Regulator of nonsense transcripts
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39260 |
| fragaria_vesca | FvH4_4g12630 FvH4_4g12630 FvH4_4g12630 |
| malus_domestica | MD01G1113500.v1.1 MD07G1181100.v1.1 |
| prunus_persica | Prupe.2G220200_v2.0.a1 Prupe.2G220200_v2.0.a1 Prupe.2G220200_v2.0.a1 Prupe.2G220200_v2.0.a1 |
| pyrus_communis | pycom01g14190 pycom07g17420 |
| rosa_chinensis | RchiOBHm_Chr3g0482831 |
| rosa_laevigata | RLG00000023326 |
| rosa_multiflora | Rmu_sc0006601.1_g000011 Rmu_ssc0000175.1_g000030 |
| rosa_roxburghii | Rroxscaffold_6G00398900 |
| rosa_rugosa | Rorug03G0199200 Rorug03G0199300 |
| rosa_samantha | Rh3AG250100 Rh3BG286200 Rh3CG284100 Rh3DG279700 |
| rosa_wichuraiana | Rw3G022690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3205 |
| Acc36I | ACCTGC | 3 cut(s) | 2950, 3094, 3205 |
| AccB1I | GGYRCC | 1 cut(s) | 2843 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 677, 977, 1028 |
| AccI | GTMKAC | 1 cut(s) | 2057 |
| AccIII | TCCGGA | 1 cut(s) | 1333 |
| AcoI | YGGCCR | 4 cut(s) | 2158, 2392, 2479, 3445 |
| AcuI | CTGAAG | 2 cut(s) | 236, 727 |
| AfaI | GTAC | 8 cut(s) | 917, 1047, 2418, 2565, 2689, 2782, 3266, 3298 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 16, 30, 31, 155, 677, 977, 1028 |
| AflIII | ACRYGT | 2 cut(s) | 1878, 3491 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2190 |
| AhlI | ACTAGT | 2 cut(s) | 998, 3470 |
| AjiI | CACGTC | 2 cut(s) | 457, 3494 |
| AjnI | CCWGG | 2 cut(s) | 1429, 1535 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 491, 523 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1625, 1657 |
| Alw21I | GWGCWC | 3 cut(s) | 825, 861, 2076 |
| Alw26I | GTCTC | 9 cut(s) | 880, 931, 1817, 1854, 2360, 2465, 2698, 2802, 3196 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1028 |
| Ama87I | CYCGRG | 1 cut(s) | 3273 |
| Aor13HI | TCCGGA | 1 cut(s) | 1333 |
| AseI | ATTAAT | 3 cut(s) | 225, 1656, 1892 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 422, 740, 786 |
| AspLEI | GCGC | 1 cut(s) | 192 |
| AspS9I | GGNCC | 5 cut(s) | 474, 680, 709, 2751, 2939 |
| AsuC2I | CCSGG | 1 cut(s) | 432 |
| AsuHPI | GGTGA | 4 cut(s) | 47, 2114, 2909, 3229 |
| AvaI | CYCGRG | 1 cut(s) | 3273 |
| AvaII | GGWCC | 2 cut(s) | 2751, 2939 |
| AxyI | CCTNAGG | 2 cut(s) | 470, 3000 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 899, 932 |
| BalI | TGGCCA | 3 cut(s) | 2160, 2394, 2481 |
| BamHI | GGATCC | 2 cut(s) | 2422, 2995 |
| BanI | GGYRCC | 1 cut(s) | 2843 |
| BanII | GRGCYC | 2 cut(s) | 861, 1194 |
| BauI | CACGAG | 1 cut(s) | 1986 |
| Bbv12I | GWGCWC | 3 cut(s) | 825, 861, 2076 |
