Rmu_ssc0000175.1_g000030

Regulator of nonsense transcripts

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000175.1
OG0007975
Physical Location & Seq
Forward (+)
141156 .. 146936
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000175.1_g000030.1.cds

Sequence Viewer

Length: 2382 bp
atgctgcggaatcatctgcagatgttggaacctgcgcctgaattagaccagagtcaacaggctacagaagatgctgcggaatcatctgcagatgttggtgctttacaagaaggaaaaatcagagagaaaggaaaggagaaggaagaaaaagataaagacaagattaaagatgcagacaaagagaaaggtgacaagaagggagagaatgaaaaggagaaactaaaaagtatcgaagggacgaatttggatgctttactgcagaggctccctggttgtgtgagccgtgacctcattgaccaattgactgtagagttttgttacctaaattctaaagcaaatcggaaaaaacttgtgaggtcagtgtttaatgtccccaggacatcgttggagttactgccgtactactcacgcatggttgccactctgtcgacttgtatgaaggatgtatcttccatgctcctggctatgttggaggaggagttcaatttcttaataaataaaaaggatcaaatgaacattgaaacaaagattaggaatattagatttattggagaactctgcaagttcagaattgcaccagctggtcttgtgtttagttgtttaaaggcttgtctagatgatttttctcatcataatattgatgttgcttgcaatcttcttgagacttgtggccgttttctgtatcgctctcctgaaactactgtgcggatggctaacatgttggaaatattaatgcgcttaaagaatgtaaaaaatttggatcctcggcacagcacccttgttgaaaatgcttactacctgtgcaaaccgcctgaaagatccgcacgagttgctaaagtccgtcctccattgcatcagtatataagaaagttgctattctcagatcttgataaatctacccttgagcatgtgctgaggcaattgcgtaaactaccatggggtgaatgtgagccatatcttttgaaatgctttatgaaggttcacaaagggaagtacggtcagatccacttgattgcttctctcactgctggcctgagtcgctatcatgatgaatttgctgtctctgttgttgacgaggttttagaggagatccggcttggccttgaattaaatgagtacggaatgcagcaaagacgaattgcccatatgcgattcctaggagagttatacaactatgaacatgtagattcttctgttatatttgagactctatacttgattctcatctttggccatggcacaacagagcaagatgcattagatccaccagaagattgtttccgcataaggatggttattactcttctcgaaacttgtggacattactttgaccgaggctcttctaagaggaaacttgatcgcttcttgatgcactttcagagatatatactaagcaaaggtgtactaccactagatgttgagtttgacttacaggacttatttgcagaattgcgtcccaatatgactcgatactcatcccttgaagaagttaatgcagctctggtagagcttgaggagcactcggagaaggccaataatgagaagcactcagacactgaaaagtcttcaaggaggacaacctccaataaaatgtcagtgaatgaacagggtgctgcgaatggtacagagggaaatggggtggtgcatgaagaccatagagatagtgacagtgattcaggaagtggcactgttgatccagacagacatgaagaagaattggatgaagagaatcatgatgatggatcagagagtgaagaggaggatgatgatgggggtggacctgcttctgacgaggaggatgaagtccatgtcagacagaaggttgcagaggtggatcctcaggaagaagcagattttgagctggatctcaaggctgttatgcaggaaagcatggagcaacgaaggcaagagctgcgcggtcggcctacattgaatatgatgataccaatgaatgtgtttgaggggtccatcaaggaccatcatggacgtgttggaggggacagtggtgatgagggggatgaggagtctggaggaagcaaggatgtccaagtcaaagttctcgtgaagcgtggtaacaagcaacaaacaaaacagatgtacatccctcgtgattgctcccttatacagagcacaaaacagaaagaagcggcagagcttgaagagaaacaagacatcaagaggctagtcttggaatataatgatagagaagaggaggaacttaatggattagggaaccagactatgaactatgcgcagagtggtggcaatagatttgctggtcgtggcagcacttgggaaggaactagcggcagaggtggtggaccacgtcgatatcacagtagttattctggtgctggagtttattacagcaggaggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031503 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0034655 GO:0035145 GO:0035690 GO:0035770 GO:0036464 GO:0042162 GO:0042221 GO:0042493 GO:0042742 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046483 GO:0046677 GO:0046700 GO:0046907 GO:0048519 GO:0048571 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0071166 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071426 GO:0071427 GO:0071446 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
MIF4G Upf2

