Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004048

Physical Location & Seq

Genomic Coordinates Reverse (-)

23323510 .. 23325682

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G195500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCGGTCTGCAGAAGCATCCAACAAACAGAGTCATCTGAACAAATCCCCTCTCCAGCGGAAGCATCCAAAAAACCATGACTCATCTGAACTGAAGACCTCTTCTGCTGAAGCGTTCAGTGGACCTAAGTCAGCTGAAATGAAAATGTCTTCTCCTGCAGAAGCGTCTAATAAACCTGATGTAACTGAAAAGAAAATTGCCTCTCCTGCAGAAGCATCCAACTCTGGAAAGAAAACCCCAAGATCATTGAAGGGCAAAGCTAAAATAGTTAATGGGAAACGGAGGCGGAATAGGTGTAACAACGAGAGTAGCAACAAAAGAGAAGAAGAAGCCAAGAAGATGAATTCAAAAAGAGAGAAACAAGAGAATATCACGAATGGAGAGCATGCCGAGAAGAGCCATCAGGCTCAAAAGACTCCAGGAAAGATTGACGAATCCGAAAAGAGCCGACAAAAACAGAAGGGTACAGAAAAACGACGTGGGTCAGACAAGAGTGTGAAGAGTCAAAGGAACAGCGAAAAACATGATGAAAAGAGGGAAAAGCTTGGTGGTTTGATCTTCATGTGCAGTGGAAAGACAAAGCCAGACTGCTTCCATTACAGTATCATGGGTGTTTCAATGGGTGAGAAAGACCTTGTGTTGGGTATCAAACCTGGGTTGAAGCTTTTTCTCTTTGATTTTGATCTTAAGCTTTTGTATGGGGTTTACAAAGCATCCTCTTCAGGTGGACTAGAACTCGAGCCAAAAGCATTTGGCGGGGCCTTCCCTGCTCAGGTGCGGTTCAACGTGGAGAAAGATTGTCTTCCTCTACCTGAGAGCGTTTTCAAGAAGGCAATACAAGAAAACTATAATGAGAAAAAGAAGTTCAAAACAGAACTTACAGTTCGACAAGAATTTCAAGCTTATTATGGTCTTCGGGGAGAGAGAAGAAACGTGTCTCCTCGTATCGTTCCTCCAGCTCTGGAAGCTCTTCATAGAGAGTATGAAAGAGAGCATCTTGCAAGACAGCCAAACCTCATTTACGGGGAGGCTGTTCCTGCACATCGAGAAAGGGTGGCTTTGGCATTTAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dev_Cell_Death

Protein Analysis

359

Amino Acids

40.36

Weight (kDa)

