Rw3G003860

BONZAI 3-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
3327341 .. 3332312
4972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003860.1

Sequence Viewer

Length: 2250 bp
ATGAATCTGGGATTTTCCAGAATAGGGCGAAGGATGGAAGGTGTTTTGGCCTTCATTTGCCTTTTATTTTATTTTTTTACAACTGAGTTAGAAGCATTGAATAATCCAGAGTCATCAGGTTATATCTCCTCTCCTGCAGAAGCACCCAACAAACCGGAGTCATCTGAACAGGAGAGCCCCTCTTCTGTGGAAGTGCTGAGTACACCTGAGTTAGAAGTCTTGAATATTTTTCCAGAGTCATCTGACCATATCCATTCTTCTGCAGAAGCACCCAAAAAACCCGAGTCATCAAACATCCCCTCTTCTGCTGAAGTGCTCAATAGACCCGAGTTAGAACTGTTGAATAATCCAGATTTATCTGACCATATCCCCTCTGCTGCAGAAGCAACTAACAAACCAGAGTCATCCGAATTAAAGATCCCCTCTTCTGCTGACGTACTCAGTACACCTGAGTCAGCTGCAAATAAAATGTCGTCTCCTGCAGAAGCATCAAAAAAACCTGATTCGACTGAAAAGAAAGCCGTGTCCCCTGCAGAAGCATCAAATACTAGAAAGAAAACCCCAAAATCATTGAAGGGCAAAGCTAAAATCGTGAAGAAATCTCTGATTGATAACAGTTTGAAAGGTAGCAAAGCTACTAGTAGTTCGCTGGTTAATGCGAAGAGGAGGAGGTTCAGGAATAAGGGTCCCAAAGAGAGCAGCAACAAAAGAGAAGATGTGAAGAAGGTGAGTTCAAGAAAAGATAAGCAACAGAAAAATACCGATGAACAGCAGACAGATAAGAGCCATCAGGCACAAAAGAATAAAGGCAAGGTGGACGAAGTTGAAAAGAGCCAACAAAAGAATACAGAAAAACGTCATGGGCCGGACAAGAGTGTAAAGAGTGAAATGAATGGCAAAAAACGTGATGAAAAGAGAGAAAAGCTTGGTGGTTTAATATTCATGTGCAGTGGAAAGACAAAGCCAGACTGCTTCCATTATCGTATAATGGGTGTTTCAGTGGGTAAAAAAGACACTGTGTTGGGTATTAAACCTGGGTTGAAGCTTTTTCTCTATGATTTTGACCTTAAGCTTTTGTACGGAGTTTACAAGGCATCCTCTTCAGGTGGCTTAAAACTCGAGCCAAAAGCTTTTGGTGGGGCCTTCCCTGCTCAGGTTCGGTTCAATGTGGAGAAAGATTGCCTTCCTCTGCATGAAAGAGTTTTCAGGAAGGCAATAAAGGAAAACTATGATGAGAAGAACAAGTTCAAAACAGAACTTACAGTTCGACAAGTCAGGAAGCTCACAGCACTTTTCCGACCAGCTCAAGTTCATTTATCTTCTCTACCCACACGTTCCCCACTCAGGGCAGACAATCGGGATAGGGAAACTCATGGGAGGGAGAGAGAAGTGCTGCCACTTTCACATAGGGATGCACATGCTAGAGATCCCTATCCCAATGGCAATGCCAGGAGTTATCCAGCGTTAGCTCATGAAAGGGAGCAGCATGCAAGGAGAGAGGAAATTCCTCGTGATTTGTACCTCTCCGAAAAGGAATATCGAGCTTATGGTCTTCAAGGAGAGAGAAGAAATCTGGCTCCTCGCCCTGTTAGTCCAGCTGTAGAAGTTCAGCACAGAGATTATGAAAGGGACCATTTTGTAAGACAGCCAAACCTTTATAGGGAGGCTGCCTCTGTACATCGAGAAACTGTTCCTTCTGATCCTCTCTACTTGAATGAGAAAGAGTACCCAGCTTATACTGTTGGTGCTAGACATGAGTTGCCTGCTGCAACAGCTGCTGCCGCTGTAGATTTGTATGCAAGGGATCCTTACTATAGTAACTATAGCTATTATGGGGCTTCATCATTGGACCAATATACAGCCCCTCAGAGGAGAGAGGAGGTTCCTTTAGGATCTTACTTAGCTGGTGCAAGGAGAGAATCTTACCTGGTTGAGAATGATCCCATGCAAAGGAGAGCACCTGATCATGTAGAGAGAAGTTTGTACTCCGCACATGCTGCTGCTGCCATTGATGATCGTTTAGAGAGAAGCTTATATTCAGGACGTGCTGGAGGCGATGATCGTTTAGAGAGAAGCTTATACTCGGCACGTGCTGCAGGCGATGATCGTTTAGAGATAAGCTTATACTCGGCACGTGCTGCTACTGCTCTGGATGCTGTTGCTCCATACCAGGTGACGAAGCCTGAAGCTCTGCGTACACCAGTTTCATCTCGCTATGCATTTGCTGGTGCATCATACTCCTATCGCTAG