Protein Analysis

793

Amino Acids

90.43

Weight (kDa)

5.35

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2253
Acc36I ACCTGC 2 cut(s) 40, 1789
AccI GTMKAC 1 cut(s) 428
AccII CGCG 1 cut(s) 1917
AciI CCGC 9 cut(s) 7, 77, 706, 809, 822, 1282, 1917, 2147, 2307
AcoI YGGCCR 2 cut(s) 670, 1231
AcsI RAATTY 4 cut(s) 241, 325, 754, 1052
AfaI GTAC 6 cut(s) 401, 995, 1118, 1404, 1624, 2099
AflIII ACRYGT 3 cut(s) 717, 1180, 1987
AgsI TTSAA 9 cut(s) 484, 521, 785, 964, 1106, 1484, 1569, 1933, 2159
AjiI CACGTC 2 cut(s) 1988, 2327
AjnI CCWGG 3 cut(s) 268, 374, 459
AjuI GAANNNNNNNTTGG 2 cut(s) 2040, 2072
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
AluBI AGCT 6 cut(s) 581, 1499, 1510, 1861, 1912, 2155
AluI AGCT 6 cut(s) 581, 1499, 1510, 1861, 1912, 2155
Alw21I GWGCWC 2 cut(s) 1521, 2132
Alw26I GTCTC 3 cut(s) 656, 1066, 1199
AlwNI CAGNNNCTG 1 cut(s) 1556
AoxI GGCC 6 cut(s) 670, 1030, 1099, 1231, 1530, 1922
ApeKI GCWGC 7 cut(s) 4, 74, 1126, 1496, 1613, 1912, 2286
ApoI RAATTY 4 cut(s) 241, 325, 754, 1052
AseI ATTAAT 1 cut(s) 731
AspA2I CCTAGG 1 cut(s) 1156
AspLEI GCGC 4 cut(s) 37, 738, 1917, 2254
AspS9I GGNCC 4 cut(s) 1778, 1965, 1975, 2321
AsuHPI GGTGA 3 cut(s) 200, 953, 2018
AvaII GGWCC 4 cut(s) 1778, 1965, 1975, 2321
AvrII CCTAGG 1 cut(s) 1156
AxyI CCTNAGG 1 cut(s) 1839
BalI TGGCCA 1 cut(s) 1233
BamHI GGATCC 2 cut(s) 760, 1834
BauI CACGAG 3 cut(s) 825, 2060, 2106
BbsI GAAGAC 2 cut(s) 1557, 1656
Bbv12I GWGCWC 2 cut(s) 1521, 2132
BbvCI CCTCAGC 1 cut(s) 914
BbvI GCAGC 6 cut(s) 61, 1138, 1508, 1600, 1899, 2298
BccI CCATC 6 cut(s) 703, 1285, 1733, 1763, 1976, 1986
BceAI ACGGC 3 cut(s) 267, 382, 657
BciT130I CCWGG 3 cut(s) 270, 376, 461
BcoDI GTCTC 3 cut(s) 656, 1066, 1199
BfaI CTAG 5 cut(s) 614, 1157, 1412, 2183, 2304
BfmI CTRYAG 5 cut(s) 17, 63, 87, 257, 306
BfuAI ACCTGC 2 cut(s) 40, 1789
BglII AGATCT 1 cut(s) 883
BisI GCNGC 9 cut(s) 5, 75, 1127, 1497, 1614, 1913, 2148, 2287, 2308
BlnI CCTAGG 1 cut(s) 1156
BlsI GCNGC 9 cut(s) 6, 76, 1128, 1498, 1615, 1914, 2149, 2288, 2309
Bme1390I CCNGG 3 cut(s) 270, 376, 461
Bme18I GGWCC 4 cut(s) 1778, 1965, 1975, 2321
BmgBI CACGTC 2 cut(s) 1988, 2327
BmgT120I GGNCC 4 cut(s) 1778, 1965, 1975, 2321
BmiI GGNNCC 6 cut(s) 30, 266, 762, 1836, 1966, 2234
BmrFI CCNGG 3 cut(s) 270, 376, 461
BmsI GCATC 6 cut(s) 61, 160, 238, 862, 1243, 1359
BoxI GACNNNNGTC 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 1557, 1656
