Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

OG0008159

Physical Location & Seq

Genomic Coordinates Forward (+)

406151 .. 406744

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000255.1_g000078.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggctagccatggcaccgtgcaaagaccatccaccacctcaacatccccaactctcccaacagctcatccccacgaaccgaaagactcaacaccaagattgaaactcgaattcagcctctgttttccattcaacatccccaagactccagaagcagcagccgcccgaatcatcagaaacttgagttactacagattgtactacacacttttcatatggatcatactcttcacaaccctcttgccggagcgcaagctctccttgatcttcttgatatcaatgacttctttaacctgctcgttacttgcagtgatgagatcagtcgttccggctgattctgttgtcctgcaatacaagatcattgataggagactgcttctggctttgctggtaattgcgaccatggttgagctcataggcacaaatgcggccatgcatctgtatgtgactttggcttgtgcgactccagtgattttggtgcatgcatttttcagggttagagattatctttgtgttgaagaggaggcttctgctgctggtgaattggttccactcacaaaaaacactgaacccaagttatcagattccgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

197

Amino Acids

21.95

Weight (kDa)

8.71

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008159)

Species	Orthologous Gene IDs
malus_domestica	MD02G1218900.v1.1 MD07G1098000.v1.1
prunus_persica	Prupe.2G122000_v2.0.a1
pyrus_communis	pycom07g08060
rosa_chinensis	RchiOBHm_Chr1g0346011 RchiOBHm_Chr1g0346041
rosa_laevigata	RLG00000028819 RLG00000028825
rosa_multiflora	Rmu_sc0003809.1_g000012 Rmu_sc0008115.1_g000001 Rmu_ssc0000255.1_g000078 Rmu_ssc0000255.1_g000081
rosa_roxburghii	Rroxscaffold_4G00308890 Rroxscaffold_4G00308940
rosa_samantha	Rh1AG196600 Rh1AG196800 Rh1BG162100 Rh1CG181500 Rh1CG181700 Rh1DG192400
rosa_wichuraiana	Rw1G016370 Rw1G016390 Rw1G016530 Rw1G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	2 cut(s)	162, 428
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	103, 133, 518
AluBI	AGCT	3 cut(s)	65, 256, 412
AluI	AGCT	3 cut(s)	65, 256, 412
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	3 cut(s)	155, 158, 533
ApoI	RAATTY	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	167, 170, 520
BccI	CCATC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	5 cut(s)	156, 159, 162, 429, 534
BlsI	GCNGC	5 cut(s)	157, 160, 163, 430, 535
BmiI	GGNNCC	2 cut(s)	16, 549
BmsI	GCATC	1 cut(s)	445
BmtI	GCTAGC	1 cut(s)	9
BpmI	CTGGAG	2 cut(s)	132, 450
BpuEI	CTTGAG	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	10, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	10, 402
BseGI	GGATG	4 cut(s)	29, 44, 67, 135
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	167, 170, 520
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	245, 329
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	219, 264, 317, 357
Bsp19I	CCATGG	2 cut(s)	10, 402
BspACI	CCGC	2 cut(s)	162, 428
BspANI	GGCC	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	16, 549
BspMI	ACCTGC	1 cut(s)	302
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	10, 402
BssMI	GATC	4 cut(s)	219, 264, 317, 357
BssT1I	CCWWGG	2 cut(s)	10, 402
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	233, 513
BstC8I	GCNNGC	3 cut(s)	7, 254, 483
BstDSI	CCRYGG	2 cut(s)	10, 402
BstF5I	GGATG	4 cut(s)	29, 44, 67, 135
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	4 cut(s)	222, 267, 320, 360
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	4 cut(s)	219, 264, 317, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 533
BstNSI	RCATGY	1 cut(s)	485
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	167, 170, 520
BsuRI	GGCC	1 cut(s)	431
BtgI	CCRYGG	2 cut(s)	10, 402
BtsCI	GGATG	4 cut(s)	29, 44, 67, 135
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	315, 474, 564
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	3 cut(s)	7, 254, 483
CaiI	CAGNNNCTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	4 cut(s)	11, 403, 433, 482
