Rh1DG192400

PRA1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008159
Physical Location & Seq
Reverse (-)
38288539 .. 38289820
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG192400.1

Sequence Viewer

Length: 594 bp
ATGGCTAGCCATGGCACCGTGCAAAGACCATCCACCACCACCTCAACATCCCCAACTCTCCCAACAACTCATCCCCATGAACCGAAAGACTCAACACCAAGAGTGAGACTCGAATTCAGCCTCTGTTTTCCCTTCAACATCCCCAAGACCCCAGAAGCAGCCGCGGCCCGAATCATCAGAAACTTGAGTTACTACAGATTGTACTACACACTTTTCATATGGATCATACTCTTCATAACCCTCTTGCCGAAGCGTAAGCTCTCGTTGATCTTCTTGATAGCAATGACTGCTCTGACGTGCTCGTTCTTTGCGGTGATGAGGTTAGTACCTGCTGATTCTGTTGTCCTGCAATACAAGATCATTGATAGGAGACTGGTCCTGGCTTTGCTGGTAATTGCGACCATGGTTGAGCTCATAGTCACACGTGCGGCCATACATCTGTTTGTGACTTTGGCTTGTGCGACTCCAGTGATTTTGGTGCATGCAGTTTTCAGGGTTAGAGATGATCTTTGTGTTGAAGAGGAGGCTTCTGCTGCTGGTGAATTGGTTCCACTCGTAAAAAACACTGAACCCAATTTATCAGATTCCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

197

Amino Acids

21.99

Weight (kDa)

