Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006672

Physical Location & Seq

Genomic Coordinates Reverse (-)

503131 .. 507803

Gene Structure 4673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGAAACGAGACCAGACCCTGATATTGATGATGATTTTAGCGAACTATACAAGGAGTACACTGGCCCTCCTGGGTCAAATGCCACAAACACACAAGATAGGGCAAAGCCAAACAAAAGGTCCCTTACCGGGTCTGACGAGGAAGAGGAAACTCGCGACCCGAACGCCGTCCCAACTGATTTCACCAGCCGAGAAGCCAAGGTTTGGGAGGCCAAGTCAAAAGCTACTGAGAGGAACTGGAAGAAGAGGAAGGAAGAGGAAATGATTTGCAAAATCTGCGGGGAACCAGGTCACTTTACTCAGGGGTGTCCGTCTACGCTTGGAGCAAATCGCAAGTCTCAAGATTTCTTGGAAAGGGTACCTGCTAGAGAAAAGCATGTAAAATCACTTTTCACAGAGAAAGTGATAGACAGGATTGAAAAGGATATTGGCTGCAATATTAAGATGGAGGAAAAATTTATTATTGTCAGTGGCAAGGATAGGTTAATATTAAGAAAGGGGGTGGATGCTGTGCACAAAGTGATTAGAGAGGAAGGTGAGCAAAGAGATGGTTCTGGTTCTCACATGACTAGATCAAGGTCATCTGAGCGAAGTCCTGTTGGTTCACGGTTACAACGCTCTGAATCCCAGAGGTCTCATTCTGGTTCCCGAAATGGGTCACATTTTCAACAAAGATTTCACAGGCAGGAGAAGTTTGTTGAAGACCGTATACGTCAGGATATGCAGAAATTTTCCAGGGGTTCTCCACAAGCTTATGGTAATGACGGAGCTAGAAGTCGTCCAAGCCATTCAAATTCTCCAGCCCGTGCCCCTTACATGGGAAACTCATATAGTTCATACGATGTTCATAATCAGAGCATGGCTACTTATAGAAATGATGGGTGGGATTCTGATAAAAAAGGATCTGATATGCAATCTGGTCGTCGGTTTGATTACTCTGCCACCCCTCAGACATTAGAAGAATTAGAATTGGAGTACAAAAGAGAGGCAACGGAACTTGGAAGAATTCGTGACAAGGAAGAAGATGAAGAAAATTACAAACATCGTGAGGTGATTAGGGAAATGAGAGAGAACTACATGAAGAAACTGGGTACCCTGAGGGGGATGCATGCAAAACAGTGGGAGGATTTTATTCAAATTGATGCCCAGAGGCATCAACAACAGGTTAATCAGCAGATGTCGACTTCAGGTTTTGGTGGTTATAAATCACAGAATTATAATGAATATGATGGCTCCTCAGCCAATCCTCATTATGCCGGGGCCAGTTTAGCTATGGATTCAAGGAGCAGATACCCAAACCCTATGGAAAATTATCCGTCAAGGCCTCATGACAACTTTGGCGAGTTCCAGCGTCAGAGGCATGATGATTATGGGAGAGGTTACGGTCGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

465

Amino Acids

53.75

Weight (kDa)