9.81

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32910
fragaria_vesca	FvH4_6g04800 FvH4_6g04800 FvH4_6g04800 FvH4_6g04800
malus_domestica	MD04G1213400.v1.1 MD12G1228500.v1.1
prunus_persica	Prupe.2G195500_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1
pyrus_communis	pycom04g18900 pycom12g21290
rosa_chinensis	RchiOBHm_Chr3g0453261
rosa_laevigata	RLG00000025525
rosa_multiflora	Rmu_sc0003983.1_g000005
rosa_roxburghii	Rroxscaffold_6G00430290
rosa_rugosa	Rorug02G0647900 Rorug02G0648000
rosa_samantha	Rh3AG050400 Rh3BG051600 Rh3CG051700 Rh3DG052300
rosa_wichuraiana	Rw3G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	4, 58, 286, 756, 778
AcsI	RAATTY	2 cut(s)	343, 893
AcuI	CTGAAG	3 cut(s)	113, 129, 705
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	640, 772
AflII	CTTAAG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	8 cut(s)	250, 348, 618, 661, 784, 826, 868, 899
AjiI	CACGTC	1 cut(s)	479
AjnI	CCWGG	2 cut(s)	418, 652
AluBI	AGCT	8 cut(s)	134, 260, 544, 664, 691, 902, 959, 968
AluI	AGCT	8 cut(s)	134, 260, 544, 664, 691, 902, 959, 968
Alw26I	GTCTC	1 cut(s)	942
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	759
ApoI	RAATTY	2 cut(s)	343, 893
Asp700I	GAANNNNTTC	1 cut(s)	969
AspS9I	GGNCC	2 cut(s)	122, 759
AsuHPI	GGTGA	1 cut(s)	635
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	122
BbsI	GAAGAC	4 cut(s)	101, 141, 794, 905
BccI	CCATC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	420, 654
BcoDI	GTCTC	1 cut(s)	942
BfaI	CTAG	1 cut(s)	731
BfmI	CTRYAG	3 cut(s)	9, 156, 207
BfrI	CTTAAG	1 cut(s)	686
Bme1390I	CCNGG	2 cut(s)	420, 654
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	737
BmgBI	CACGTC	1 cut(s)	479
BmgT120I	GGNCC	2 cut(s)	122, 759
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	420, 654
BmsI	GCATC	5 cut(s)	26, 73, 224, 722, 1003
BoxI	GACNNNNGTC	2 cut(s)	127, 481
BpiI	GAAGAC	4 cut(s)	101, 141, 794, 905
BpmI	CTGGAG	3 cut(s)	38, 402, 939
Bpu10I	CCTNAGC	1 cut(s)	771
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	2 cut(s)	640, 772
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	2 cut(s)	420, 654
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	4 cut(s)	17, 64, 215, 713
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	2 cut(s)	640, 772
BseMII	CTCAG	2 cut(s)	785, 804
BseRI	GAGGAG	1 cut(s)	930
BsgI	GTGCAG	2 cut(s)	586, 1023
BshFI	GGCC	1 cut(s)	761
BsiHKCI	CYCGRG	1 cut(s)	737
BslI	CCNNNNNNNGG	2 cut(s)	640, 772
BsmAI	GTCTC	1 cut(s)	942
BsnI	GGCC	1 cut(s)	761
BsoBI	CYCGRG	1 cut(s)	737
Bsp143I	GATC	3 cut(s)	242, 555, 682
BspACI	CCGC	5 cut(s)	4, 58, 286, 756, 778
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	2 cut(s)	784, 805
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	3 cut(s)	13, 160, 211
BspQI	GCTCTTC	2 cut(s)	389, 975
BspTI	CTTAAG	1 cut(s)	686
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	3 cut(s)	242, 555, 682
Bst2UI	CCWGG	2 cut(s)	420, 654
Bst4CI	ACNGT	2 cut(s)	602, 883
Bst6I	CTCTTC	5 cut(s)	106, 389, 494, 724, 975
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	126, 771, 813
BstF5I	GGATG	4 cut(s)	17, 64, 215, 713
BstKTI	GATC	3 cut(s)	245, 558, 685
BstMAI	GTCTC	1 cut(s)	942
BstMBI	GATC	3 cut(s)	242, 555, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 767, 965, 1037
BstNI	CCWGG	2 cut(s)	420, 654
BstNSI	RCATGY	1 cut(s)	389
BstPAI	GACNNNNGTC	2 cut(s)	127, 481
BstSCI	CCNGG	2 cut(s)	418, 652
BstSFI	CTRYAG	3 cut(s)	9, 156, 207
BstV2I	GAAGAC	4 cut(s)	101, 141, 794, 905
BsuRI	GGCC	1 cut(s)	761
BtrI	CACGTC	1 cut(s)	479
BtsCI	GGATG	4 cut(s)	17, 64, 215, 713
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	2 cut(s)	124, 574
Cac8I	GCNNGC	1 cut(s)	387
Cfr13I	GGNCC	2 cut(s)	122, 759
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	5 cut(s)	77, 386, 524, 562, 607
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	3 cut(s)	126, 771, 813
DpnI	GATC	3 cut(s)	244, 557, 684
