BONZAI 3-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G32910 |
| fragaria_vesca | FvH4_6g04800 FvH4_6g04800 FvH4_6g04800 FvH4_6g04800 |
| malus_domestica | MD04G1213400.v1.1 MD12G1228500.v1.1 |
| prunus_persica | Prupe.2G195500_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 Prupe.6G333600_v2.0.a1 |
| pyrus_communis | pycom04g18900 pycom12g21290 |
| rosa_chinensis | RchiOBHm_Chr3g0453261 |
| rosa_laevigata | RLG00000025525 |
| rosa_multiflora | Rmu_sc0003983.1_g000005 |
| rosa_roxburghii | Rroxscaffold_6G00430290 |
| rosa_rugosa | Rorug02G0647900 Rorug02G0648000 |
| rosa_samantha | Rh3AG050400 Rh3BG051600 Rh3CG051700 Rh3DG052300 |
| rosa_wichuraiana | Rw3G003860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 1875, 2082 |
| AclWI | GGATC | 9 cut(s) | 12, 139, 505, 1514, 1787, 1892, 1905, 1993, 2027 |
| AcsI | RAATTY | 1 cut(s) | 1595 |
| AcuI | CTGAAG | 3 cut(s) | 423, 1179, 2349 |
| AcvI | CACGTG | 2 cut(s) | 2183, 2279 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 59, 1246, 1437, 1438, 1753, 1962, 2043 |
| AflII | CTTAAG | 1 cut(s) | 1160 |
| AflIII | ACRYGT | 1 cut(s) | 1424 |
| AhlI | ACTAGT | 1 cut(s) | 731 |
| AjiI | CACGTC | 1 cut(s) | 2138 |
| AjnI | CCWGG | 4 cut(s) | 1126, 1541, 2019, 2313 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 129, 161 |
| Alw21I | GWGCWC | 2 cut(s) | 411, 2053 |
| Alw26I | GTCTC | 1 cut(s) | 573 |
| AlwI | GGATC | 9 cut(s) | 12, 139, 505, 1514, 1787, 1892, 1905, 1993, 2027 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1871 |
| Ama87I | CYCGRG | 4 cut(s) | 299, 374, 419, 1211 |
| AoxI | GGCC | 2 cut(s) | 956, 1233 |
| ApoI | RAATTY | 1 cut(s) | 1595 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 548, 580 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1337, 1782 |
| AspS9I | GGNCC | 5 cut(s) | 779, 956, 1233, 1723, 1942 |
| AsuHPI | GGTGA | 3 cut(s) | 832, 2255, 2329 |
| AvaI | CYCGRG | 4 cut(s) | 299, 374, 419, 1211 |
| AvaII | GGWCC | 3 cut(s) | 779, 1723, 1942 |
| BamHI | GGATCC | 1 cut(s) | 1897 |
| BanII | GRGCYC | 1 cut(s) | 272 |
| BauI | CACGAG | 1 cut(s) | 1602 |
| BbrPI | CACGTG | 2 cut(s) | 2183, 2279 |
| BbsI | GAAGAC | 1 cut(s) | 1637 |
| Bbv12I | GWGCWC | 2 cut(s) | 411, 2053 |
| BccI | CCATC | 1 cut(s) | 888 |
| BceAI | ACGGC | 1 cut(s) | 599 |
| BciT130I | CCWGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| BclI | TGATCA | 1 cut(s) | 2056 |
| BcoDI | GTCTC | 1 cut(s) | 573 |
| BcuI | ACTAGT | 1 cut(s) | 731 |
| BfaI | CTAG | 5 cut(s) | 642, 732, 1515, 1842, 2392 |
| BfrI | CTTAAG | 1 cut(s) | 1160 |
| Bme1390I | CCNGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| Bme18I | GGWCC | 3 cut(s) | 779, 1723, 1942 |