Functional Annotation

Protein Analysis

749

Amino Acids

83.9

Weight (kDa)

9.34

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 310 - 432 1.6e-48 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 1782, 1989
AclWI GGATC 7 cut(s) 412, 1421, 1694, 1799, 1812, 1900, 1934
AcsI RAATTY 1 cut(s) 1503
AcuI CTGAAG 3 cut(s) 330, 1086, 2205
AcvI CACGTG 2 cut(s) 2090, 2135
AfaI GTAC 9 cut(s) 202, 438, 445, 1079, 1520, 1677, 1727, 1985, 2197
AfiI CCNNNNNNNGG 7 cut(s) 24, 1153, 1344, 1345, 1660, 1869, 1950
AflII CTTAAG 1 cut(s) 1067
AflIII ACRYGT 1 cut(s) 1331
AhlI ACTAGT 1 cut(s) 638
AjiI CACGTC 1 cut(s) 2045
AjnI CCWGG 4 cut(s) 1033, 1448, 1926, 2169
Alw21I GWGCWC 2 cut(s) 318, 1960
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 7 cut(s) 412, 1421, 1694, 1799, 1812, 1900, 1934
AlwNI CAGNNNCTG 1 cut(s) 1778
Ama87I CYCGRG 3 cut(s) 281, 326, 1118
AoxI GGCC 3 cut(s) 48, 863, 1140
ApoI RAATTY 1 cut(s) 1503
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
Asp700I GAANNNNTTC 2 cut(s) 1244, 1689
AspS9I GGNCC 5 cut(s) 686, 863, 1140, 1630, 1849
AsuHPI GGTGA 2 cut(s) 739, 2185
AvaI CYCGRG 3 cut(s) 281, 326, 1118
AvaII GGWCC 3 cut(s) 686, 1630, 1849
BamHI GGATCC 1 cut(s) 1804
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 1509
BbrPI CACGTG 2 cut(s) 2090, 2135
BbsI GAAGAC 1 cut(s) 1544
Bbv12I GWGCWC 2 cut(s) 318, 1960
BccI CCATC 2 cut(s) 28, 795
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 4 cut(s) 1035, 1450, 1928, 2171
BclI TGATCA 1 cut(s) 1963
BcoDI GTCTC 1 cut(s) 480
BcuI ACTAGT 1 cut(s) 638
BfaI CTAG 5 cut(s) 549, 639, 1422, 1749, 2248
BfrI CTTAAG 1 cut(s) 1067
Bme1390I CCNGG 4 cut(s) 1035, 1450, 1928, 2171
Bme18I GGWCC 3 cut(s) 686, 1630, 1849
BmeT110I CYCGRG 3 cut(s) 281, 326, 1118
BmgBI CACGTC 1 cut(s) 2045
BmgT120I GGNCC 5 cut(s) 686, 863, 1140, 1630, 1849
