Prupe.2G204200_v2.0.a1

Belongs to the peptidase M10A family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019772
Physical Location & Seq
Reverse (-)
23958848 .. 23959795
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G204200.1

Sequence Viewer

Length: 948 bp
ATGCCTGCAATGGCCTCAAAAACCATCTCAGTTTGTGTAGCCTTTTTCCTCATCTTTGTGTTGCTCTCTCAAAACACTCATTCCAAATCTACTCATGACCAGCATGACCCCTTCAAGTTCATCCAACACCTGGAGGGATGCCACAAGGGTCAAAATGTGAGCGGGCTGCAAGAGCTCAAAAAATACCTCACCAAATTTGGCTACCTGAATTATGATCATTCAAAGCATGCCAACGACGAGGAGTTTGATGACATTCTAGAGTCTGCCATCAAGTCATACCAGAAAAGCTATCACTTAAAAGTCACTGGAACTCTAGACACCACCACGGGGAAACAGATGATGATGCCAAGATGTGGTGTGCCGGATGTTGTCAATGGCACTCGAAAGGGCAGCAAGAAACACAACCATAAGCACAAGTCTATCCATGGGGTTGCTCATTATGAGTTCTTCCCCGGACCGCGAAGATGGTCCAAAACCCATCTGACGTATCGCTTTAGTTCAAGTGTGAACCAAGTCCCTGGCACACAGAATGTAAGGTCTATATGTGCACAAGCATTTCAGAGATGGGCACAAGTGACCAGTTTTACATTTGAGGAAGTCCCTGCTACTTCAGCAGCTGATATTACCATTGGATTTCACAGGGGCAACCATGGAGATGGACCTGGTAACGCATTCGATGGCCCCAGAGGGACATTGGCGCACGCTAACCCGCCTAGAGGTGGGAATTTCCATTATGATGCAGATGAGAGATGGAGTAGCAATCCAGGACCGAATGAGGTAGACTTGGAATCTGTCACCGTGCACGAAATAGGCCATCTGCTGGGGCTTAATCACAATCCTGACCTCCCGGACGCAATCATGTATCCCTACTTCGATCATGGGATTATAAAACGGGATCTACATAGGGATGACATTGATGGCATACGTGCTTTGTATGGTTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PG_binding_1 Peptidase_M10

Protein Analysis

316

Amino Acids

35.37

Weight (kDa)

7.39

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019772)