BplI GAGNNNNNCTC 4 cut(s) 1505, 1537, 1532, 1564
BpmI CTGGAG 2 cut(s) 2049, 2376
Bpu10I CCTNAGC 1 cut(s) 914
BpuEI CTTGAG 4 cut(s) 680, 923, 1532, 1853
BsaBI GATNNNNATC 3 cut(s) 1223, 1474, 2099
BsaJI CCNNGG 7 cut(s) 268, 374, 764, 935, 1156, 1234, 1333
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bse21I CCTNAGG 1 cut(s) 1839
Bse3DI GCAATG 1 cut(s) 848
Bse8I GATNNNNATC 3 cut(s) 1223, 1474, 2099
BseBI CCWGG 3 cut(s) 270, 376, 461
BseDI CCNNGG 7 cut(s) 268, 374, 764, 935, 1156, 1234, 1333
BseJI GATNNNNATC 3 cut(s) 1223, 1474, 2099
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 5 cut(s) 894, 905, 1025, 1563, 1853
BseRI GAGGAG 8 cut(s) 488, 491, 1100, 1529, 1772, 1808, 2036, 2225
BseXI GCAGC 6 cut(s) 61, 1138, 1508, 1600, 1899, 2298
Bsh1236I CGCG 1 cut(s) 1917
Bsh1285I CGRYCG 1 cut(s) 1921
BshFI GGCC 6 cut(s) 672, 1032, 1101, 1233, 1532, 1924
BsiEI CGRYCG 1 cut(s) 1921
BsiHKAI GWGCWC 2 cut(s) 1521, 2132
BsiSI CCGG 1 cut(s) 1093
BslFI GGGAC 4 cut(s) 250, 356, 1440, 2012
BsmAI GTCTC 3 cut(s) 656, 1066, 1199
BsmFI GGGAC 4 cut(s) 250, 356, 1440, 2012
BsmI GAATGC 1 cut(s) 1128
BsnI GGCC 6 cut(s) 672, 1032, 1101, 1233, 1532, 1924
Bsp1286I GDGCHC 2 cut(s) 1521, 2132
Bsp1407I TGTACA 1 cut(s) 2097
Bsp19I CCATGG 2 cut(s) 935, 1234
BspACI CCGC 9 cut(s) 7, 77, 706, 809, 822, 1282, 1917, 2147, 2307
BspANI GGCC 6 cut(s) 672, 1032, 1101, 1233, 1532, 1924
BspCNI CTCAG 5 cut(s) 893, 906, 1026, 1562, 1852
BspFNI CGCG 1 cut(s) 1917
BspHI TCATGA 2 cut(s) 1045, 1732
BspLI GGNNCC 6 cut(s) 30, 266, 762, 1836, 1966, 2234
BspMAI CTGCAG 3 cut(s) 21, 91, 261
BspMI ACCTGC 2 cut(s) 40, 1789
BspQI GCTCTTC 1 cut(s) 1345
BsrDI GCAATG 1 cut(s) 848
BsrGI TGTACA 1 cut(s) 2097
BssECI CCNNGG 7 cut(s) 268, 374, 764, 935, 1156, 1234, 1333
BssSI CACGAG 3 cut(s) 825, 2060, 2106
BssT1I CCWWGG 3 cut(s) 935, 1156, 1234
Bst2BI CACGAG 3 cut(s) 825, 2060, 2106
Bst2UI CCWGG 3 cut(s) 270, 376, 461
Bst4CI ACNGT 7 cut(s) 307, 703, 998, 1670, 1690, 2003, 2339
Bst6I CTCTTC 6 cut(s) 1308, 1345, 1719, 1749, 2154, 2202
BstAPI GCANNNNNTGC 2 cut(s) 830, 1912
BstAUI TGTACA 1 cut(s) 2097
BstC8I GCNNGC 2 cut(s) 649, 1030
BstDEI CTNAG 7 cut(s) 880, 914, 1034, 1344, 1391, 1549, 1839
BstDSI CCRYGG 2 cut(s) 935, 1234
BstFNI CGCG 1 cut(s) 1917
BstHHI GCGC 4 cut(s) 37, 738, 1917, 2254
BstMAI GTCTC 3 cut(s) 656, 1066, 1199
BstMCI CGRYCG 1 cut(s) 1921
BstMWI GCNNNNNNNGC 6 cut(s) 830, 1038, 1516, 1903, 1912, 1921