8.14

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62330 AT3G62330
fragaria_vesca	FvH4_1g26940 FvH4_1g26940 FvH4_1g26940 FvH4_1g26940 FvH4_1g26940 FvH4_1g26940 FvH4_1g26940 FvH4_1g26940 FvH4_1g26940
malus_domestica	MD09G1285600.v1.1 MD17G1278200.v1.1
prunus_persica	Prupe.3G008300_v2.0.a1
pyrus_communis	pycom09g19280
rosa_chinensis	RchiOBHm_Chr3g0487181
rosa_laevigata	RLG00000023024
rosa_multiflora	Rmu_ssc0000366.1_g000037
rosa_roxburghii	Rroxscaffold_6G00395050
rosa_rugosa	Rorug03G0231900 Rorug03G0232000
rosa_samantha	Rh3AG280000 Rh3BG316000 Rh3CG314100 Rh3DG311300
rosa_wichuraiana	Rw3G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1203, 1218
Acc36I	ACCTGC	1 cut(s)	370
Acc65I	GGTACC	2 cut(s)	358, 1091
AccB1I	GGYRCC	2 cut(s)	358, 1091
AccB7I	CCANNNNNTGG	1 cut(s)	204
AccI	GTMKAC	3 cut(s)	314, 709, 1181
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	910
AcsI	RAATTY	4 cut(s)	455, 728, 793, 1005
AcuI	CTGAAG	1 cut(s)	1170
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	4 cut(s)	59, 360, 977, 1093
AfiI	CCNNNNNNNGG	6 cut(s)	129, 204, 654, 817, 818, 1101
AgsI	TTSAA	6 cut(s)	419, 668, 701, 792, 1136, 1281
AjnI	CCWGG	3 cut(s)	70, 286, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	4 cut(s)	224, 752, 770, 1271
AluI	AGCT	4 cut(s)	224, 752, 770, 1271
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	3 cut(s)	4, 342, 639
Alw44I	GTGCAC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	910
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	4 cut(s)	64, 210, 1260, 1322
ApaLI	GTGCAC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	4 cut(s)	455, 728, 793, 1005
ArsI	GACNNNNNNTTYG	4 cut(s)	104, 136, 320, 352
Asp718I	GGTACC	2 cut(s)	358, 1091
AspS9I	GGNCC	3 cut(s)	65, 120, 1260
AsuC2I	CCSGG	2 cut(s)	130, 1258
AsuHPI	GGTGA	3 cut(s)	175, 548, 1063
AvaII	GGWCC	1 cut(s)	120
AxyI	CCTNAGG	1 cut(s)	1097
BaeGI	GKGCMC	2 cut(s)	516, 811
BanI	GGYRCC	2 cut(s)	358, 1091
BarI	GAAGNNNNNNTAC	2 cut(s)	693, 725
BbsI	GAAGAC	1 cut(s)	708
Bbv12I	GWGCWC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	1237
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	4 cut(s)	439, 542, 872, 1223
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	902, 936
BciT130I	CCWGG	3 cut(s)	72, 288, 736
BcnI	CCSGG	2 cut(s)	130, 1258
BcoDI	GTCTC	3 cut(s)	4, 342, 639
BfaI	CTAG	3 cut(s)	366, 570, 771
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	5 cut(s)	72, 130, 288, 736, 1258
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	65, 120, 1260
BmiI	GGNNCC	7 cut(s)	122, 285, 360, 646, 1093, 1234, 1261
BmrFI	CCNGG	5 cut(s)	72, 130, 288, 736, 1258
BmrI	ACTGGG	1 cut(s)	1097
BmsI	GCATC	4 cut(s)	496, 1095, 1132, 1162
BmuI	ACTGGG	1 cut(s)	1097
BpiI	GAAGAC	1 cut(s)	708
BpmI	CTGGAG	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	1237
BpuEI	CTTGAG	1 cut(s)	324
BpuMI	CCSGG	2 cut(s)	130, 1258
BsaI	GGTCTC	2 cut(s)	4, 639
BsaJI	CCNNGG	4 cut(s)	71, 198, 735, 1257
BsaXI	ACNNNNNCTCC	4 cut(s)	52, 82, 200, 230
Bsc4I	CCNNNNNNNGG	6 cut(s)	129, 204, 654, 817, 818, 1101
Bse1I	ACTGG	4 cut(s)	67, 242, 1092, 1263
Bse21I	CCTNAGG	1 cut(s)	1097
BseBI	CCWGG	3 cut(s)	72, 288, 736
BseDI	CCNNGG	4 cut(s)	71, 198, 735, 1257
BseGI	GGATG	2 cut(s)	511, 1110
BseLI	CCNNNNNNNGG	6 cut(s)	129, 204, 654, 817, 818, 1101
BseMII	CTCAG	6 cut(s)	219, 314, 576, 962, 1088, 1251
BseNI	ACTGG	4 cut(s)	67, 242, 1092, 1263
BseRI	GAGGAG	1 cut(s)	1225
BseSI	GKGCMC	2 cut(s)	516, 811
BseXI	GCAGC	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	1387
BshFI	GGCC	4 cut(s)	66, 212, 1262, 1324
BshNI	GGYRCC	2 cut(s)	358, 1091
BsiEI	CGRYCG	1 cut(s)	1387
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	129, 1257
BslFI	GGGAC	2 cut(s)	106, 155