| BceAI | ACGGC | 2 cut(s) | 1428, 3432 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2636, 2670 |
| BciT130I | CCWGG | 2 cut(s) | 1431, 1537 |
| BciVI | GTATCC | 1 cut(s) | 595 |
| BclI | TGATCA | 3 cut(s) | 1156, 1456, 2209 |
| BcnI | CCSGG | 1 cut(s) | 432 |
| BcoDI | GTCTC | 9 cut(s) | 880, 931, 1817, 1854, 2360, 2465, 2698, 2802, 3196 |
| BcuI | ACTAGT | 2 cut(s) | 998, 3470 |
| BfaI | CTAG | 9 cut(s) | 180, 633, 990, 999, 2264, 2663, 3023, 3068, 3471 |
| BfmI | CTRYAG | 5 cut(s) | 774, 1224, 1248, 1418, 1467 |
| BfuAI | ACCTGC | 3 cut(s) | 2950, 3094, 3205 |
| BfuI | GTATCC | 1 cut(s) | 595 |
| BglII | AGATCT | 5 cut(s) | 354, 1102, 1979, 2044, 3025 |
| BmcAI | AGTACT | 1 cut(s) | 2565 |
| Bme1390I | CCNGG | 3 cut(s) | 432, 1431, 1537 |
| Bme18I | GGWCC | 2 cut(s) | 2751, 2939 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2190 |
| BmeT110I | CYCGRG | 1 cut(s) | 3273 |
| BmgBI | CACGTC | 2 cut(s) | 457, 3494 |
| BmgT120I | GGNCC | 5 cut(s) | 474, 680, 709, 2751, 2939 |
| BmiI | GGNNCC | 5 cut(s) | 2424, 2845, 2997, 3127, 3401 |
| BmrFI | CCNGG | 3 cut(s) | 432, 1431, 1537 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1212 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2708, 2740 |
| BpmI | CTGGAG | 5 cut(s) | 945, 1005, 1257, 2489, 3216 |
| Bpu10I | CCTNAGC | 1 cut(s) | 275 |
| BpuEI | CTTGAG | 4 cut(s) | 280, 1158, 1841, 2693 |
| BpuMI | CCSGG | 1 cut(s) | 432 |
| Bsa29I | ATCGAT | 1 cut(s) | 2521 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2635, 3266 |
| BsaI | GGTCTC | 3 cut(s) | 1854, 2465, 2802 |
| BsaJI | CCNNGG | 8 cut(s) | 1535, 1925, 2096, 2395, 2494, 2812, 3272, 3448 |
| BsaWI | WCCGGW | 1 cut(s) | 1333 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 16, 30, 31, 155, 677, 977, 1028 |
| Bse1I | ACTGG | 5 cut(s) | 177, 576, 962, 2424, 2577 |
| Bse21I | CCTNAGG | 2 cut(s) | 470, 3000 |
| Bse3DI | GCAATG | 4 cut(s) | 928, 1159, 1632, 2009 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2635, 3266 |
| BseAI | TCCGGA | 1 cut(s) | 1333 |
| BseBI | CCWGG | 2 cut(s) | 1431, 1537 |
| BseCI | ATCGAT | 1 cut(s) | 2521 |
| BseDI | CCNNGG | 8 cut(s) | 1535, 1925, 2096, 2395, 2494, 2812, 3272, 3448 |
| BseJI | GATNNNNATC | 2 cut(s) | 2635, 3266 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 16, 30, 31, 155, 677, 977, 1028 |
| BseMI | GCAATG | 4 cut(s) | 928, 1159, 1632, 2009 |
| BseNI | ACTGG | 5 cut(s) | 177, 576, 962, 2424, 2577 |
| BseRI | GAGGAG | 6 cut(s) | 29, 2261, 2690, 2933, 3392, 3395 |
| BseYI | CCCAGC | 1 cut(s) | 29 |
| BsgI | GTGCAG | 2 cut(s) | 1968, 3233 |