BstNI CCWGG 3 cut(s) 270, 376, 461
BstNSI RCATGY 3 cut(s) 721, 911, 1184
BstPAI GACNNNNGTC 1 cut(s) 51
BstSCI CCNGG 3 cut(s) 268, 374, 459
BstSFI CTRYAG 5 cut(s) 17, 63, 87, 257, 306
BstUI CGCG 1 cut(s) 1917
BstV1I GCAGC 6 cut(s) 61, 1138, 1508, 1600, 1899, 2298
BstV2I GAAGAC 2 cut(s) 1557, 1656
BstX2I RGATCY 8 cut(s) 760, 818, 883, 1002, 1089, 1261, 1834, 1864
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 8 cut(s) 760, 818, 883, 1002, 1089, 1261, 1834, 1864
Bsu36I CCTNAGG 1 cut(s) 1839
BsuRI GGCC 6 cut(s) 672, 1032, 1101, 1233, 1532, 1924
BtgI CCRYGG 2 cut(s) 935, 1234
BtrI CACGTC 2 cut(s) 1988, 2327
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 7 cut(s) 366, 1023, 1554, 1602, 1675, 1686, 2008
BveI ACCTGC 2 cut(s) 40, 1789
Cac8I GCNNGC 2 cut(s) 649, 1030
CaiI CAGNNNCTG 1 cut(s) 1556
CciI TCATGA 2 cut(s) 1045, 1732
CfoI GCGC 4 cut(s) 37, 738, 1917, 2254
Cfr13I GGNCC 4 cut(s) 1778, 1965, 1975, 2321
CseI GACGC 1 cut(s) 1442
Csp6I GTAC 6 cut(s) 400, 994, 1117, 1403, 1623, 2098
CviQI GTAC 6 cut(s) 400, 994, 1117, 1403, 1623, 2098
DdeI CTNAG 7 cut(s) 880, 914, 1034, 1344, 1391, 1549, 1839
DraI TTTAAA 1 cut(s) 603
EaeI YGGCCR 2 cut(s) 670, 1231
Eam1104I CTCTTC 6 cut(s) 1308, 1345, 1719, 1749, 2154, 2202
EarI CTCTTC 6 cut(s) 1308, 1345, 1719, 1749, 2154, 2202
Eco130I CCWWGG 3 cut(s) 935, 1156, 1234
Eco32I GATATC 1 cut(s) 2333
Eco47I GGWCC 4 cut(s) 1778, 1965, 1975, 2321
Eco81I CCTNAGG 1 cut(s) 1839
EcoRII CCWGG 3 cut(s) 268, 374, 459
EcoRV GATATC 1 cut(s) 2333
EcoT14I CCWWGG 3 cut(s) 935, 1156, 1234
EcoT22I ATGCAT 1 cut(s) 1258
ErhI CCWWGG 3 cut(s) 935, 1156, 1234
FaqI GGGAC 4 cut(s) 250, 356, 1440, 2012
FauNDI CATATG 1 cut(s) 1146
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 9 cut(s) 5, 75, 1127, 1497, 1614, 1913, 2148, 2287, 2308
Fsp4HI GCNGC 9 cut(s) 5, 75, 1127, 1497, 1614, 1913, 2148, 2287, 2308
FspBI CTAG 5 cut(s) 614, 1157, 1412, 2183, 2304
FspI TGCGCA 1 cut(s) 2253
GlaI GCGC 4 cut(s) 36, 737, 1916, 2253
GluI GCNGC 9 cut(s) 5, 75, 1127, 1497, 1614, 1913, 2148, 2287, 2308
GsuI CTGGAG 2 cut(s) 2049, 2376
HaeIII GGCC 6 cut(s) 672, 1032, 1101, 1233, 1532, 1924
HapII CCGG 1 cut(s) 1093
HgaI GACGC 1 cut(s) 1442
HhaI GCGC 4 cut(s) 37, 738, 1917, 2254
Hin6I GCGC 4 cut(s) 35, 736, 1915, 2252
HinP1I GCGC 4 cut(s) 35, 736, 1915, 2252
HincII GTYRAC 3 cut(s) 56, 429, 1072
HindII GTYRAC 3 cut(s) 56, 429, 1072
HpaII CCGG 1 cut(s) 1093