Species Orthologous Gene IDs
malus_domestica MD01G1098700.v1.1 MD07G1165400.v1.1
prunus_persica Prupe.2G204200_v2.0.a1 Prupe.2G204300_v2.0.a1 Prupe.2G204500_v2.0.a1
pyrus_communis pycom01g12590 pycom07g16090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AccB7I CCANNNNNTGG 3 cut(s) 130, 353, 820
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 780
AccII CGCG 1 cut(s) 460
AciI CCGC 3 cut(s) 162, 458, 710
AclWI GGATC 1 cut(s) 903
AcsI RAATTY 2 cut(s) 194, 724
AcuI CTGAAG 1 cut(s) 594
AfiI CCNNNNNNNGG 6 cut(s) 130, 327, 353, 716, 719, 820
AgsI TTSAA 3 cut(s) 115, 222, 501
AjnI CCWGG 4 cut(s) 129, 517, 661, 763
AluBI AGCT 3 cut(s) 175, 288, 617
AluI AGCT 3 cut(s) 175, 288, 617
Alw21I GWGCWC 3 cut(s) 177, 550, 804
Alw44I GTGCAC 2 cut(s) 546, 800
AlwI GGATC 1 cut(s) 903
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 3 cut(s) 12, 679, 811
ApaLI GTGCAC 2 cut(s) 546, 800
ApeKI GCWGC 3 cut(s) 166, 390, 614
ApoI RAATTY 2 cut(s) 194, 724
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 5 cut(s) 455, 468, 659, 680, 767
AsuC2I CCSGG 2 cut(s) 453, 848
AsuHPI GGTGA 2 cut(s) 181, 787
AvaII GGWCC 4 cut(s) 455, 468, 659, 767
BaeGI GKGCMC 3 cut(s) 550, 571, 804
BanII GRGCYC 1 cut(s) 177
BarI GAAGNNNNNNTAC 2 cut(s) 854, 886
Bbv12I GWGCWC 3 cut(s) 177, 550, 804
BbvI GCAGC 3 cut(s) 153, 402, 626
BciT130I CCWGG 4 cut(s) 131, 519, 663, 765
BciVI GTATCC 1 cut(s) 873
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 2 cut(s) 453, 848
BfaI CTAG 3 cut(s) 257, 314, 714
BfuI GTATCC 1 cut(s) 873
BisI GCNGC 3 cut(s) 167, 391, 615
BlsI GCNGC 3 cut(s) 168, 392, 616
Bme1390I CCNGG 6 cut(s) 131, 453, 519, 663, 765, 848
Bme18I GGWCC 4 cut(s) 455, 468, 659, 767
BmgT120I GGNCC 5 cut(s) 455, 468, 659, 680, 767
BmiI GGNNCC 1 cut(s) 682
BmrFI CCNGG 6 cut(s) 131, 453, 519, 663, 765, 848
BmsI GCATC 3 cut(s) 128, 333, 727
BpmI CTGGAG 1 cut(s) 152
BpuMI CCSGG 2 cut(s) 453, 848
BsaAI YACGTR 1 cut(s) 926
BsaJI CCNNGG 5 cut(s) 324, 424, 451, 517, 649
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 327, 353, 716, 719, 820
Bse1I ACTGG 2 cut(s) 310, 579
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 4 cut(s) 131, 519, 663, 765
BseDI CCNNGG 5 cut(s) 324, 424, 451, 517, 649
BseGI GGATG 4 cut(s) 120, 143, 370, 913
BseLI CCNNNNNNNGG 6 cut(s) 130, 327, 353, 716, 719, 820
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 310, 579
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 3 cut(s) 550, 571, 804
BseXI GCAGC 3 cut(s) 153, 402, 626
BseYI CCCAGC 1 cut(s) 820
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 3 cut(s) 14, 681, 813
BsiHKAI GWGCWC 3 cut(s) 177, 550, 804
BsiSI CCGG 3 cut(s) 362, 453, 848
BslFI GGGAC 3 cut(s) 500, 584, 703
BslI CCNNNNNNNGG 6 cut(s) 130, 327, 353, 716, 719, 820
BsmFI GGGAC 3 cut(s) 500, 584, 703
BsmI GAATGC 1 cut(s) 671
BsnI GGCC 3 cut(s) 14, 681, 813
Bsp1286I GDGCHC 4 cut(s) 177, 550, 571, 804
Bsp143I GATC 3 cut(s) 214, 874, 895
Bsp19I CCATGG 2 cut(s) 424, 649
BspACI CCGC 3 cut(s) 162, 458, 710
BspANI GGCC 3 cut(s) 14, 681, 813
BspCNI CTCAG 1 cut(s) 41
BspFNI CGCG 1 cut(s) 460
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 682
BspPI GGATC 1 cut(s) 903
BsrBI CCGCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 2 cut(s) 310, 579