DpnII	GATC	3 cut(s)	242, 555, 682
DraI	TTTAAA	1 cut(s)	1069
Eam1104I	CTCTTC	5 cut(s)	106, 389, 494, 724, 975
EarI	CTCTTC	5 cut(s)	106, 389, 494, 724, 975
EciI	GGCGGA	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	113, 129, 705
Eco88I	CYCGRG	1 cut(s)	737
EcoO109I	RGGNCCY	1 cut(s)	759
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	2 cut(s)	418, 652
FaeI	CATG	5 cut(s)	80, 389, 527, 565, 610
FalI	AAGNNNNNCTT	4 cut(s)	786, 818, 1042, 1074
FatI	CATG	5 cut(s)	76, 385, 523, 561, 606
FauI	CCCGC	1 cut(s)	749
FokI	GGATG	4 cut(s)	4, 51, 202, 700
FspBI	CTAG	1 cut(s)	731
GsuI	CTGGAG	3 cut(s)	38, 402, 939
HaeIII	GGCC	1 cut(s)	761
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	80, 389, 527, 565, 610
HindIII	AAGCTT	4 cut(s)	542, 662, 689, 900
HinfI	GANTC	5 cut(s)	31, 80, 415, 434, 502
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	3 cut(s)	122, 706, 728
Hpy188I	TCNGA	4 cut(s)	39, 88, 439, 487
Hpy188III	TCNNGA	5 cut(s)	225, 373, 826, 962, 1046
Hpy8I	GTNNAC	3 cut(s)	122, 706, 728
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	4 cut(s)	244, 454, 772, 823
HpyCH4III	ACNGT	2 cut(s)	602, 883
HpyCH4IV	ACGT	3 cut(s)	478, 786, 933
HpyCH4V	TGCA	6 cut(s)	11, 158, 209, 567, 1001, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 767, 965, 1037
HpyF3I	CTNAG	3 cut(s)	126, 771, 813
HpySE526I	ACGT	3 cut(s)	478, 786, 933
Hsp92II	CATG	5 cut(s)	80, 389, 527, 565, 610
Kzo9I	GATC	3 cut(s)	242, 555, 682
LguI	GCTCTTC	2 cut(s)	389, 975
LweI	GCATC	5 cut(s)	26, 73, 224, 722, 1003
MaeI	CTAG	1 cut(s)	731
MaeII	ACGT	3 cut(s)	478, 786, 933
MaeIII	GTNAC	2 cut(s)	181, 296
MalI	GATC	3 cut(s)	244, 557, 684
MboI	GATC	3 cut(s)	242, 555, 682
MluCI	AATT	3 cut(s)	195, 343, 893
MlyI	GAGTC	4 cut(s)	40, 74, 409, 511
MmeI	TCCRAC	2 cut(s)	45, 243
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	3 cut(s)	270, 687, 1068
MspA1I	CMGCKG	2 cut(s)	58, 134
MspCI	CTTAAG	1 cut(s)	686
MspR9I	CCNGG	2 cut(s)	420, 654
MvaI	CCWGG	2 cut(s)	420, 654
MwoI	GCNNNNNNNGC	4 cut(s)	206, 767, 965, 1037
NdeII	GATC	3 cut(s)	242, 555, 682
NlaIII	CATG	5 cut(s)	80, 389, 527, 565, 610
NlaIV	GGNNCC	1 cut(s)	760
NmeAIII	GCCGAG	1 cut(s)	415
NspI	RCATGY	1 cut(s)	389
PaeI	GCATGC	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	737
PciSI	GCTCTTC	2 cut(s)	389, 975
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	418
PleI	GAGTC	4 cut(s)	39, 74, 409, 510
PpsI	GAGTC	4 cut(s)	39, 74, 409, 510
PshAI	GACNNNNGTC	2 cut(s)	127, 481
Psp6I	CCWGG	2 cut(s)	418, 652
PspGI	CCWGG	2 cut(s)	418, 652
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	2 cut(s)	122, 759
PspXI	VCTCGAGB	1 cut(s)	737
PstI	CTGCAG	3 cut(s)	13, 160, 211
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SapI	GCTCTTC	2 cut(s)	389, 975
SaqAI	TTAA	3 cut(s)	270, 687, 1068
Sau3AI	GATC	3 cut(s)	242, 555, 682
Sau96I	GGNCC	2 cut(s)	122, 759
SchI	GAGTC	4 cut(s)	40, 74, 409, 511
ScrFI	CCNGG	2 cut(s)	420, 654
SfaNI	GCATC	5 cut(s)	26, 73, 224, 722, 1003
SfcI	CTRYAG	3 cut(s)	9, 156, 207
Sfr274I	CTCGAG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	737
SmiI	ATTTAAAT	1 cut(s)	1069
SmlI	CTYRAG	2 cut(s)	686, 737
SmoI	CTYRAG	2 cut(s)	686, 737
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	3 cut(s)	195, 343, 893
SsiI	CCGC	5 cut(s)	4, 58, 286, 756, 778
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	2 cut(s)	418, 652
SwaI	ATTTAAAT	1 cut(s)	1069
TaaI	ACNGT	2 cut(s)	602, 883
TaiI	ACGT	3 cut(s)	481, 789, 936
TaqI	TCGA	3 cut(s)	738, 886, 1045
TasI	AATT	3 cut(s)	195, 343, 893
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	270, 687, 1068
Tru9I	TTAA	3 cut(s)	270, 687, 1068
TscAI	CASTG	2 cut(s)	124, 574
TspDTI	ATGAA	6 cut(s)	155, 356, 543, 550, 962, 999
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	124, 574
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	343, 893
XceI	RCATGY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.