Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008159

Physical Location & Seq

Genomic Coordinates Reverse (-)

17901940 .. 17902524

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTAGCTATGGCACCATGCAAAGGCCATCCACCACCTCAACATCAACACTTCCAACAACTCCTCATCCCCATGAACCAAAAGACACAACCAGAAAAACCCGCAACGACTTCAAGCTCCTCTTCCCCTTCAACATCCCCGCAACCCCCGAAGCTGCCGCGGTTCGTATCATCCGAAACTTGGGCTATTTCCGATTGTACTACATACTCTTCATATGGACCATACTCTCCATAACCCTTCTGCCTAAGCGCAAAGTTTCCTTAATTTTCTTGGTGGCAATGACTGCTGTGACCTGCTTGTACCTTGTGCTATTAAGGGTAGTACCTAATTCTGTTGTGCTGCAGAAGATCATTGATAGAAGACTGGTCCTGGCCTTGTTGGCCATTGTGACCATGGTTGAGCTCATACTTACCCGTGCAGCCCTTCATCTGTTTCTGACTTTAGGTTGTGGGACGCCAGTTGTTTTGGTTCATGCAGTTTTGAGGGTGAGAGATGATCTTTTTGTTGAGGAAGAGGCTTGCGCTGCTGGTGAATTAGTTCCACTCAGACCAACTAGTGAGCCCAAATTATCTGATGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

195

Amino Acids

21.65

Weight (kDa)

9.62

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008159)