BmiI GGNNCC 7 cut(s) 687, 688, 1141, 1578, 1631, 1806, 1884
BmrFI CCNGG 4 cut(s) 1035, 1450, 1928, 2171
BmsI GCATC 6 cut(s) 497, 548, 1103, 1402, 2143, 2240
BpiI GAAGAC 1 cut(s) 1544
BplI GAGNNNNNCTC 4 cut(s) 164, 196, 1655, 1687
BpmI CTGGAG 1 cut(s) 2070
Bpu10I CCTNAGC 1 cut(s) 1152
BpuEI CTTGAG 1 cut(s) 1290
BsaAI YACGTR 2 cut(s) 2090, 2135
BsaBI GATNNNNATC 1 cut(s) 1431
BsaJI CCNNGG 1 cut(s) 1034
BsaWI WCCGGW 1 cut(s) 154
Bsc4I CCNNNNNNNGG 7 cut(s) 24, 1153, 1344, 1345, 1660, 1869, 1950
Bse1I ACTGG 1 cut(s) 2201
Bse3DI GCAATG 1 cut(s) 1450
Bse8I GATNNNNATC 1 cut(s) 1431
BseBI CCWGG 4 cut(s) 1035, 1450, 1928, 2171
BseDI CCNNGG 1 cut(s) 1034
BseGI GGATG 6 cut(s) 39, 294, 404, 1094, 1417, 2158
BseJI GATNNNNATC 1 cut(s) 1431
BseLI CCNNNNNNNGG 7 cut(s) 24, 1153, 1344, 1345, 1660, 1869, 1950
BseMI GCAATG 1 cut(s) 1450
BseMII CTCAG 8 cut(s) 75, 188, 198, 441, 454, 1166, 1357, 1880
BseNI ACTGG 1 cut(s) 2201
BseRI GAGGAG 6 cut(s) 118, 679, 682, 1569, 1885, 1892
BseYI CCCAGC 1 cut(s) 1729
BsgI GTGCAG 1 cut(s) 967
BshFI GGCC 3 cut(s) 50, 865, 1142
BsiHKAI GWGCWC 2 cut(s) 318, 1960
BsiHKCI CYCGRG 3 cut(s) 281, 326, 1118
BsiSI CCGG 2 cut(s) 155, 866
BslFI GGGAC 3 cut(s) 511, 672, 1643
BslI CCNNNNNNNGG 7 cut(s) 24, 1153, 1344, 1345, 1660, 1869, 1950
BsmAI GTCTC 1 cut(s) 480
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 3 cut(s) 511, 672, 1643
BsnI GGCC 3 cut(s) 50, 865, 1142
BsoBI CYCGRG 3 cut(s) 281, 326, 1118
Bsp1286I GDGCHC 3 cut(s) 179, 318, 1960
Bsp1407I TGTACA 1 cut(s) 1675
BspACI CCGC 2 cut(s) 1782, 1989
BspANI GGCC 3 cut(s) 50, 865, 1142
BspCNI CTCAG 8 cut(s) 76, 189, 199, 442, 453, 1165, 1356, 1879
BspHI TCATGA 1 cut(s) 1471
BspLI GGNNCC 7 cut(s) 687, 688, 1141, 1578, 1631, 1806, 1884
BspMAI CTGCAG 6 cut(s) 139, 265, 382, 484, 535, 2098
BspPI GGATC 7 cut(s) 412, 1421, 1694, 1799, 1812, 1900, 1934
BspTI CTTAAG 1 cut(s) 1067
BsrDI GCAATG 1 cut(s) 1450
BsrGI TGTACA 1 cut(s) 1675
BsrI ACTGG 1 cut(s) 2201
BssECI CCNNGG 1 cut(s) 1034
BssSI CACGAG 1 cut(s) 1509
Bst2BI CACGAG 1 cut(s) 1509
Bst2UI CCWGG 4 cut(s) 1035, 1450, 1928, 2171
Bst4CI ACNGT 6 cut(s) 339, 617, 1018, 1264, 1690, 1741