9.0

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 44 - 175 1.5e-21 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 14
AccII CGCG 1 cut(s) 164
AciI CCGC 4 cut(s) 162, 164, 311, 428
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 1 cut(s) 113
AcvI CACGTG 1 cut(s) 425
AfaI GTAC 2 cut(s) 203, 327
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 2 cut(s) 136, 518
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 2 cut(s) 259, 412
AluI AGCT 2 cut(s) 259, 412
Alw21I GWGCWC 2 cut(s) 302, 414
Alw26I GTCTC 2 cut(s) 100, 364
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 123
AoxI GGCC 2 cut(s) 165, 429
ApeKI GCWGC 2 cut(s) 158, 533
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 546
AspS9I GGNCC 2 cut(s) 166, 376
AsuHPI GGTGA 2 cut(s) 325, 551
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 376
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 414
BbrPI CACGTG 1 cut(s) 425
Bbv12I GWGCWC 2 cut(s) 302, 414
BbvI GCAGC 2 cut(s) 170, 520
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 100, 364
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 337
BisI GCNGC 5 cut(s) 159, 162, 165, 429, 534
BlsI GCNGC 5 cut(s) 160, 163, 166, 430, 535
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 2 cut(s) 166, 376
BmiI GGNNCC 2 cut(s) 16, 549
BmrFI CCNGG 1 cut(s) 380
BmtI GCTAGC 1 cut(s) 9
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 205
BsaAI YACGTR 1 cut(s) 425
BsaJI CCNNGG 3 cut(s) 10, 162, 402
Bse1I ACTGG 2 cut(s) 378, 467
Bse3DI GCAATG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 10, 162, 402
BseGI GGATG 4 cut(s) 29, 47, 70, 138
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 2 cut(s) 378, 467
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 2 cut(s) 170, 520
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 167, 431
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 302, 414
BsmAI GTCTC 2 cut(s) 100, 364
BsnI GGCC 2 cut(s) 167, 431
Bsp1286I GDGCHC 2 cut(s) 302, 414
Bsp143I GATC 4 cut(s) 222, 267, 357, 505
Bsp19I CCATGG 2 cut(s) 10, 402
BspACI CCGC 4 cut(s) 162, 164, 311, 428
BspANI GGCC 2 cut(s) 167, 431
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 16, 549
BspMI ACCTGC 1 cut(s) 337
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 2 cut(s) 378, 467
BssECI CCNNGG 3 cut(s) 10, 162, 402
BssMI GATC 4 cut(s) 222, 267, 357, 505
BssT1I CCWWGG 2 cut(s) 10, 402
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 2 cut(s) 236, 513
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 7, 483
BstDSI CCRYGG 3 cut(s) 10, 162, 402
BstF5I GGATG 4 cut(s) 29, 47, 70, 138
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 4 cut(s) 225, 270, 360, 508
BstMAI GTCTC 2 cut(s) 100, 364
BstMBI GATC 4 cut(s) 222, 267, 357, 505
BstMWI GCNNNNNNNGC 3 cut(s) 164, 287, 533
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 193
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 170, 520
BsuRI GGCC 2 cut(s) 167, 431
BtgI CCRYGG 3 cut(s) 10, 162, 402
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 4 cut(s) 29, 47, 70, 138
BtsIMutI CAGTG 2 cut(s) 474, 564
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 7, 483
CaiI CAGNNNCTG 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 166, 376
Cfr42I CCGCGG 1 cut(s) 165
Csp6I GTAC 2 cut(s) 202, 326
CviAII CATG 4 cut(s) 11, 77, 403, 482
CviQI GTAC 2 cut(s) 202, 326
DpnI GATC 4 cut(s) 224, 269, 359, 507
DpnII GATC 4 cut(s) 222, 267, 357, 505
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 2 cut(s) 236, 513
EarI CTCTTC 2 cut(s) 236, 513
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 10, 402
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 412
Eco72I CACGTG 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 10, 402
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 2 cut(s) 10, 402
FaeI CATG 4 cut(s) 14, 80, 406, 485
FatI CATG 4 cut(s) 10, 76, 402, 481
FauNDI CATATG 1 cut(s) 218
Fnu4HI GCNGC 5 cut(s) 159, 162, 165, 429, 534
FokI GGATG 4 cut(s) 16, 34, 57, 125
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 5 cut(s) 159, 162, 165, 429, 534
FspBI CTAG 1 cut(s) 6
GluI GCNGC 5 cut(s) 159, 162, 165, 429, 534
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 167, 431
Hin1II CATG 4 cut(s) 14, 80, 406, 485
HinfI GANTC 6 cut(s) 89, 108, 171, 335, 463, 584
HphI GGTGA 2 cut(s) 325, 551
Hpy188I TCNGA 3 cut(s) 179, 294, 583
Hpy188III TCNNGA 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 2 cut(s) 296, 424
HpyCH4V TGCA 4 cut(s) 22, 349, 481, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 287, 533
HpySE526I ACGT 2 cut(s) 296, 424
Hsp92II CATG 4 cut(s) 14, 80, 406, 485
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 4 cut(s) 222, 267, 357, 505
Lsp1109I GCAGC 2 cut(s) 170, 520
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 296, 424
MaeIII GTNAC 3 cut(s) 188, 418, 445
MalI GATC 4 cut(s) 224, 269, 359, 507
MboI GATC 4 cut(s) 222, 267, 357, 505
MboII GAAGA 3 cut(s) 223, 262, 530
MhlI GDGCHC 2 cut(s) 302, 414
MluCI AATT 4 cut(s) 113, 393, 542, 574
MlyI GAGTC 3 cut(s) 83, 102, 457
MnlI CCTC 6 cut(s) 52, 131, 251, 312, 514, 517
MroXI GAANNNNTTC 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 3 cut(s) 164, 287, 533
NcoI CCATGG 2 cut(s) 10, 402
NdeI CATATG 1 cut(s) 218
NdeII GATC 4 cut(s) 222, 267, 357, 505
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 4 cut(s) 14, 80, 406, 485
NlaIV GGNNCC 2 cut(s) 16, 549
NmuCI GTSAC 2 cut(s) 418, 445
NspI RCATGY 1 cut(s) 485
PaeI GCATGC 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 3 cut(s) 171, 335, 584
PkrI GCNGC 5 cut(s) 160, 163, 166, 430, 535
PleI GAGTC 3 cut(s) 83, 102, 457
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
PpsI GAGTC 3 cut(s) 83, 102, 457
Ppu21I YACGTR 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 378
PspCI CACGTG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 16, 549
PspPI GGNCC 2 cut(s) 166, 376
PstNI CAGNNNCTG 1 cut(s) 123
RsaI GTAC 2 cut(s) 203, 327
RsaNI GTAC 2 cut(s) 202, 326
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 414
SacII CCGCGG 1 cut(s) 165
SatI GCNGC 5 cut(s) 159, 162, 165, 429, 534
Sau3AI GATC 4 cut(s) 222, 267, 357, 505
Sau96I GGNCC 2 cut(s) 166, 376
SchI GAGTC 3 cut(s) 83, 102, 457
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 302, 414
SetI ASST 7 cut(s) 44, 261, 299, 323, 331, 414, 427
SfcI CTRYAG 1 cut(s) 193
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SphI GCATGC 1 cut(s) 485
Sse9I AATT 4 cut(s) 113, 393, 542, 574
SsiI CCGC 4 cut(s) 162, 164, 311, 428
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 2 cut(s) 10, 402
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 2 cut(s) 299, 427
TaqI TCGA 1 cut(s) 111
TasI AATT 4 cut(s) 113, 393, 542, 574
TatI WGTACW 1 cut(s) 201
TauI GCSGC 3 cut(s) 164, 167, 431
TfiI GAWTC 3 cut(s) 171, 335, 584
TscAI CASTG 2 cut(s) 474, 571
TseFI GTSAC 2 cut(s) 418, 445
TseI GCWGC 2 cut(s) 158, 533
Tsp45I GTSAC 2 cut(s) 418, 445
TspDTI ATGAA 3 cut(s) 93, 205, 223
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 2 cut(s) 474, 571
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.