Rorug03G0231900

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006672
Physical Location & Seq
Forward (+)
21407583 .. 21407996
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0231900.1

Sequence Viewer

Length: 414 bp
ATGGTGCGTTCGAACAAAAGAAATAAAGGGAGTAGTTTGAAAGCCATAAAACTACCAAAACTTCCTTTTGATACCATCATTGAGATTTTGAGCTGGTTGCCAGTCGTGTCTTTGCTAAGGTGCAAGTGTGTGTGCAAGCAATGGTGTTCGTTGATTCAAGATGACAAGTTCGTTCTAAAACATATGGATCGAAGCCGTCCAACCGATCAGTTTTATCGTACCGCTGATGAAAAGTTCAAGTTAATTTCAACTTATGGAGGCTTGTGTTTGGAGAGAAGTCTAAGTAATTCTAGGGTTTTTCGTATCAGAAACCCTGCAGCCCAACAAGTGCTATACTTGCCTGATGGACCTGAGTATACTAACACCATGGATTTTGCTTTTAATTCATCTACTCGCGAGTGTAAAGTGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.86

Weight (kDa)

9.56

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 58 3.7e-11 F-box domain
F-box-like PF12937 19 - 61 5.6e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 356
AccII CGCG 1 cut(s) 396
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 195
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 4 cut(s) 40, 158, 238, 249
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
AlwI GGATC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 83, 338
BceAI ACGGC 1 cut(s) 180
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 366
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 329
Bsh1236I CGCG 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 11
Bsp143I GATC 2 cut(s) 187, 205
Bsp19I CCATGG 1 cut(s) 366
Bsp68I TCGCGA 1 cut(s) 396
BspACI CCGC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 146
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 187, 205
BssNAI GTATAC 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 366
Bst1107I GTATAC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 3 cut(s) 116, 281, 351
BstDSI CCRYGG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 2 cut(s) 190, 208
BstMBI GATC 2 cut(s) 187, 205
BstMWI GCNNNNNNNGC 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 329
BstZ17I GTATAC 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 366
BtuMI TCGCGA 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 367
CviJI RGCY 5 cut(s) 44, 93, 195, 261, 320
CviKI_1 RGCY 5 cut(s) 44, 93, 195, 261, 320
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 3 cut(s) 116, 281, 351
DpnI GATC 2 cut(s) 189, 207
DpnII GATC 2 cut(s) 187, 205
Eco130I CCWWGG 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 370
FaiI YATR 8 cut(s) 47, 183, 185, 255, 334, 357, 368, 412
FatI CATG 1 cut(s) 366
FauNDI CATATG 1 cut(s) 183
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 291
GluI GCNGC 1 cut(s) 318
Hin1II CATG 1 cut(s) 370
HinfI GANTC 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 357
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 2 cut(s) 158, 395
Hpy8I GTNNAC 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 123, 135, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 337
HpyF3I CTNAG 3 cut(s) 116, 281, 351
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 2 cut(s) 187, 205
LpnPI CCDG 5 cut(s) 79, 114, 327, 354, 363
Lsp1109I GCAGC 1 cut(s) 329
MaeI CTAG 1 cut(s) 291
MalI GATC 2 cut(s) 189, 207
MboI GATC 2 cut(s) 187, 205
MluCI AATT 3 cut(s) 243, 286, 382
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 1 cut(s) 251
MseI TTAA 2 cut(s) 242, 381
MspA1I CMGCKG 1 cut(s) 224
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 337
NcoI CCATGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 183
NdeII GATC 2 cut(s) 187, 205
NlaIII CATG 1 cut(s) 370
NruI TCGCGA 1 cut(s) 396
NspV TTCGAA 1 cut(s) 11
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 319
RruI TCGCGA 1 cut(s) 396
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 242, 381
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 187, 205
Sau96I GGNCC 1 cut(s) 347
SetI ASST 3 cut(s) 95, 122, 352
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 347
Sse9I AATT 3 cut(s) 243, 286, 382
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 366
TaqI TCGA 2 cut(s) 11, 190
TasI AATT 3 cut(s) 243, 286, 382
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 242, 381
Tru9I TTAA 2 cut(s) 242, 381
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 243, 375
VpaK11BI GGWCC 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 356
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.