BssECI CCNNGG 5 cut(s) 324, 424, 451, 517, 649
BssMI GATC 3 cut(s) 214, 874, 895
BssT1I CCWWGG 2 cut(s) 424, 649
Bst2UI CCWGG 4 cut(s) 131, 519, 663, 765
Bst4CI ACNGT 2 cut(s) 799, 945
BstBAI YACGTR 1 cut(s) 926
BstC8I GCNNGC 4 cut(s) 6, 164, 228, 702
BstDEI CTNAG 1 cut(s) 28
BstDSI CCRYGG 3 cut(s) 324, 424, 649
BstF5I GGATG 4 cut(s) 120, 143, 370, 913
BstFNI CGCG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 3 cut(s) 217, 877, 898
BstMBI GATC 3 cut(s) 214, 874, 895
BstMWI GCNNNNNNNGC 2 cut(s) 172, 611
BstNI CCWGG 4 cut(s) 131, 519, 663, 765
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 6 cut(s) 129, 451, 517, 661, 763, 846
BstSLI GKGCMC 3 cut(s) 550, 571, 804
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 3 cut(s) 153, 402, 626
BstX2I RGATCY 1 cut(s) 895
BstXI CCANNNNNNTGG 2 cut(s) 518, 656
BstYI RGATCY 1 cut(s) 895
BsuI GTATCC 1 cut(s) 873
BsuRI GGCC 3 cut(s) 14, 681, 813
BtgI CCRYGG 3 cut(s) 324, 424, 649
BtsCI GGATG 4 cut(s) 120, 143, 370, 913
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 4 cut(s) 6, 164, 228, 702
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 700
Cfr13I GGNCC 5 cut(s) 455, 468, 659, 680, 767
CpoI CGGWCCG 1 cut(s) 455
CseI GACGC 1 cut(s) 860
CsiI ACCWGGT 1 cut(s) 661
CspI CGGWCCG 1 cut(s) 455
CviAII CATG 7 cut(s) 95, 104, 227, 425, 650, 859, 878
DdeI CTNAG 1 cut(s) 28
DpnI GATC 3 cut(s) 216, 876, 897
DpnII GATC 3 cut(s) 214, 874, 895
Ecl136II GAGCTC 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 424, 649
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 4 cut(s) 455, 468, 659, 767
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 175
EcoRII CCWGG 4 cut(s) 129, 517, 661, 763
EcoT14I CCWWGG 2 cut(s) 424, 649
EcoT38I GRGCYC 1 cut(s) 177
ErhI CCWWGG 2 cut(s) 424, 649
FaeI CATG 7 cut(s) 98, 107, 230, 428, 653, 862, 881
FaqI GGGAC 3 cut(s) 500, 584, 703
FatI CATG 7 cut(s) 94, 103, 226, 424, 649, 858, 877
FauI CCCGC 2 cut(s) 155, 717
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 167, 391, 615
FokI GGATG 4 cut(s) 107, 150, 377, 920
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 167, 391, 615
FspBI CTAG 3 cut(s) 257, 314, 714
GlaI GCGC 1 cut(s) 699
GluI GCNGC 3 cut(s) 167, 391, 615
GsaI CCCAGC 1 cut(s) 824
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 3 cut(s) 14, 681, 813
HapII CCGG 3 cut(s) 362, 453, 848
HgaI GACGC 1 cut(s) 860
HhaI GCGC 1 cut(s) 700
Hin1II CATG 7 cut(s) 98, 107, 230, 428, 653, 862, 881
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HinfI GANTC 2 cut(s) 260, 788
HpaII CCGG 3 cut(s) 362, 453, 848
HphI GGTGA 2 cut(s) 181, 787
Hpy166II GTNNAC 5 cut(s) 508, 548, 781, 802, 941
Hpy188I TCNGA 2 cut(s) 483, 561
Hpy188III TCNNGA 4 cut(s) 95, 257, 314, 839
Hpy8I GTNNAC 5 cut(s) 508, 548, 781, 802, 941
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 2 cut(s) 799, 945
HpyCH4IV ACGT 2 cut(s) 485, 925
HpyCH4V TGCA 5 cut(s) 8, 169, 548, 740, 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 611
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 2 cut(s) 485, 925
Hsp92II CATG 7 cut(s) 98, 107, 230, 428, 653, 862, 881
HspAI GCGC 1 cut(s) 698
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 3 cut(s) 214, 874, 895
Lsp1109I GCAGC 3 cut(s) 153, 402, 626