Species	Orthologous Gene IDs
malus_domestica	MD02G1218900.v1.1 MD07G1098000.v1.1
prunus_persica	Prupe.2G122000_v2.0.a1
pyrus_communis	pycom07g08060
rosa_chinensis	RchiOBHm_Chr1g0346011 RchiOBHm_Chr1g0346041
rosa_laevigata	RLG00000028819 RLG00000028825
rosa_multiflora	Rmu_sc0003809.1_g000012 Rmu_sc0008115.1_g000001 Rmu_ssc0000255.1_g000078 Rmu_ssc0000255.1_g000081
rosa_roxburghii	Rroxscaffold_4G00308890 Rroxscaffold_4G00308940
rosa_samantha	Rh1AG196600 Rh1AG196800 Rh1BG162100 Rh1CG181500 Rh1CG181700 Rh1DG192400
rosa_wichuraiana	Rw1G016370 Rw1G016390 Rw1G016530 Rw1G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	161
AciI	CCGC	4 cut(s)	103, 141, 159, 161
AcoI	YGGCCR	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	3 cut(s)	200, 302, 324
AfiI	CCNNNNNNNGG	2 cut(s)	24, 181
AgsI	TTSAA	2 cut(s)	115, 133
AhlI	ACTAGT	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	9, 118, 155, 403
AluI	AGCT	4 cut(s)	9, 118, 155, 403
Alw21I	GWGCWC	1 cut(s)	405
AoxI	GGCC	3 cut(s)	26, 372, 381
ApeKI	GCWGC	4 cut(s)	155, 340, 419, 524
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	252, 524
AspS9I	GGNCC	2 cut(s)	219, 367
AsuHPI	GGTGA	2 cut(s)	499, 542
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	2 cut(s)	219, 367
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	405, 564
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	142, 327, 431, 511
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	371
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	2 cut(s)	6, 555
BfmI	CTRYAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	5 cut(s)	156, 159, 341, 420, 525
BlsI	GCNGC	5 cut(s)	157, 160, 342, 421, 526
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	219, 367
BmgT120I	GGNCC	2 cut(s)	219, 367
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	565
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	159, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 181
Bse1I	ACTGG	2 cut(s)	369, 458
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	159, 393
BseGI	GGATG	4 cut(s)	29, 67, 135, 171
BseLI	CCNNNNNNNGG	2 cut(s)	24, 181
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	559
BseNI	ACTGG	2 cut(s)	369, 458
BseRI	GAGGAG	2 cut(s)	54, 110
BseXI	GCAGC	4 cut(s)	142, 327, 431, 511
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	28, 374, 383
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	24, 181
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	28, 374, 383
Bsp1286I	GDGCHC	2 cut(s)	405, 564
Bsp143I	GATC	2 cut(s)	348, 496
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	4 cut(s)	103, 141, 159, 161
BspANI	GGCC	3 cut(s)	28, 374, 383
BspCNI	CTCAG	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	302
BspOI	GCTAGC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	369, 458
BssECI	CCNNGG	2 cut(s)	159, 393
BssMI	GATC	2 cut(s)	348, 496
BssNI	GRCGYC	1 cut(s)	455
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	371
Bst6I	CTCTTC	3 cut(s)	128, 215, 507
BstACI	GRCGYC	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	7, 520
BstDEI	CTNAG	2 cut(s)	246, 545
BstDSI	CCRYGG	2 cut(s)	159, 393
BstF5I	GGATG	4 cut(s)	29, 67, 135, 171
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	2 cut(s)	252, 524
BstKTI	GATC	2 cut(s)	351, 499
BstMBI	GATC	2 cut(s)	348, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 380, 524
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	341
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	142, 327, 431, 511
BstV2I	GAAGAC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	28, 374, 383
BtgI	CCRYGG	2 cut(s)	159, 393
BtsCI	GGATG	4 cut(s)	29, 67, 135, 171
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	7, 520
CfoI	GCGC	2 cut(s)	252, 524
Cfr13I	GGNCC	2 cut(s)	219, 367
Cfr42I	CCGCGG	1 cut(s)	162
CseI	GACGC	1 cut(s)	463
Csp6I	GTAC	3 cut(s)	199, 301, 323
CviAII	CATG	4 cut(s)	19, 74, 394, 473
CviQI	GTAC	3 cut(s)	199, 301, 323
DdeI	CTNAG	2 cut(s)	246, 545
DpnI	GATC	2 cut(s)	350, 498
DpnII	GATC	2 cut(s)	348, 496
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	3 cut(s)	128, 215, 507
EarI	CTCTTC	3 cut(s)	128, 215, 507
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	393
Eco24I	GRGCYC	2 cut(s)	405, 564
Eco47I	GGWCC	2 cut(s)	219, 367
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	405, 564
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	4 cut(s)	22, 77, 397, 476
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	18, 73, 393, 472
FauI	CCCGC	2 cut(s)	110, 148
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	5 cut(s)	156, 159, 341, 420, 525
FokI	GGATG	4 cut(s)	16, 54, 122, 158
FriOI	GRGCYC	2 cut(s)	405, 564
Fsp4HI	GCNGC	5 cut(s)	156, 159, 341, 420, 525
FspBI	CTAG	2 cut(s)	6, 555
GlaI	GCGC	2 cut(s)	251, 523
GluI	GCNGC	5 cut(s)	156, 159, 341, 420, 525
HaeIII	GGCC	3 cut(s)	28, 374, 383
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	2 cut(s)	252, 524
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	22, 77, 397, 476
Hin6I	GCGC	2 cut(s)	250, 522
HinP1I	GCGC	2 cut(s)	250, 522
HphI	GGTGA	2 cut(s)	499, 542
Hpy188I	TCNGA	5 cut(s)	176, 194, 438, 548, 574
HpyAV	CCTTC	3 cut(s)	139, 248, 434
HpyCH4V	TGCA	5 cut(s)	22, 343, 419, 476, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 380, 524
HpyF3I	CTNAG	2 cut(s)	246, 545
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	4 cut(s)	22, 77, 397, 476
HspAI	GCGC	2 cut(s)	250, 522
KspI	CCGCGG	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	348, 496
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	7 cut(s)	106, 307, 350, 356, 383, 471, 513
Lsp1109I	GCAGC	4 cut(s)	142, 327, 431, 511
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	6, 555
MaeIII	GTNAC	2 cut(s)	289, 388
MalI	GATC	2 cut(s)	350, 498
MboI	GATC	2 cut(s)	348, 496
MboII	GAAGA	5 cut(s)	115, 202, 358, 372, 524
MhlI	GDGCHC	2 cut(s)	405, 564
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	4 cut(s)	264, 328, 533, 566
MluNI	TGGCCA	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	49, 75, 131, 477, 502, 508
Mox20I	TGGCCA	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	2 cut(s)	263, 314
MslI	CAYNNNNRTG	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	284, 380, 524
NcoI	CCATGG	1 cut(s)	393
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	2 cut(s)	348, 496
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	22, 77, 397, 476
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	289, 388
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	537
PkrI	GCNGC	5 cut(s)	157, 160, 342, 421, 526
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	219, 367
PstI	CTGCAG	1 cut(s)	345
RsaI	GTAC	3 cut(s)	200, 302, 324
RsaNI	GTAC	3 cut(s)	199, 301, 323
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	405
SacII	CCGCGG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	263, 314
SatI	GCNGC	5 cut(s)	156, 159, 341, 420, 525
Sau3AI	GATC	2 cut(s)	348, 496
Sau96I	GGNCC	2 cut(s)	219, 367
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	405, 564
SetI	ASST	9 cut(s)	11, 41, 120, 157, 296, 306, 328, 405, 448
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	341
SfiI	GGCCNNNNNGGCC	1 cut(s)	380
Sfr303I	CCGCGG	1 cut(s)	162
SgrBI	CCGCGG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	219, 367
SmiMI	CAYNNNNRTG	1 cut(s)	72
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	4 cut(s)	264, 328, 533, 566
SsiI	CCGC	4 cut(s)	103, 141, 159, 161
SspMI	CTAG	2 cut(s)	6, 555
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	393
TasI	AATT	4 cut(s)	264, 328, 533, 566
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	263, 314
Tru9I	TTAA	2 cut(s)	263, 314
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	2 cut(s)	289, 388
TseI	GCWGC	4 cut(s)	155, 340, 419, 524
Tsp45I	GTSAC	2 cut(s)	289, 388
TspDTI	ATGAA	4 cut(s)	90, 202, 416, 461
TspRI	CASTG	1 cut(s)	585
VpaK11BI	GGWCC	2 cut(s)	219, 367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	6, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.