTC	3 cut(s)	228, 228, 418
PpsI	GAGTC	3 cut(s)	228, 228, 418
Ppu21I	YACGTR	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	427
PteI	GCGCGC	1 cut(s)	149
RruI	TCGCGA	1 cut(s)	422
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SacI	GAGCTC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	9 cut(s)	82, 200, 212, 215, 307, 310, 313, 382, 436
SchI	GAGTC	3 cut(s)	228, 229, 418
SduI	GDGCHC	2 cut(s)	259, 454
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	9 cut(s)	82, 200, 212, 215, 306, 309, 312, 315, 440
SstI	GAGCTC	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	4 cut(s)	49, 115, 133, 247
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	4 cut(s)	33, 237, 431, 448
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	1 cut(s)	376
TauI	GCSGC	7 cut(s)	84, 202, 214, 217, 309, 312, 315
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	381, 435
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	59
Tth111I	GACNNNGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.