| BshNI | GGYRCC | 1 cut(s) | 2843 |
| BshVI | ATCGAT | 1 cut(s) | 2521 |
| BsiHKAI | GWGCWC | 3 cut(s) | 825, 861, 2076 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3273 |
| BsiSI | CCGG | 4 cut(s) | 432, 1121, 1334, 3538 |
| BslFI | GGGAC | 2 cut(s) | 1411, 1517 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 16, 30, 31, 155, 677, 977, 1028 |
| BsmAI | GTCTC | 9 cut(s) | 880, 931, 1817, 1854, 2360, 2465, 2698, 2802, 3196 |
| BsmFI | GGGAC | 2 cut(s) | 1411, 1517 |
| Bso31I | GGTCTC | 3 cut(s) | 1854, 2465, 2802 |
| BsoBI | CYCGRG | 1 cut(s) | 3273 |
| Bsp1286I | GDGCHC | 4 cut(s) | 825, 861, 1194, 2076 |
| Bsp13I | TCCGGA | 1 cut(s) | 1333 |
| Bsp1407I | TGTACA | 1 cut(s) | 3264 |
| Bsp19I | CCATGG | 3 cut(s) | 2096, 2395, 2812 |
| BspDI | ATCGAT | 1 cut(s) | 2521 |
| BspEI | TCCGGA | 1 cut(s) | 1333 |
| BspLI | GGNNCC | 5 cut(s) | 2424, 2845, 2997, 3127, 3401 |
| BspMAI | CTGCAG | 4 cut(s) | 778, 1228, 1252, 1422 |
| BspMI | ACCTGC | 3 cut(s) | 2950, 3094, 3205 |
| BspQI | GCTCTTC | 4 cut(s) | 123, 225, 1142, 2506 |
| BspT107I | GGYRCC | 1 cut(s) | 2843 |
| BspTNI | GGTCTC | 3 cut(s) | 1854, 2465, 2802 |
| BsrDI | GCAATG | 4 cut(s) | 928, 1159, 1632, 2009 |
| BsrGI | TGTACA | 1 cut(s) | 3264 |
| BsrI | ACTGG | 5 cut(s) | 177, 576, 962, 2424, 2577 |
| BssECI | CCNNGG | 8 cut(s) | 1535, 1925, 2096, 2395, 2494, 2812, 3272, 3448 |
| BssSI | CACGAG | 1 cut(s) | 1986 |
| BssT1I | CCWWGG | 3 cut(s) | 2096, 2395, 2812 |
| Bst2BI | CACGAG | 1 cut(s) | 1986 |
| Bst2UI | CCWGG | 2 cut(s) | 1431, 1537 |
| Bst4CI | ACNGT | 6 cut(s) | 1468, 1587, 1864, 2692, 2828, 2912 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1232 |
| BstAUI | TGTACA | 1 cut(s) | 3264 |
| BstC8I | GCNNGC | 5 cut(s) | 1810, 1832, 3065, 3284, 3445 |
| BstDSI | CCRYGG | 4 cut(s) | 2096, 2395, 2812, 3448 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 153 |
| BstHHI | GCGC | 1 cut(s) | 192 |
| BstMAI | GTCTC | 9 cut(s) | 880, 931, 1817, 1854, 2360, 2465, 2698, 2802, 3196 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 113, 189, 244, 302, 638, 1232, 1241, 3064, 3073 |
| BstNI | CCWGG | 2 cut(s) | 1431, 1537 |
| BstNSI | RCATGY | 3 cut(s) | 1882, 2072, 2345 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1212 |
| BstSCI | CCNGG | 3 cut(s) | 430, 1429, 1535 |
| BstSFI | CTRYAG | 5 cut(s) | 774, 1224, 1248, 1418, 1467 |
| Bsu15I | ATCGAT | 1 cut(s) | 2521 |
| Bsu36I | CCTNAGG | 2 cut(s) | 470, 3000 |
| BsuI | GTATCC | 1 cut(s) | 595 |
| BsuTUI | ATCGAT | 1 cut(s) | 2521 |
| BtgI | CCRYGG | 4 cut(s) | 2096, 2395, 2812, 3448 |
| BtrI | CACGTC | 2 cut(s) | 457, 3494 |