| BmeT110I | CYCGRG | 4 cut(s) | 299, 374, 419, 1211 |
| BmgBI | CACGTC | 1 cut(s) | 2138 |
| BmgT120I | GGNCC | 5 cut(s) | 779, 956, 1233, 1723, 1942 |
| BmiI | GGNNCC | 7 cut(s) | 780, 781, 1234, 1671, 1724, 1899, 1977 |
| BmrFI | CCNGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| BmsI | GCATC | 6 cut(s) | 590, 641, 1196, 1495, 2287, 2384 |
| BpiI | GAAGAC | 1 cut(s) | 1637 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 134, 166, 257, 289, 1748, 1780 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1245 |
| BpuEI | CTTGAG | 1 cut(s) | 1383 |
| BsaAI | YACGTR | 2 cut(s) | 2183, 2279 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1524 |
| BsaJI | CCNNGG | 1 cut(s) | 1127 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 59, 1246, 1437, 1438, 1753, 1962, 2043 |
| Bse1I | ACTGG | 2 cut(s) | 125, 2345 |
| Bse3DI | GCAATG | 1 cut(s) | 1543 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1524 |
| BseBI | CCWGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| BseDI | CCNNGG | 1 cut(s) | 1127 |
| BseGI | GGATG | 5 cut(s) | 387, 497, 1187, 1510, 2302 |
| BseJI | GATNNNNATC | 1 cut(s) | 1524 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 59, 1246, 1437, 1438, 1753, 1962, 2043 |
| BseMI | GCAATG | 1 cut(s) | 1543 |
| BseMII | CTCAG | 7 cut(s) | 168, 281, 534, 547, 1259, 1450, 1973 |
| BseNI | ACTGG | 2 cut(s) | 125, 2345 |
| BseRI | GAGGAG | 7 cut(s) | 88, 211, 772, 775, 1662, 1978, 1985 |
| BseYI | CCCAGC | 1 cut(s) | 1822 |
| BsgI | GTGCAG | 1 cut(s) | 1060 |
| BshFI | GGCC | 2 cut(s) | 958, 1235 |
| BsiHKAI | GWGCWC | 2 cut(s) | 411, 2053 |
| BsiHKCI | CYCGRG | 4 cut(s) | 299, 374, 419, 1211 |
| BsiSI | CCGG | 2 cut(s) | 248, 959 |
| BslFI | GGGAC | 3 cut(s) | 604, 765, 1736 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 59, 1246, 1437, 1438, 1753, 1962, 2043 |
| BsmAI | GTCTC | 1 cut(s) | 573 |
| BsmBI | CGTCTC | 1 cut(s) | 573 |
| BsmFI | GGGAC | 3 cut(s) | 604, 765, 1736 |
| BsnI | GGCC | 2 cut(s) | 958, 1235 |
| BsoBI | CYCGRG | 4 cut(s) | 299, 374, 419, 1211 |
| Bsp1286I | GDGCHC | 3 cut(s) | 272, 411, 2053 |
| Bsp1407I | TGTACA | 1 cut(s) | 1768 |
| BspACI | CCGC | 2 cut(s) | 1875, 2082 |
| BspANI | GGCC | 2 cut(s) | 958, 1235 |
| BspCNI | CTCAG | 7 cut(s) | 169, 282, 535, 546, 1258, 1449, 1972 |
| BspHI | TCATGA | 1 cut(s) | 1564 |
| BspLI | GGNNCC | 7 cut(s) | 780, 781, 1234, 1671, 1724, 1899, 1977 |
| BspMAI | CTGCAG | 7 cut(s) | 109, 232, 358, 475, 577, 628, 2191 |
| BspPI | GGATC | 9 cut(s) | 12, 139, 505, 1514, 1787, 1892, 1905, 1993, 2027 |
| BspTI | CTTAAG | 1 cut(s) | 1160 |
| BsrDI | GCAATG | 1 cut(s) | 1543 |
| BsrGI | TGTACA | 1 cut(s) | 1768 |
| BsrI | ACTGG | 2 cut(s) | 125, 2345 |
| BssECI | CCNNGG | 1 cut(s) | 1127 |