BslI	CCNNNNNNNGG	6 cut(s)	129, 204, 654, 817, 818, 1101
BsmAI	GTCTC	3 cut(s)	4, 342, 639
BsmFI	GGGAC	2 cut(s)	106, 155
BsnI	GGCC	4 cut(s)	66, 212, 1262, 1324
Bso31I	GGTCTC	2 cut(s)	4, 639
Bsp1286I	GDGCHC	2 cut(s)	516, 811
Bsp143I	GATC	2 cut(s)	572, 902
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	4 cut(s)	66, 212, 1262, 1324
BspCNI	CTCAG	6 cut(s)	220, 313, 577, 961, 1089, 1250
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	1327
BspLI	GGNNCC	7 cut(s)	122, 285, 360, 646, 1093, 1234, 1261
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	910
BspT107I	GGYRCC	2 cut(s)	358, 1091
BspTNI	GGTCTC	2 cut(s)	4, 639
BsrI	ACTGG	4 cut(s)	67, 242, 1092, 1263
BssECI	CCNNGG	4 cut(s)	71, 198, 735, 1257
BssMI	GATC	2 cut(s)	572, 902
BssNAI	GTATAC	1 cut(s)	710
BssT1I	CCWWGG	1 cut(s)	198
Bst1107I	GTATAC	1 cut(s)	710
Bst2UI	CCWGG	3 cut(s)	72, 288, 736
Bst4CI	ACNGT	4 cut(s)	609, 707, 1119, 1385
Bst6I	CTCTTC	3 cut(s)	138, 239, 249
BstAPI	GCANNNNNTGC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	1110
BstDEI	CTNAG	6 cut(s)	228, 300, 585, 948, 1097, 1237
BstF5I	GGATG	2 cut(s)	511, 1110
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	575, 905
BstMAI	GTCTC	3 cut(s)	4, 342, 639
BstMBI	GATC	2 cut(s)	572, 902
BstMCI	CGRYCG	1 cut(s)	1387
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 1268, 1357
BstNI	CCWGG	3 cut(s)	72, 288, 736
BstNSI	RCATGY	2 cut(s)	380, 1112
BstSCI	CCNGG	5 cut(s)	70, 128, 286, 734, 1256
BstSLI	GKGCMC	2 cut(s)	516, 811
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	902
BstYI	RGATCY	1 cut(s)	902
BstZ17I	GTATAC	1 cut(s)	710
Bsu36I	CCTNAGG	1 cut(s)	1097
BsuRI	GGCC	4 cut(s)	66, 212, 1262, 1324
BtsCI	GGATG	2 cut(s)	511, 1110
BtsIMutI	CAGTG	3 cut(s)	60, 475, 1124
BtuMI	TCGCGA	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	1110
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	1 cut(s)	1327
Cfr13I	GGNCC	3 cut(s)	65, 120, 1260
CseI	GACGC	1 cut(s)	1340
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	4 cut(s)	58, 359, 976, 1092
CviAII	CATG	8 cut(s)	377, 565, 817, 859, 1078, 1109, 1328, 1361
CviQI	GTAC	4 cut(s)	58, 359, 976, 1092
DdeI	CTNAG	6 cut(s)	228, 300, 585, 948, 1097, 1237
DpnI	GATC	2 cut(s)	574, 904
DpnII	GATC	2 cut(s)	572, 902
DraIII	CACNNNGTG	1 cut(s)	520
Eam1104I	CTCTTC	3 cut(s)	138, 239, 249
EarI	CTCTTC	3 cut(s)	138, 239, 249
Eco130I	CCWWGG	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	1324
Eco31I	GGTCTC	2 cut(s)	4, 639
Eco47I	GGWCC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	1170
Eco81I	CCTNAGG	1 cut(s)	1097
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	1005
EcoRII	CCWGG	3 cut(s)	70, 286, 734
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	1110
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	8 cut(s)	380, 568, 820, 862, 1081, 1112, 1331, 1364
FaqI	GGGAC	2 cut(s)	106, 155
FatI	CATG	8 cut(s)	376, 564, 816, 858, 1077, 1108, 1327, 1360
FauI	CCCGC	1 cut(s)	272
FblI	GTMKAC	3 cut(s)	314, 709, 1181
Fnu4HI	GCNGC	1 cut(s)	433
FokI	GGATG	2 cut(s)	518, 1117
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	3 cut(s)	366, 570, 771
GluI	GCNGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	4 cut(s)	66, 212, 1262, 1324
HapII	CCGG	2 cut(s)	129, 1257
HgaI	GACGC	1 cut(s)	1340
Hin1II	CATG	8 cut(s)	380, 568, 820, 862, 1081, 1112, 1331, 1364
HincII	GTYRAC	1 cut(s)	1182
HindII	GTYRAC	1 cut(s)	1182
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	3 cut(s)	623, 887, 1277
HpaII	CCGG	2 cut(s)	129, 1257
HphI	GGTGA	3 cut(s)	175, 548, 1063
Hpy166II	GTNNAC	6 cut(s)	60, 315, 514, 605, 710, 1182
Hpy188I	TCNGA	8 cut(s)	136, 586, 622, 855, 892, 907, 951, 1356
Hpy188III	TCNNGA	7 cut(s)	155, 341, 648, 716, 1010, 1046, 1328