Bst6I CTCTTC 5 cut(s) 187, 307, 430, 656, 1105
BstAFI CTTAAG 1 cut(s) 1067
BstAPI GCANNNNNTGC 4 cut(s) 1775, 1997, 2093, 2138
BstAUI TGTACA 1 cut(s) 1675
BstBAI YACGTR 2 cut(s) 2090, 2135
BstC8I GCNNGC 3 cut(s) 1488, 1764, 2098
BstDEI CTNAG 9 cut(s) 84, 197, 207, 440, 450, 1152, 1343, 1866, 1900
BstF5I GGATG 6 cut(s) 39, 294, 404, 1094, 1417, 2158
BstMAI GTCTC 1 cut(s) 480
BstNI CCWGG 4 cut(s) 1035, 1450, 1928, 2171
BstNSI RCATGY 3 cut(s) 1421, 1490, 1997
BstSCI CCNGG 4 cut(s) 1033, 1448, 1926, 2169
BstV2I GAAGAC 1 cut(s) 1544
BstX2I RGATCY 4 cut(s) 417, 1426, 1804, 1892
BstYI RGATCY 4 cut(s) 417, 1426, 1804, 1892
BsuRI GGCC 3 cut(s) 50, 865, 1142
BtgZI GCGATG 2 cut(s) 2070, 2115
BtrI CACGTC 1 cut(s) 2045
BtsCI GGATG 6 cut(s) 39, 294, 404, 1094, 1417, 2158
BtsI GCAGTG 1 cut(s) 955
BtsIMutI CAGTG 3 cut(s) 955, 1005, 1014
Cac8I GCNNGC 3 cut(s) 1488, 1764, 2098
CaiI CAGNNNCTG 1 cut(s) 1778
CciI TCATGA 1 cut(s) 1471
Cfr13I GGNCC 5 cut(s) 686, 863, 1140, 1630, 1849
CsiI ACCWGGT 2 cut(s) 1926, 2169
Csp6I GTAC 9 cut(s) 201, 437, 444, 1078, 1519, 1676, 1726, 1984, 2196
CviQI GTAC 9 cut(s) 201, 437, 444, 1078, 1519, 1676, 1726, 1984, 2196
DdeI CTNAG 9 cut(s) 84, 197, 207, 440, 450, 1152, 1343, 1866, 1900
Eam1104I CTCTTC 5 cut(s) 187, 307, 430, 656, 1105
EarI CTCTTC 5 cut(s) 187, 307, 430, 656, 1105
Eco24I GRGCYC 1 cut(s) 179
Eco47I GGWCC 3 cut(s) 686, 1630, 1849
Eco57I CTGAAG 3 cut(s) 330, 1086, 2205
Eco72I CACGTG 2 cut(s) 2090, 2135
Eco88I CYCGRG 3 cut(s) 281, 326, 1118
EcoO109I RGGNCCY 2 cut(s) 686, 1140
EcoRII CCWGG 4 cut(s) 1033, 1448, 1926, 2169
EcoT22I ATGCAT 1 cut(s) 2221
EcoT38I GRGCYC 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 480
FalI AAGNNNNNCTT 4 cut(s) 1167, 1199, 1792, 1824
FaqI GGGAC 3 cut(s) 511, 672, 1643
FbaI TGATCA 1 cut(s) 1963
FokI GGATG 6 cut(s) 46, 281, 391, 1081, 1424, 2165
FriOI GRGCYC 1 cut(s) 179
FspBI CTAG 5 cut(s) 549, 639, 1422, 1749, 2248
GsaI CCCAGC 1 cut(s) 1733
GsuI CTGGAG 1 cut(s) 2070
HaeIII GGCC 3 cut(s) 50, 865, 1142
HapII CCGG 2 cut(s) 155, 866
HindIII AAGCTT 7 cut(s) 923, 1043, 1070, 1128, 2029, 2074, 2119
HinfI GANTC 9 cut(s) 4, 110, 158, 236, 284, 401, 452, 503, 1919