HphI GGTGA 3 cut(s) 200, 953, 2018
Hpy166II GTNNAC 9 cut(s) 56, 429, 929, 982, 1072, 1319, 1403, 1778, 2321
Hpy8I GTNNAC 9 cut(s) 56, 429, 929, 982, 1072, 1319, 1403, 1778, 2321
Hpy99I CGWCG 1 cut(s) 2331
HpyCH4III ACNGT 7 cut(s) 307, 703, 998, 1670, 1690, 2003, 2339
HpyCH4IV ACGT 2 cut(s) 1987, 2326
HpyF10VI GCNNNNNNNGC 6 cut(s) 830, 1038, 1516, 1903, 1912, 1921
HpyF3I CTNAG 7 cut(s) 880, 914, 1034, 1344, 1391, 1549, 1839
HpySE526I ACGT 2 cut(s) 1987, 2326
HspAI GCGC 4 cut(s) 35, 736, 1915, 2252
LguI GCTCTTC 1 cut(s) 1345
LmnI GCTCC 5 cut(s) 270, 462, 1516, 1894, 2120
Lsp1109I GCAGC 6 cut(s) 61, 1138, 1508, 1600, 1899, 2298
LweI GCATC 6 cut(s) 61, 160, 238, 862, 1243, 1359
MaeI CTAG 5 cut(s) 614, 1157, 1412, 2183, 2304
MaeII ACGT 2 cut(s) 1987, 2326
MaeIII GTNAC 6 cut(s) 188, 284, 317, 390, 1664, 2072
MfeI CAATTG 2 cut(s) 299, 920
MflI RGATCY 8 cut(s) 760, 818, 883, 1002, 1089, 1261, 1834, 1864
MhlI GDGCHC 2 cut(s) 1521, 2132
MlsI TGGCCA 1 cut(s) 1233
MluNI TGGCCA 1 cut(s) 1233
MlyI GAGTC 5 cut(s) 61, 1045, 1201, 1459, 2033
MmeI TCCRAC 5 cut(s) 6, 366, 450, 702, 1972
Mox20I TGGCCA 1 cut(s) 1233
Mph1103I ATGCAT 1 cut(s) 1258
MscI TGGCCA 1 cut(s) 1233
MseI TTAA 9 cut(s) 165, 366, 491, 602, 731, 740, 1109, 1491, 2220
MslI CAYNNNNRTG 3 cut(s) 1289, 1737, 1986
Msp20I TGGCCA 1 cut(s) 1233
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 1 cut(s) 1093
MspR9I CCNGG 3 cut(s) 270, 376, 461
MunI CAATTG 2 cut(s) 299, 920
Mva1269I GAATGC 1 cut(s) 1128
MvaI CCWGG 3 cut(s) 270, 376, 461
MvnI CGCG 1 cut(s) 1917
MwoI GCNNNNNNNGC 6 cut(s) 830, 1038, 1516, 1903, 1912, 1921
NcoI CCATGG 2 cut(s) 935, 1234
NdeI CATATG 1 cut(s) 1146
NlaIV GGNNCC 6 cut(s) 30, 266, 762, 1836, 1966, 2234
NmeAIII GCCGAG 1 cut(s) 745
NmuCI GTSAC 3 cut(s) 188, 284, 1664
NsbI TGCGCA 1 cut(s) 2253
NsiI ATGCAT 1 cut(s) 1258
NspI RCATGY 3 cut(s) 721, 911, 1184
PagI TCATGA 2 cut(s) 1045, 1732
PciI ACATGT 2 cut(s) 717, 1180
PciSI GCTCTTC 1 cut(s) 1345
PctI GAATGC 1 cut(s) 1128
PfeI GAWTC 7 cut(s) 10, 80, 1152, 1187, 1219, 1673, 1729
PflFI GACNNNGTC 1 cut(s) 2325
PkrI GCNGC 9 cut(s) 6, 76, 1128, 1498, 1615, 1914, 2149, 2288, 2309
PleI GAGTC 5 cut(s) 60, 1044, 1201, 1459, 2032
PpsI GAGTC 5 cut(s) 60, 1044, 1201, 1459, 2032
PscI ACATGT 2 cut(s) 717, 1180
PshAI GACNNNNGTC 1 cut(s) 51
PshBI ATTAAT 1 cut(s) 731
Psp6I CCWGG 3 cut(s) 268, 374, 459
PspGI CCWGG 3 cut(s) 268, 374, 459
PspN4I GGNNCC 6 cut(s) 30, 266, 762, 1836, 1966, 2234