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	4 cut(s)	221, 266, 319, 359
DpnII	GATC	4 cut(s)	219, 264, 317, 357
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	233, 513
EarI	CTCTTC	2 cut(s)	233, 513
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	10, 402
Eco24I	GRGCYC	1 cut(s)	414
Eco32I	GATATC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	110
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	10, 402
EcoT22I	ATGCAT	2 cut(s)	438, 487
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	10, 402
FaeI	CATG	4 cut(s)	14, 406, 436, 485
FaiI	YATR	9 cut(s)	12, 215, 217, 224, 404, 416, 434, 444, 483
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	4 cut(s)	10, 402, 432, 481
FauNDI	CATATG	1 cut(s)	215
Fnu4HI	GCNGC	5 cut(s)	156, 159, 162, 429, 534
FokI	GGATG	4 cut(s)	16, 31, 54, 122
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	5 cut(s)	156, 159, 162, 429, 534
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	5 cut(s)	156, 159, 162, 429, 534
GsuI	CTGGAG	2 cut(s)	132, 450
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	2 cut(s)	245, 329
HhaI	GCGC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	14, 406, 436, 485
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HinfI	GANTC	6 cut(s)	86, 145, 168, 335, 463, 584
HpaII	CCGG	2 cut(s)	245, 329
HphI	GGTGA	1 cut(s)	551
Hpy188I	TCNGA	2 cut(s)	176, 583
Hpy188III	TCNNGA	2 cut(s)	149, 271
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	6 cut(s)	22, 308, 349, 436, 481, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 533
Hsp92II	CATG	4 cut(s)	14, 406, 436, 485
HspAI	GCGC	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	219, 264, 317, 357
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	167, 170, 520
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	3 cut(s)	185, 300, 445
MalI	GATC	4 cut(s)	221, 266, 319, 359
MboI	GATC	4 cut(s)	219, 264, 317, 357
MboII	GAAGA	3 cut(s)	220, 259, 530
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	110, 393, 542
MlyI	GAGTC	3 cut(s)	80, 139, 457
MnlI	CCTC	5 cut(s)	49, 128, 248, 514, 517
Mph1103I	ATGCAT	2 cut(s)	438, 487
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	2 cut(s)	245, 329
MwoI	GCNNNNNNNGC	2 cut(s)	161, 533
NcoI	CCATGG	2 cut(s)	10, 402
NdeI	CATATG	1 cut(s)	215
NdeII	GATC	4 cut(s)	219, 264, 317, 357
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	14, 406, 436, 485
NlaIV	GGNNCC	2 cut(s)	16, 549
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	2 cut(s)	438, 487
NspI	RCATGY	1 cut(s)	485
PaeI	GCATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	3 cut(s)	168, 335, 584
PkrI	GCNGC	5 cut(s)	157, 160, 163, 430, 535
PleI	GAGTC	3 cut(s)	80, 139, 457
PpsI	GAGTC	3 cut(s)	80, 139, 457
Psp124BI	GAGCTC	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	16, 549
PstNI	CAGNNNCTG	1 cut(s)	120
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	5 cut(s)	156, 159, 162, 429, 534
Sau3AI	GATC	4 cut(s)	219, 264, 317, 357
SchI	GAGTC	3 cut(s)	80, 139, 457
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	5 cut(s)	41, 67, 258, 296, 414
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	3 cut(s)	110, 393, 542
SsiI	CCGC	2 cut(s)	162, 428
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	10, 402
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	110, 393, 542
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	2 cut(s)	164, 431
TfiI	GAWTC	3 cut(s)	168, 335, 584
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	3 cut(s)	315, 474, 571
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	3 cut(s)	155, 158, 533
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	3 cut(s)	315, 474, 571
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	2 cut(s)	438, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.