| BtsI | GCAGTG | 1 cut(s) | 1527 |
| BveI | ACCTGC | 3 cut(s) | 2950, 3094, 3205 |
| Cac8I | GCNNGC | 5 cut(s) | 1810, 1832, 3065, 3284, 3445 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1028 |
| CfoI | GCGC | 1 cut(s) | 192 |
| Cfr13I | GGNCC | 5 cut(s) | 474, 680, 709, 2751, 2939 |
| ClaI | ATCGAT | 1 cut(s) | 2521 |
| Csp6I | GTAC | 8 cut(s) | 916, 1046, 2417, 2564, 2688, 2781, 3265, 3297 |
| CviQI | GTAC | 8 cut(s) | 916, 1046, 2417, 2564, 2688, 2781, 3265, 3297 |
| DraI | TTTAAA | 3 cut(s) | 1485, 1729, 2124 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2190 |
| EaeI | YGGCCR | 4 cut(s) | 2158, 2392, 2479, 3445 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2190 |
| Ecl136II | GAGCTC | 1 cut(s) | 859 |
| Eco130I | CCWWGG | 3 cut(s) | 2096, 2395, 2812 |
| Eco147I | AGGCCT | 1 cut(s) | 148 |
| Eco24I | GRGCYC | 2 cut(s) | 861, 1194 |
| Eco31I | GGTCTC | 3 cut(s) | 1854, 2465, 2802 |
| Eco32I | GATATC | 1 cut(s) | 3503 |
| Eco47I | GGWCC | 2 cut(s) | 2751, 2939 |
| Eco53kI | GAGCTC | 1 cut(s) | 859 |
| Eco57I | CTGAAG | 2 cut(s) | 236, 727 |
| Eco81I | CCTNAGG | 2 cut(s) | 470, 3000 |
| Eco88I | CYCGRG | 1 cut(s) | 3273 |
| EcoICRI | GAGCTC | 1 cut(s) | 859 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 153 |
| EcoO109I | RGGNCCY | 1 cut(s) | 709 |
| EcoRII | CCWGG | 2 cut(s) | 1429, 1535 |
| EcoRV | GATATC | 1 cut(s) | 3503 |
| EcoT14I | CCWWGG | 3 cut(s) | 2096, 2395, 2812 |
| EcoT38I | GRGCYC | 2 cut(s) | 861, 1194 |
| ErhI | CCWWGG | 3 cut(s) | 2096, 2395, 2812 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 725, 757, 1365, 1397 |
| FaqI | GGGAC | 2 cut(s) | 1411, 1517 |
| FauI | CCCGC | 2 cut(s) | 231, 1823 |
| FauNDI | CATATG | 3 cut(s) | 883, 1058, 2307 |
| FbaI | TGATCA | 3 cut(s) | 1156, 1456, 2209 |
| FblI | GTMKAC | 1 cut(s) | 2057 |
| FriOI | GRGCYC | 2 cut(s) | 861, 1194 |
| FspBI | CTAG | 9 cut(s) | 180, 633, 990, 999, 2264, 2663, 3023, 3068, 3471 |
| GlaI | GCGC | 1 cut(s) | 191 |
| GsaI | CCCAGC | 1 cut(s) | 33 |
| GsuI | CTGGAG | 5 cut(s) | 945, 1005, 1257, 2489, 3216 |
| HapII | CCGG | 4 cut(s) | 432, 1121, 1334, 3538 |
| HhaI | GCGC | 1 cut(s) | 192 |
| Hin6I | GCGC | 1 cut(s) | 190 |
| HinP1I | GCGC | 1 cut(s) | 190 |
| HincII | GTYRAC | 4 cut(s) | 271, 1217, 1464, 1590 |
| HindII | GTYRAC | 4 cut(s) | 271, 1217, 1464, 1590 |
| HindIII | AAGCTT | 3 cut(s) | 320, 1508, 2513 |
| HpaII | CCGG | 4 cut(s) | 432, 1121, 1334, 3538 |
| HphI | GGTGA | 4 cut(s) | 47, 2114, 2909, 3229 |
| HpyCH4III | ACNGT | 6 cut(s) | 1468, 1587, 1864, 2692, 2828, 2912 |
| HpyCH4IV | ACGT | 2 cut(s) | 456, 3493 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 113, 189, 244, 302, 638, 1232, 1241, 3064, 3073 |