| BssSI | CACGAG | 1 cut(s) | 1602 |
| Bst2BI | CACGAG | 1 cut(s) | 1602 |
| Bst2UI | CCWGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| Bst4CI | ACNGT | 7 cut(s) | 432, 710, 1111, 1357, 1783, 1834, 2239 |
| Bst6I | CTCTTC | 6 cut(s) | 157, 280, 400, 523, 749, 1198 |
| BstAFI | CTTAAG | 1 cut(s) | 1160 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 1868, 2090, 2186, 2231, 2282 |
| BstAUI | TGTACA | 1 cut(s) | 1768 |
| BstBAI | YACGTR | 2 cut(s) | 2183, 2279 |
| BstC8I | GCNNGC | 2 cut(s) | 1581, 2191 |
| BstDEI | CTNAG | 9 cut(s) | 167, 177, 290, 533, 543, 1245, 1436, 1959, 1993 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 57 |
| BstF5I | GGATG | 5 cut(s) | 387, 497, 1187, 1510, 2302 |
| BstMAI | GTCTC | 1 cut(s) | 573 |
| BstNI | CCWGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| BstNSI | RCATGY | 4 cut(s) | 1514, 1583, 2090, 2231 |
| BstSCI | CCNGG | 4 cut(s) | 1126, 1541, 2019, 2313 |
| BstV2I | GAAGAC | 1 cut(s) | 1637 |
| BstX2I | RGATCY | 5 cut(s) | 144, 510, 1519, 1897, 1985 |
| BstYI | RGATCY | 5 cut(s) | 144, 510, 1519, 1897, 1985 |
| BsuRI | GGCC | 2 cut(s) | 958, 1235 |
| BtgZI | GCGATG | 2 cut(s) | 2163, 2208 |
| BtrI | CACGTC | 1 cut(s) | 2138 |
| BtsCI | GGATG | 5 cut(s) | 387, 497, 1187, 1510, 2302 |
| BtsI | GCAGTG | 1 cut(s) | 1048 |
| BtsIMutI | CAGTG | 4 cut(s) | 132, 1048, 1098, 1107 |
| Cac8I | GCNNGC | 2 cut(s) | 1581, 2191 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1871 |
| CciI | TCATGA | 1 cut(s) | 1564 |
| Cfr13I | GGNCC | 5 cut(s) | 779, 956, 1233, 1723, 1942 |
| CsiI | ACCWGGT | 2 cut(s) | 2019, 2313 |
| DdeI | CTNAG | 9 cut(s) | 167, 177, 290, 533, 543, 1245, 1436, 1959, 1993 |
| Eam1104I | CTCTTC | 6 cut(s) | 157, 280, 400, 523, 749, 1198 |
| EarI | CTCTTC | 6 cut(s) | 157, 280, 400, 523, 749, 1198 |
| Eco24I | GRGCYC | 1 cut(s) | 272 |
| Eco47I | GGWCC | 3 cut(s) | 779, 1723, 1942 |
| Eco57I | CTGAAG | 3 cut(s) | 423, 1179, 2349 |
| Eco72I | CACGTG | 2 cut(s) | 2183, 2279 |
| Eco88I | CYCGRG | 4 cut(s) | 299, 374, 419, 1211 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 57 |
| EcoO109I | RGGNCCY | 2 cut(s) | 779, 1233 |
| EcoRII | CCWGG | 4 cut(s) | 1126, 1541, 2019, 2313 |
| EcoT22I | ATGCAT | 1 cut(s) | 2365 |
| EcoT38I | GRGCYC | 1 cut(s) | 272 |
| Esp3I | CGTCTC | 1 cut(s) | 573 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1260, 1292, 1885, 1917 |
| FaqI | GGGAC | 3 cut(s) | 604, 765, 1736 |
| FbaI | TGATCA | 1 cut(s) | 2056 |
| FokI | GGATG | 5 cut(s) | 374, 484, 1174, 1517, 2309 |
| FriOI | GRGCYC | 1 cut(s) | 272 |
| FspBI | CTAG | 5 cut(s) | 642, 732, 1515, 1842, 2392 |
| GsaI | CCCAGC | 1 cut(s) | 1826 |
| HaeIII | GGCC | 2 cut(s) | 958, 1235 |
