Rorug03G0232000

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006672
Physical Location & Seq
Forward (+)
21409647 .. 21410168
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0232000.1

Sequence Viewer

Length: 522 bp
ATGCCAAAATTGGCACCAACAAATGCGCGCGGCGAGTTCGTGTTAAAAGTGCACTTCAGTGGAGTACGTAAGGTTGAAGGGGTTGCTCATTTGACCGAAATAATTAGAGTTAATGCACCAGATTATTACTTACAAGTTCAATCTTTGGATGTTTGGAGAGAATGTTTCACGCCTCAGGGAGTTTTCGTAGACCTGACAAAAGTTCGGGGTTATACTTGGAATAATTGCACGTCTGTTGTTGATATGACAGATGAAACCCTCAACATTTTAGCCTTGGAAGACTTTAAAGAACACAAGTGGAGTAAAAACAAAATCAAAATTCCCTTGAAAGTTCTGAAGGATTGTCATCCACATTTGAGGGACCGCACTGTTTCGGTTGCATTCGAATTACTATTTGGAGCGAGCTATGATTTTAAATATAATAAGAGAAAGGGGATAGTTACCAAGGCCACACTTAGACCTTCTGGGGAAAGATTACATAAGCCAAGGCTCATGACGCTTAGAGGAATGAAGTCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.96

Weight (kDa)

9.63

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 189
AccII CGCG 2 cut(s) 28, 30
AciI CCGC 2 cut(s) 30, 364
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 2 cut(s) 40, 356
AfaI GTAC 1 cut(s) 66
AgsI TTSAA 3 cut(s) 77, 140, 328
AjiI CACGTC 1 cut(s) 231
AjuI GAANNNNNNNTTGG 2 cut(s) 378, 410
AleI CACNNNNGTG 1 cut(s) 57
AluBI AGCT 1 cut(s) 405
AluI AGCT 1 cut(s) 405
Alw21I GWGCWC 1 cut(s) 54
Alw44I GTGCAC 1 cut(s) 50
AoxI GGCC 1 cut(s) 447
ApaLI GTGCAC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 318
AspLEI GCGC 2 cut(s) 28, 30
AspS9I GGNCC 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 384
AvaII GGWCC 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 54
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 2 cut(s) 15, 362
BpiI GAAGAC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 3 cut(s) 273, 444, 485
BsaXI ACNNNNNCTCC 4 cut(s) 148, 171, 178, 201
Bse21I CCTNAGG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 345
BseDI CCNNGG 3 cut(s) 273, 444, 485
BseGI GGATG 2 cut(s) 154, 346
BseJI GATNNNNATC 1 cut(s) 345
BseMII CTCAG 1 cut(s) 188
BsePI GCGCGC 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 54
Bsh1236I CGCG 2 cut(s) 28, 30
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 374
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 54
BspACI CCGC 2 cut(s) 30, 364
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 187
BspFNI CGCG 2 cut(s) 28, 30
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 2 cut(s) 15, 362
BspT104I TTCGAA 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 13
BssECI CCNNGG 3 cut(s) 273, 444, 485
BssHII GCGCGC 1 cut(s) 26
BssT1I CCWWGG 3 cut(s) 273, 444, 485
Bst4CI ACNGT 1 cut(s) 370
BstBAI YACGTR 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 28, 403
BstDEI CTNAG 3 cut(s) 174, 455, 500
BstF5I GGATG 2 cut(s) 154, 346
BstFNI CGCG 2 cut(s) 28, 30
BstHHI GCGC 2 cut(s) 28, 30
BstMWI GCNNNNNNNGC 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 54
BstSNI TACGTA 1 cut(s) 68
BstUI CGCG 2 cut(s) 28, 30
BstV2I GAAGAC 1 cut(s) 285
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 1 cut(s) 449
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 2 cut(s) 154, 346
BtsIMutI CAGTG 2 cut(s) 64, 366
Cac8I GCNNGC 2 cut(s) 28, 403
CciI TCATGA 1 cut(s) 492
CfoI GCGC 2 cut(s) 28, 30
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 505
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 493
CviJI RGCY 5 cut(s) 272, 405, 449, 484, 490
CviKI_1 RGCY 5 cut(s) 272, 405, 449, 484, 490
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 174, 455, 500
DraI TTTAAA 2 cut(s) 286, 415
Eco105I TACGTA 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 273, 444, 485
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 40, 356
Eco81I CCTNAGG 1 cut(s) 174
EcoT14I CCWWGG 3 cut(s) 273, 444, 485
ErhI CCWWGG 3 cut(s) 273, 444, 485
FaeI CATG 1 cut(s) 496
FaiI YATR 6 cut(s) 213, 245, 408, 420, 480, 494
FaqI GGGAC 1 cut(s) 374
FatI CATG 1 cut(s) 492
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 2 cut(s) 161, 333
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 2 cut(s) 27, 29
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 449
HgaI GACGC 1 cut(s) 505
HhaI GCGC 2 cut(s) 28, 30
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 2 cut(s) 26, 28
HinP1I GCGC 2 cut(s) 26, 28
Hpy166II GTNNAC 2 cut(s) 52, 190
Hpy188I TCNGA 2 cut(s) 336, 517
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 2 cut(s) 52, 190
HpyAV CCTTC 3 cut(s) 71, 331, 471
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 2 cut(s) 67, 230
HpyCH4V TGCA 4 cut(s) 52, 116, 228, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 496
HpyF3I CTNAG 3 cut(s) 174, 455, 500
HpySE526I ACGT 2 cut(s) 67, 230
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 2 cut(s) 26, 28
LmnI GCTCC 1 cut(s) 398
LpnPI CCDG 4 cut(s) 132, 161, 206, 450
MaeII ACGT 2 cut(s) 67, 230
MaeIII GTNAC 1 cut(s) 439
MboII GAAGA 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 5 cut(s) 8, 102, 223, 318, 386
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 4 cut(s) 183, 269, 351, 497
MseI TTAA 4 cut(s) 44, 111, 285, 414
MslI CAYNNNNRTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 380
MvnI CGCG 2 cut(s) 28, 30
MwoI GCNNNNNNNGC 1 cut(s) 496
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 2 cut(s) 15, 362
NspV TTCGAA 1 cut(s) 384
OliI CACNNNNGTG 1 cut(s) 57
PagI TCATGA 1 cut(s) 492
PauI GCGCGC 1 cut(s) 26
PctI GAATGC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 15, 362
PspPI GGNCC 1 cut(s) 361
PteI GCGCGC 1 cut(s) 26
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 4 cut(s) 44, 111, 285, 414
SatI GCNGC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 361
SduI GDGCHC 1 cut(s) 54
SetI ASST 6 cut(s) 70, 75, 195, 233, 407, 463
SfuI TTCGAA 1 cut(s) 384
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 57
SnaBI TACGTA 1 cut(s) 68
Sse9I AATT 5 cut(s) 8, 102, 223, 318, 386
SsiI CCGC 2 cut(s) 30, 364
StyI CCWWGG 3 cut(s) 273, 444, 485
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 2 cut(s) 70, 233
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 110
TasI AATT 5 cut(s) 8, 102, 223, 318, 386
TauI GCSGC 1 cut(s) 33
Tru1I TTAA 4 cut(s) 44, 111, 285, 414
Tru9I TTAA 4 cut(s) 44, 111, 285, 414
TscAI CASTG 2 cut(s) 64, 373
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 2 cut(s) 64, 373
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.