PspPI GGNCC 4 cut(s) 1778, 1965, 1975, 2321
PstI CTGCAG 3 cut(s) 21, 91, 261
PstNI CAGNNNCTG 1 cut(s) 1556
PsuI RGATCY 8 cut(s) 760, 818, 883, 1002, 1089, 1261, 1834, 1864
PsyI GACNNNGTC 1 cut(s) 2325
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 6 cut(s) 401, 995, 1118, 1404, 1624, 2099
RsaNI GTAC 6 cut(s) 400, 994, 1117, 1403, 1623, 2098
RseI CAYNNNNRTG 3 cut(s) 1289, 1737, 1986
SalI GTCGAC 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 1345
SaqAI TTAA 9 cut(s) 165, 366, 491, 602, 731, 740, 1109, 1491, 2220
SatI GCNGC 9 cut(s) 5, 75, 1127, 1497, 1614, 1913, 2148, 2287, 2308
Sau96I GGNCC 4 cut(s) 1778, 1965, 1975, 2321
SchI GAGTC 5 cut(s) 61, 1045, 1201, 1459, 2033
ScrFI CCNGG 3 cut(s) 270, 376, 461
SduI GDGCHC 2 cut(s) 1521, 2132
SfaNI GCATC 6 cut(s) 61, 160, 238, 862, 1243, 1359
SfcI CTRYAG 5 cut(s) 17, 63, 87, 257, 306
SinI GGWCC 4 cut(s) 1778, 1965, 1975, 2321
SmiMI CAYNNNNRTG 3 cut(s) 1289, 1737, 1986
SmlI CTYRAG 4 cut(s) 659, 902, 1511, 1868
SmoI CTYRAG 4 cut(s) 659, 902, 1511, 1868
SsiI CCGC 9 cut(s) 7, 77, 706, 809, 822, 1282, 1917, 2147, 2307
SspI AATATT 3 cut(s) 538, 637, 729
SspMI CTAG 5 cut(s) 614, 1157, 1412, 2183, 2304
StyD4I CCNGG 3 cut(s) 268, 374, 459
StyI CCWWGG 3 cut(s) 935, 1156, 1234
TaaI ACNGT 7 cut(s) 307, 703, 998, 1670, 1690, 2003, 2339
TaiI ACGT 2 cut(s) 1990, 2329
TaqI TCGA 5 cut(s) 231, 428, 1308, 1468, 2329
TaqII GACCGA 1 cut(s) 1347
TatI WGTACW 2 cut(s) 1402, 2097
TauI GCSGC 2 cut(s) 2150, 2310
TfiI GAWTC 7 cut(s) 10, 80, 1152, 1187, 1219, 1673, 1729
Tru1I TTAA 9 cut(s) 165, 366, 491, 602, 731, 740, 1109, 1491, 2220
Tru9I TTAA 9 cut(s) 165, 366, 491, 602, 731, 740, 1109, 1491, 2220
TscAI CASTG 7 cut(s) 366, 1030, 1561, 1602, 1675, 1693, 2008
TseFI GTSAC 3 cut(s) 188, 284, 1664
TseI GCWGC 7 cut(s) 4, 74, 1126, 1496, 1613, 1912, 2286
Tsp45I GTSAC 3 cut(s) 188, 284, 1664
TspGWI ACGGA 2 cut(s) 830, 1134
TspRI CASTG 7 cut(s) 366, 1030, 1561, 1602, 1675, 1693, 2008
Tth111I GACNNNGTC 1 cut(s) 2325
VpaK11BI GGWCC 4 cut(s) 1778, 1965, 1975, 2321
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 4 cut(s) 241, 325, 754, 1052
XbaI TCTAGA 1 cut(s) 613
XceI RCATGY 3 cut(s) 721, 911, 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmaJI CCTAGG 1 cut(s) 1156
XmiI GTMKAC 1 cut(s) 428
XspI CTAG 5 cut(s) 614, 1157, 1412, 2183, 2304
Zsp2I ATGCAT 1 cut(s) 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.