| HapII | CCGG | 2 cut(s) | 248, 959 |
| HindIII | AAGCTT | 7 cut(s) | 1016, 1136, 1163, 1221, 2122, 2167, 2263 |
| HpaII | CCGG | 2 cut(s) | 248, 959 |
| HphI | GGTGA | 3 cut(s) | 832, 2255, 2329 |
| Hpy166II | GTNNAC | 5 cut(s) | 296, 539, 910, 1180, 2342 |
| Hpy8I | GTNNAC | 5 cut(s) | 296, 539, 910, 1180, 2342 |
| HpyAV | CCTTC | 7 cut(s) | 53, 661, 811, 1246, 1286, 1297, 1797 |
| HpyCH4III | ACNGT | 7 cut(s) | 432, 710, 1111, 1357, 1783, 1834, 2239 |
| HpyCH4IV | ACGT | 7 cut(s) | 528, 949, 997, 1426, 2137, 2182, 2278 |
| HpyF3I | CTNAG | 9 cut(s) | 167, 177, 290, 533, 543, 1245, 1436, 1959, 1993 |
| HpySE526I | ACGT | 7 cut(s) | 528, 949, 997, 1426, 2137, 2182, 2278 |
| KflI | GGGWCCC | 1 cut(s) | 779 |
| Ksp22I | TGATCA | 1 cut(s) | 2056 |
| LmnI | GCTCC | 3 cut(s) | 1573, 1675, 2311 |
| LweI | GCATC | 6 cut(s) | 590, 641, 1196, 1495, 2287, 2384 |
| MabI | ACCWGGT | 2 cut(s) | 2019, 2313 |
| MaeI | CTAG | 5 cut(s) | 642, 732, 1515, 1842, 2392 |
| MaeII | ACGT | 7 cut(s) | 528, 949, 997, 1426, 2137, 2182, 2278 |
| MaeIII | GTNAC | 2 cut(s) | 1910, 2317 |
| MflI | RGATCY | 5 cut(s) | 144, 510, 1519, 1897, 1985 |
| MhlI | GDGCHC | 3 cut(s) | 272, 411, 2053 |
| MluCI | AATT | 2 cut(s) | 503, 1595 |
| MlyI | GAGTC | 7 cut(s) | 58, 212, 260, 338, 386, 503, 554 |
| MmeI | TCCRAC | 1 cut(s) | 1414 |
| Mph1103I | ATGCAT | 1 cut(s) | 2365 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1337, 1782 |
| MseI | TTAA | 6 cut(s) | 506, 747, 1028, 1122, 1161, 1205 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1503 |
| MspA1I | CMGCKG | 4 cut(s) | 551, 1691, 1868, 1877 |
| MspCI | CTTAAG | 1 cut(s) | 1160 |
| MspI | CCGG | 2 cut(s) | 248, 959 |
| MspR9I | CCNGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| MvaI | CCWGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| NlaIV | GGNNCC | 7 cut(s) | 780, 781, 1234, 1671, 1724, 1899, 1977 |
| NmeAIII | GCCGAG | 3 cut(s) | 2156, 2201, 2252 |
| NmuCI | GTSAC | 1 cut(s) | 2317 |
| NsiI | ATGCAT | 1 cut(s) | 2365 |
| NspI | RCATGY | 4 cut(s) | 1514, 1583, 2090, 2231 |
| PaeI | GCATGC | 1 cut(s) | 1583 |
| PaeR7I | CTCGAG | 1 cut(s) | 1211 |
| PagI | TCATGA | 1 cut(s) | 1564 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1337, 1782 |
| PfeI | GAWTC | 3 cut(s) | 77, 596, 2012 |
| PleI | GAGTC | 7 cut(s) | 57, 211, 259, 337, 385, 502, 553 |
| PmaCI | CACGTG | 2 cut(s) | 2183, 2279 |
| PmlI | CACGTG | 2 cut(s) | 2183, 2279 |
| PpsI | GAGTC | 7 cut(s) | 57, 211, 259, 337, 385, 502, 553 |
| Ppu21I | YACGTR | 2 cut(s) | 2183, 2279 |
| PpuMI | RGGWCCY | 1 cut(s) | 779 |
| Psp5II | RGGWCCY | 1 cut(s) | 779 |
| Psp6I | CCWGG | 4 cut(s) | 1126, 1541, 2019, 2313 |
| PspCI | CACGTG | 2 cut(s) | 2183, 2279 |