| HpySE526I | ACGT | 2 cut(s) | 456, 3493 |
| HspAI | GCGC | 1 cut(s) | 190 |
| Kpn2I | TCCGGA | 1 cut(s) | 1333 |
| Ksp22I | TGATCA | 3 cut(s) | 1156, 1456, 2209 |
| LguI | GCTCTTC | 4 cut(s) | 123, 225, 1142, 2506 |
| LmnI | GCTCC | 6 cut(s) | 820, 1549, 1623, 2677, 3055, 3382 |
| MaeI | CTAG | 9 cut(s) | 180, 633, 990, 999, 2264, 2663, 3023, 3068, 3471 |
| MaeII | ACGT | 2 cut(s) | 456, 3493 |
| MaeIII | GTNAC | 5 cut(s) | 298, 994, 1990, 2822, 3239 |
| MfeI | CAATTG | 2 cut(s) | 99, 911 |
| MhlI | GDGCHC | 4 cut(s) | 825, 861, 1194, 2076 |
| MlsI | TGGCCA | 3 cut(s) | 2160, 2394, 2481 |
| MluNI | TGGCCA | 3 cut(s) | 2160, 2394, 2481 |
| MlyI | GAGTC | 7 cut(s) | 537, 616, 1031, 1165, 1998, 2206, 2362 |
| MmeI | TCCRAC | 6 cut(s) | 505, 1863, 2751, 2784, 3136, 3162 |
| Mox20I | TGGCCA | 3 cut(s) | 2160, 2394, 2481 |
| MroI | TCCGGA | 1 cut(s) | 1333 |
| MroXI | GAANNNNTTC | 3 cut(s) | 422, 740, 786 |
| MscI | TGGCCA | 3 cut(s) | 2160, 2394, 2481 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2450, 2898 |
| Msp20I | TGGCCA | 3 cut(s) | 2160, 2394, 2481 |
| MspA1I | CMGCKG | 4 cut(s) | 200, 238, 1025, 1742 |
| MspI | CCGG | 4 cut(s) | 432, 1121, 1334, 3538 |
| MspR9I | CCNGG | 3 cut(s) | 432, 1431, 1537 |
| MunI | CAATTG | 2 cut(s) | 99, 911 |
| MvaI | CCWGG | 2 cut(s) | 1431, 1537 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 113, 189, 244, 302, 638, 1232, 1241, 3064, 3073 |
| NciI | CCSGG | 1 cut(s) | 432 |
| NcoI | CCATGG | 3 cut(s) | 2096, 2395, 2812 |
| NdeI | CATATG | 3 cut(s) | 883, 1058, 2307 |
| NlaIV | GGNNCC | 5 cut(s) | 2424, 2845, 2997, 3127, 3401 |
| NmeAIII | GCCGAG | 3 cut(s) | 55, 622, 1906 |
| NmuCI | GTSAC | 2 cut(s) | 1990, 2822 |
| NspI | RCATGY | 3 cut(s) | 1882, 2072, 2345 |
| PacI | TTAATTAA | 1 cut(s) | 1656 |
| PaqCI | CACCTGC | 1 cut(s) | 3205 |
| PceI | AGGCCT | 1 cut(s) | 148 |
| PciI | ACATGT | 1 cut(s) | 1878 |
| PciSI | GCTCTTC | 4 cut(s) | 123, 225, 1142, 2506 |
| PdmI | GAANNNNTTC | 3 cut(s) | 422, 740, 786 |
| PfeI | GAWTC | 9 cut(s) | 20, 176, 1202, 2313, 2348, 2380, 2523, 2831, 2890 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 677, 977, 1028 |
| PfoI | TCCNGGA | 1 cut(s) | 430 |
| PleI | GAGTC | 7 cut(s) | 536, 616, 1031, 1165, 1997, 2205, 2362 |
| PpsI | GAGTC | 7 cut(s) | 536, 616, 1031, 1165, 1997, 2205, 2362 |
| PscI | ACATGT | 1 cut(s) | 1878 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1212 |
| PshBI | ATTAAT | 3 cut(s) | 225, 1656, 1892 |
| Psp124BI | GAGCTC | 1 cut(s) | 861 |
| Psp6I | CCWGG | 2 cut(s) | 1429, 1535 |