LweI GCATC 3 cut(s) 128, 333, 727
MabI ACCWGGT 1 cut(s) 661
MaeI CTAG 3 cut(s) 257, 314, 714
MaeII ACGT 2 cut(s) 485, 925
MaeIII GTNAC 4 cut(s) 301, 574, 665, 793
MalI GATC 3 cut(s) 216, 876, 897
MbiI CCGCTC 1 cut(s) 162
MboI GATC 3 cut(s) 214, 874, 895
MboII GAAGA 2 cut(s) 439, 474
MflI RGATCY 1 cut(s) 895
MhlI GDGCHC 4 cut(s) 177, 550, 571, 804
MluCI AATT 3 cut(s) 194, 208, 724
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 148
MseI TTAA 2 cut(s) 296, 828
MslI CAYNNNNRTG 4 cut(s) 56, 654, 735, 906
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 3 cut(s) 362, 453, 848
MspR9I CCNGG 6 cut(s) 131, 453, 519, 663, 765, 848
Mva1269I GAATGC 1 cut(s) 671
MvaI CCWGG 4 cut(s) 131, 519, 663, 765
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 2 cut(s) 172, 611
NciI CCSGG 2 cut(s) 453, 848
NcoI CCATGG 2 cut(s) 424, 649
NdeII GATC 3 cut(s) 214, 874, 895
NlaIII CATG 7 cut(s) 98, 107, 230, 428, 653, 862, 881
NlaIV GGNNCC 1 cut(s) 682
NmuCI GTSAC 3 cut(s) 301, 574, 793
NspI RCATGY 1 cut(s) 230
PaeI GCATGC 1 cut(s) 230
PagI TCATGA 1 cut(s) 94
PctI GAATGC 1 cut(s) 671
PfeI GAWTC 1 cut(s) 788
PflMI CCANNNNNTGG 3 cut(s) 130, 353, 820
PfoI TCCNGGA 2 cut(s) 763, 846
PkrI GCNGC 3 cut(s) 168, 392, 616
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 926
PsiI TTATAA 1 cut(s) 887
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 4 cut(s) 129, 517, 661, 763
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 4 cut(s) 129, 517, 661, 763
PspN4I GGNNCC 1 cut(s) 682
PspPI GGNCC 5 cut(s) 455, 468, 659, 680, 767
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 895
PvuII CAGCTG 1 cut(s) 617
RseI CAYNNNNRTG 4 cut(s) 56, 654, 735, 906
Rsr2I CGGWCCG 1 cut(s) 455
RsrII CGGWCCG 1 cut(s) 455
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 296, 828
SatI GCNGC 3 cut(s) 167, 391, 615
Sau3AI GATC 3 cut(s) 214, 874, 895
Sau96I GGNCC 5 cut(s) 455, 468, 659, 680, 767
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 6 cut(s) 131, 453, 519, 663, 765, 848
SduI GDGCHC 4 cut(s) 177, 550, 571, 804
SexAI ACCWGGT 1 cut(s) 661
SfaNI GCATC 3 cut(s) 128, 333, 727
SinI GGWCC 4 cut(s) 455, 468, 659, 767
SmiMI CAYNNNNRTG 4 cut(s) 56, 654, 735, 906
SphI GCATGC 1 cut(s) 230
Sse9I AATT 3 cut(s) 194, 208, 724
SsiI CCGC 3 cut(s) 162, 458, 710
SspMI CTAG 3 cut(s) 257, 314, 714
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 6 cut(s) 129, 451, 517, 661, 763, 846
StyI CCWWGG 2 cut(s) 424, 649
TaaI ACNGT 2 cut(s) 799, 945
TaiI ACGT 2 cut(s) 488, 928
TaqI TCGA 3 cut(s) 382, 675, 873
TaqII GACCGA 1 cut(s) 784
TasI AATT 3 cut(s) 194, 208, 724
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 2 cut(s) 296, 828
Tru9I TTAA 2 cut(s) 296, 828
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 3 cut(s) 301, 574, 793
TseI GCWGC 3 cut(s) 166, 390, 614
Tsp45I GTSAC 3 cut(s) 301, 574, 793
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 3 cut(s) 130, 353, 820
VneI GTGCAC 2 cut(s) 546, 800
VpaK11BI GGWCC 4 cut(s) 455, 468, 659, 767
XapI RAATTY 2 cut(s) 194, 724
XbaI TCTAGA 2 cut(s) 256, 313
XceI RCATGY 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XmiI GTMKAC 1 cut(s) 780
XspI CTAG 3 cut(s) 257, 314, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.