| PspFI | CCCAGC | 1 cut(s) | 1822 |
| PspGI | CCWGG | 4 cut(s) | 1126, 1541, 2019, 2313 |
| PspN4I | GGNNCC | 7 cut(s) | 780, 781, 1234, 1671, 1724, 1899, 1977 |
| PspPI | GGNCC | 5 cut(s) | 779, 956, 1233, 1723, 1942 |
| PspPPI | RGGWCCY | 1 cut(s) | 779 |
| PspXI | VCTCGAGB | 1 cut(s) | 1211 |
| PstI | CTGCAG | 7 cut(s) | 109, 232, 358, 475, 577, 628, 2191 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1871 |
| PsuI | RGATCY | 5 cut(s) | 144, 510, 1519, 1897, 1985 |
| PvuII | CAGCTG | 3 cut(s) | 551, 1691, 1868 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1503 |
| SaqAI | TTAA | 6 cut(s) | 506, 747, 1028, 1122, 1161, 1205 |
| Sau96I | GGNCC | 5 cut(s) | 779, 956, 1233, 1723, 1942 |
| SchI | GAGTC | 7 cut(s) | 58, 212, 260, 338, 386, 503, 554 |
| ScrFI | CCNGG | 4 cut(s) | 1128, 1543, 2021, 2315 |
| SduI | GDGCHC | 3 cut(s) | 272, 411, 2053 |
| SexAI | ACCWGGT | 2 cut(s) | 2019, 2313 |
| SfaNI | GCATC | 6 cut(s) | 590, 641, 1196, 1495, 2287, 2384 |
| Sfr274I | CTCGAG | 1 cut(s) | 1211 |
| SinI | GGWCC | 3 cut(s) | 779, 1723, 1942 |
| SlaI | CTCGAG | 1 cut(s) | 1211 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1503 |
| SmlI | CTYRAG | 3 cut(s) | 1160, 1211, 1398 |
| SmoI | CTYRAG | 3 cut(s) | 1160, 1211, 1398 |
| SpeI | ACTAGT | 1 cut(s) | 731 |
| SphI | GCATGC | 1 cut(s) | 1583 |
| Sse9I | AATT | 2 cut(s) | 503, 1595 |
| SsiI | CCGC | 2 cut(s) | 1875, 2082 |
| SspI | AATATT | 2 cut(s) | 319, 1032 |
| SspMI | CTAG | 5 cut(s) | 642, 732, 1515, 1842, 2392 |
| StyD4I | CCNGG | 4 cut(s) | 1126, 1541, 2019, 2313 |
| TaaI | ACNGT | 7 cut(s) | 432, 710, 1111, 1357, 1783, 1834, 2239 |
| TaiI | ACGT | 7 cut(s) | 531, 952, 1000, 1429, 2140, 2185, 2281 |
| TaqI | TCGA | 5 cut(s) | 599, 1212, 1360, 1633, 1774 |
| TasI | AATT | 2 cut(s) | 503, 1595 |
| TatI | WGTACW | 5 cut(s) | 170, 293, 536, 1768, 2076 |
| TauI | GCSGC | 1 cut(s) | 1877 |
| TfiI | GAWTC | 3 cut(s) | 77, 596, 2012 |
| Tru1I | TTAA | 6 cut(s) | 506, 747, 1028, 1122, 1161, 1205 |
| Tru9I | TTAA | 6 cut(s) | 506, 747, 1028, 1122, 1161, 1205 |
| TscAI | CASTG | 4 cut(s) | 132, 1048, 1098, 1114 |
| TseFI | GTSAC | 1 cut(s) | 2317 |
| Tsp45I | GTSAC | 1 cut(s) | 2317 |
| TspGWI | ACGGA | 1 cut(s) | 1188 |
| TspRI | CASTG | 4 cut(s) | 132, 1048, 1098, 1114 |
| Vha464I | CTTAAG | 1 cut(s) | 1160 |
| VpaK11BI | GGWCC | 3 cut(s) | 779, 1723, 1942 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 57 |
| XapI | RAATTY | 1 cut(s) | 1595 |
| XceI | RCATGY | 4 cut(s) | 1514, 1583, 2090, 2231 |
| XhoI | CTCGAG | 1 cut(s) | 1211 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1337, 1782 |
| XspI | CTAG | 5 cut(s) | 642, 732, 1515, 1842, 2392 |
| Zsp2I | ATGCAT | 1 cut(s) | 2365 |