HpaII CCGG 2 cut(s) 155, 866
HphI GGTGA 2 cut(s) 739, 2185
Hpy166II GTNNAC 5 cut(s) 203, 446, 817, 1087, 2198
Hpy188I TCNGA 9 cut(s) 166, 244, 361, 409, 606, 1298, 1528, 1699, 1869
Hpy8I GTNNAC 5 cut(s) 203, 446, 817, 1087, 2198
HpyAV CCTTC 9 cut(s) 24, 32, 61, 568, 718, 1153, 1193, 1204, 1704
HpyCH4III ACNGT 6 cut(s) 339, 617, 1018, 1264, 1690, 1741
HpyCH4IV ACGT 7 cut(s) 435, 856, 904, 1333, 2044, 2089, 2134
HpyF3I CTNAG 9 cut(s) 84, 197, 207, 440, 450, 1152, 1343, 1866, 1900
HpySE526I ACGT 7 cut(s) 435, 856, 904, 1333, 2044, 2089, 2134
KflI GGGWCCC 1 cut(s) 686
Ksp22I TGATCA 1 cut(s) 1963
LmnI GCTCC 3 cut(s) 1480, 1582, 2167
LweI GCATC 6 cut(s) 497, 548, 1103, 1402, 2143, 2240
MabI ACCWGGT 2 cut(s) 1926, 2169
MaeI CTAG 5 cut(s) 549, 639, 1422, 1749, 2248
MaeII ACGT 7 cut(s) 435, 856, 904, 1333, 2044, 2089, 2134
MaeIII GTNAC 2 cut(s) 1817, 2173
MflI RGATCY 4 cut(s) 417, 1426, 1804, 1892
MhlI GDGCHC 3 cut(s) 179, 318, 1960
MluCI AATT 2 cut(s) 410, 1503
MlyI GAGTC 6 cut(s) 119, 167, 245, 293, 410, 461
MmeI TCCRAC 1 cut(s) 1321
Mph1103I ATGCAT 1 cut(s) 2221
MroXI GAANNNNTTC 2 cut(s) 1244, 1689
MseI TTAA 6 cut(s) 413, 654, 935, 1029, 1068, 1112
MslI CAYNNNNRTG 1 cut(s) 1410
MspA1I CMGCKG 4 cut(s) 458, 1598, 1775, 1784
MspCI CTTAAG 1 cut(s) 1067
MspI CCGG 2 cut(s) 155, 866
MspR9I CCNGG 4 cut(s) 1035, 1450, 1928, 2171
MvaI CCWGG 4 cut(s) 1035, 1450, 1928, 2171
NlaIV GGNNCC 7 cut(s) 687, 688, 1141, 1578, 1631, 1806, 1884
NmeAIII GCCGAG 2 cut(s) 2063, 2108
NmuCI GTSAC 1 cut(s) 2173
NsiI ATGCAT 1 cut(s) 2221
NspI RCATGY 3 cut(s) 1421, 1490, 1997
PaeI GCATGC 1 cut(s) 1490
PaeR7I CTCGAG 1 cut(s) 1118
PagI TCATGA 1 cut(s) 1471
PdmI GAANNNNTTC 2 cut(s) 1244, 1689
PfeI GAWTC 3 cut(s) 4, 503, 1919
PleI GAGTC 6 cut(s) 118, 166, 244, 292, 409, 460
PmaCI CACGTG 2 cut(s) 2090, 2135
PmlI CACGTG 2 cut(s) 2090, 2135
PpsI GAGTC 6 cut(s) 118, 166, 244, 292, 409, 460
Ppu21I YACGTR 2 cut(s) 2090, 2135
PpuMI RGGWCCY 1 cut(s) 686
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 4 cut(s) 1033, 1448, 1926, 2169
PspCI CACGTG 2 cut(s) 2090, 2135
PspFI CCCAGC 1 cut(s) 1729
PspGI CCWGG 4 cut(s) 1033, 1448, 1926, 2169