Hpy8I	GTNNAC	6 cut(s)	60, 315, 514, 605, 710, 1182
Hpy99I	CGWCG	1 cut(s)	927
HpyAV	CCTTC	2 cut(s)	244, 527
HpyCH4III	ACNGT	4 cut(s)	609, 707, 1119, 1385
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	7 cut(s)	270, 435, 514, 724, 913, 1108, 1112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 1268, 1357
HpyF3I	CTNAG	6 cut(s)	228, 300, 585, 948, 1097, 1237
HpySE526I	ACGT	1 cut(s)	712
Hsp92II	CATG	8 cut(s)	380, 568, 820, 862, 1081, 1112, 1331, 1364
KpnI	GGTACC	2 cut(s)	362, 1095
Kzo9I	GATC	2 cut(s)	572, 902
LmnI	GCTCC	4 cut(s)	323, 767, 1238, 1284
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	4 cut(s)	496, 1095, 1132, 1162
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	3 cut(s)	366, 570, 771
MaeII	ACGT	1 cut(s)	712
MaeIII	GTNAC	5 cut(s)	290, 609, 657, 1010, 1379
MalI	GATC	2 cut(s)	574, 904
MboI	GATC	2 cut(s)	572, 902
MflI	RGATCY	1 cut(s)	902
MhlI	GDGCHC	2 cut(s)	516, 811
Mph1103I	ATGCAT	1 cut(s)	1110
MseI	TTAA	4 cut(s)	441, 485, 491, 1167
MspI	CCGG	2 cut(s)	129, 1257
MspR9I	CCNGG	5 cut(s)	72, 130, 288, 736, 1258
MvaI	CCWGG	3 cut(s)	72, 288, 736
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	276, 1268, 1357
NciI	CCSGG	2 cut(s)	130, 1258
NdeII	GATC	2 cut(s)	572, 902
NlaIII	CATG	8 cut(s)	380, 568, 820, 862, 1081, 1112, 1331, 1364
NlaIV	GGNNCC	7 cut(s)	122, 285, 360, 646, 1093, 1234, 1261
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	3 cut(s)	290, 657, 1010
NruI	TCGCGA	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	1110
NspI	RCATGY	2 cut(s)	380, 1112
PaeI	GCATGC	1 cut(s)	1112
PagI	TCATGA	1 cut(s)	1327
PceI	AGGCCT	1 cut(s)	1324
PfeI	GAWTC	3 cut(s)	623, 887, 1277
PflMI	CCANNNNNTGG	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	434
PpuMI	RGGWCCY	1 cut(s)	120
PsiI	TTATAA	2 cut(s)	1203, 1218
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	70, 286, 734
PspGI	CCWGG	3 cut(s)	70, 286, 734
PspN4I	GGNNCC	7 cut(s)	122, 285, 360, 646, 1093, 1234, 1261
PspPI	GGNCC	3 cut(s)	65, 120, 1260
PspPPI	RGGWCCY	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	902
RruI	TCGCGA	1 cut(s)	156
RsaI	GTAC	4 cut(s)	59, 360, 977, 1093
RsaNI	GTAC	4 cut(s)	58, 359, 976, 1092
SalI	GTCGAC	1 cut(s)	1180
SaqAI	TTAA	4 cut(s)	441, 485, 491, 1167
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	2 cut(s)	572, 902
Sau96I	GGNCC	3 cut(s)	65, 120, 1260
ScrFI	CCNGG	5 cut(s)	72, 130, 288, 736, 1258
SduI	GDGCHC	2 cut(s)	516, 811
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	4 cut(s)	496, 1095, 1132, 1162
SinI	GGWCC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
SphI	GCATGC	1 cut(s)	1112
SseBI	AGGCCT	1 cut(s)	1324
SsiI	CCGC	1 cut(s)	279
SspI	AATATT	2 cut(s)	439, 489
SspMI	CTAG	3 cut(s)	366, 570, 771
StuI	AGGCCT	1 cut(s)	1324
StyD4I	CCNGG	5 cut(s)	70, 128, 286, 734, 1256
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	4 cut(s)	609, 707, 1119, 1385
TaiI	ACGT	1 cut(s)	715
TaqI	TCGA	2 cut(s)	1181, 1387
TatI	WGTACW	2 cut(s)	57, 975
TfiI	GAWTC	3 cut(s)	623, 887, 1277
Tru1I	TTAA	4 cut(s)	441, 485, 491, 1167
Tru9I	TTAA	4 cut(s)	441, 485, 491, 1167
TscAI	CASTG	3 cut(s)	67, 475, 1124
TseFI	GTSAC	3 cut(s)	290, 657, 1010
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	3 cut(s)	290, 657, 1010
TspDTI	ATGAA	5 cut(s)	825, 836, 1041, 1094, 1236
TspGWI	ACGGA	4 cut(s)	300, 780, 1007, 1305
TspRI	CASTG	3 cut(s)	67, 475, 1124
Van91I	CCANNNNNTGG	1 cut(s)	204
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	4 cut(s)	455, 728, 793, 1005
XceI	RCATGY	2 cut(s)	380, 1112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1270
XmiI	GTMKAC	3 cut(s)	314, 709, 1181
XspI	CTAG	3 cut(s)	366, 570, 771
Zsp2I	ATGCAT	1 cut(s)	1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.