| PspFI | CCCAGC | 1 cut(s) | 29 |
| PspGI | CCWGG | 2 cut(s) | 1429, 1535 |
| PspN4I | GGNNCC | 5 cut(s) | 2424, 2845, 2997, 3127, 3401 |
| PspPI | GGNCC | 5 cut(s) | 474, 680, 709, 2751, 2939 |
| PstI | CTGCAG | 4 cut(s) | 778, 1228, 1252, 1422 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1028 |
| PvuII | CAGCTG | 2 cut(s) | 1025, 1742 |
| RsaI | GTAC | 8 cut(s) | 917, 1047, 2418, 2565, 2689, 2782, 3266, 3298 |
| RsaNI | GTAC | 8 cut(s) | 916, 1046, 2417, 2564, 2688, 2781, 3265, 3297 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2450, 2898 |
| SacI | GAGCTC | 1 cut(s) | 861 |
| SapI | GCTCTTC | 4 cut(s) | 123, 225, 1142, 2506 |
| Sau96I | GGNCC | 5 cut(s) | 474, 680, 709, 2751, 2939 |
| ScaI | AGTACT | 1 cut(s) | 2565 |
| SchI | GAGTC | 7 cut(s) | 537, 616, 1031, 1165, 1998, 2206, 2362 |
| ScrFI | CCNGG | 3 cut(s) | 432, 1431, 1537 |
| SduI | GDGCHC | 4 cut(s) | 825, 861, 1194, 2076 |
| SfcI | CTRYAG | 5 cut(s) | 774, 1224, 1248, 1418, 1467 |
| SinI | GGWCC | 2 cut(s) | 2751, 2939 |
| SmiI | ATTTAAAT | 1 cut(s) | 1485 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2450, 2898 |
| SmlI | CTYRAG | 4 cut(s) | 259, 1173, 1820, 2672 |
| SmoI | CTYRAG | 4 cut(s) | 259, 1173, 1820, 2672 |
| SpeI | ACTAGT | 2 cut(s) | 998, 3470 |
| SseBI | AGGCCT | 1 cut(s) | 148 |
| SspI | AATATT | 1 cut(s) | 1890 |
| SspMI | CTAG | 9 cut(s) | 180, 633, 990, 999, 2264, 2663, 3023, 3068, 3471 |
| SstI | GAGCTC | 1 cut(s) | 861 |
| StuI | AGGCCT | 1 cut(s) | 148 |
| StyD4I | CCNGG | 3 cut(s) | 430, 1429, 1535 |
| StyI | CCWWGG | 3 cut(s) | 2096, 2395, 2812 |
| SwaI | ATTTAAAT | 1 cut(s) | 1485 |
| TaaI | ACNGT | 6 cut(s) | 1468, 1587, 1864, 2692, 2828, 2912 |
| TaiI | ACGT | 2 cut(s) | 459, 3496 |
| TaqI | TCGA | 3 cut(s) | 1392, 2049, 2521 |
| TaqII | GACCGA | 2 cut(s) | 1836, 2508 |
| TatI | WGTACW | 4 cut(s) | 1045, 2416, 2563, 3264 |
| TfiI | GAWTC | 9 cut(s) | 20, 176, 1202, 2313, 2348, 2380, 2523, 2831, 2890 |
| TseFI | GTSAC | 2 cut(s) | 1990, 2822 |
| Tsp45I | GTSAC | 2 cut(s) | 1990, 2822 |
| TspGWI | ACGGA | 2 cut(s) | 1991, 2311 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 677, 977, 1028 |
| VpaK11BI | GGWCC | 2 cut(s) | 2751, 2939 |
| VspI | ATTAAT | 3 cut(s) | 225, 1656, 1892 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 153 |
| XceI | RCATGY | 3 cut(s) | 1882, 2072, 2345 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1543 |
| XmiI | GTMKAC | 1 cut(s) | 2057 |
| XmnI | GAANNNNTTC | 3 cut(s) | 422, 740, 786 |
| XspI | CTAG | 9 cut(s) | 180, 633, 990, 999, 2264, 2663, 3023, 3068, 3471 |
| ZrmI | AGTACT | 1 cut(s) | 2565 |