PspN4I GGNNCC 7 cut(s) 687, 688, 1141, 1578, 1631, 1806, 1884
PspPI GGNCC 5 cut(s) 686, 863, 1140, 1630, 1849
PspPPI RGGWCCY 1 cut(s) 686
PspXI VCTCGAGB 1 cut(s) 1118
PstI CTGCAG 6 cut(s) 139, 265, 382, 484, 535, 2098
PstNI CAGNNNCTG 1 cut(s) 1778
PsuI RGATCY 4 cut(s) 417, 1426, 1804, 1892
PvuII CAGCTG 3 cut(s) 458, 1598, 1775
RsaI GTAC 9 cut(s) 202, 438, 445, 1079, 1520, 1677, 1727, 1985, 2197
RsaNI GTAC 9 cut(s) 201, 437, 444, 1078, 1519, 1676, 1726, 1984, 2196
RseI CAYNNNNRTG 1 cut(s) 1410
SaqAI TTAA 6 cut(s) 413, 654, 935, 1029, 1068, 1112
Sau96I GGNCC 5 cut(s) 686, 863, 1140, 1630, 1849
SchI GAGTC 6 cut(s) 119, 167, 245, 293, 410, 461
ScrFI CCNGG 4 cut(s) 1035, 1450, 1928, 2171
SduI GDGCHC 3 cut(s) 179, 318, 1960
SexAI ACCWGGT 2 cut(s) 1926, 2169
SfaNI GCATC 6 cut(s) 497, 548, 1103, 1402, 2143, 2240
Sfr274I CTCGAG 1 cut(s) 1118
SinI GGWCC 3 cut(s) 686, 1630, 1849
SlaI CTCGAG 1 cut(s) 1118
SmiMI CAYNNNNRTG 1 cut(s) 1410
SmlI CTYRAG 3 cut(s) 1067, 1118, 1305
SmoI CTYRAG 3 cut(s) 1067, 1118, 1305
SpeI ACTAGT 1 cut(s) 638
SphI GCATGC 1 cut(s) 1490
Sse9I AATT 2 cut(s) 410, 1503
SsiI CCGC 2 cut(s) 1782, 1989
SspI AATATT 2 cut(s) 226, 939
SspMI CTAG 5 cut(s) 549, 639, 1422, 1749, 2248
StyD4I CCNGG 4 cut(s) 1033, 1448, 1926, 2169
TaaI ACNGT 6 cut(s) 339, 617, 1018, 1264, 1690, 1741
TaiI ACGT 7 cut(s) 438, 859, 907, 1336, 2047, 2092, 2137
TaqI TCGA 5 cut(s) 506, 1119, 1267, 1540, 1681
TasI AATT 2 cut(s) 410, 1503
TatI WGTACW 4 cut(s) 200, 443, 1675, 1983
TauI GCSGC 1 cut(s) 1784
TfiI GAWTC 3 cut(s) 4, 503, 1919
Tru1I TTAA 6 cut(s) 413, 654, 935, 1029, 1068, 1112
Tru9I TTAA 6 cut(s) 413, 654, 935, 1029, 1068, 1112
TscAI CASTG 3 cut(s) 955, 1005, 1021
TseFI GTSAC 1 cut(s) 2173
Tsp45I GTSAC 1 cut(s) 2173
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 3 cut(s) 955, 1005, 1021
Vha464I CTTAAG 1 cut(s) 1067
VpaK11BI GGWCC 3 cut(s) 686, 1630, 1849
XapI RAATTY 1 cut(s) 1503
XceI RCATGY 3 cut(s) 1421, 1490, 1997
XhoI CTCGAG 1 cut(s) 1118
XmnI GAANNNNTTC 2 cut(s) 1244, 1689
XspI CTAG 5 cut(s) 549, 639, 1422, 1749, 2248
Zsp2I ATGCAT 1 cut(s) 2221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.