Rh3BG316000

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006672
Physical Location & Seq
Reverse (-)
32328759 .. 32332683
3925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG316000.1

Sequence Viewer

Length: 1062 bp
ATGGAACCTAAACCAGACCCGGATATTGATGATGATTTTAGCGAGCTGTACAAGGAGTACACTGGCCCTCCTGGGTCAAATGCCACAAACACACAAGACAGAGCAAAACCTAATAAGAGGTCCCTTGCTGGGTCTGATGAGGAAGAGGAAGCTCGCGACCCGAATGCTGTCCCGACTGATTTCACTAGCCGGGAAGCTAAGGTTTGGGAGGCAAAGTCAAAAGCTACTGAGAGGAATTGGAAGAAGAGGAAGGAAGAGGAACTGATTTGCAAAATATGCGGAGAATCGGGGCACTTTACTCAGGGGTGCCCATCTACTCTTGGAGCAAATCGCAAGTCTCAAGATTTCTTTGAAAGGGTACCTGCTAGAGAAAAGCATGTAAGAGCGCTTTTCACAGAGAAAGTGATAAACAGGATTGAAAAGGATATTGGCTGCAATATTAAGATGGACGAGAAATTCATCATTGTCAGTGGCAAAGATAGGTTAATATTAAGGAAAGGCGTGGATGCTGTGCACAAGATGATGAGAGAGGAAGGTGAACAACGGGGTAGTTCTCAAGTGACTAGATCAAGGTCACCCGAGCGAAGCCCTGTTGGTTCACGGTTACACCGCTCTGAATCCCAGAGGTCTCATTCTGGTCCTCGTAATGGATCAAACTTTCAACCAAGGTTTCACAGGCAGGAGAAGTTTGTTGAAGACCGTATACGTCAAAATATGCAAAAATTTTCCAGGGGTTCTCCACAAGCTTATGGTAATGACGGAGCTCGAGGTCGGCCAAGTCATTCAAATTCTCCAGCACGTGCCCCTTACATGGGCAACTCATATAATTCATATGATGGTCATAATCAGAGCATGGCCACTTATAGAAATGATGGATGGGAATCTGATAAAAAGGGATCTGATGTGCAATCTGGTCATCAGTTTGATTACCCAACCGTCCCACAGACATTAGAAGAATTAGAATTGGAGTACAAAAGAGAGGCGATGGAGCTTGGAAGAATTCGTGACAAAGAAGAAGATGAAGAAAATTACAAACATCGTGAGGTATGGATTACCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

40.63

Weight (kDa)

7.7

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1060
Acc36I ACCTGC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 358
AccB1I GGYRCC 2 cut(s) 306, 358
AccBSI CCGCTC 1 cut(s) 612
AccI GTMKAC 1 cut(s) 703
AccII CGCG 1 cut(s) 156
AciI CCGC 2 cut(s) 279, 610
AclWI GGATC 2 cut(s) 658, 904
AcoI YGGCCR 2 cut(s) 773, 855
AcsI RAATTY 4 cut(s) 455, 722, 787, 999
AcvI CACGTG 1 cut(s) 800
AfaI GTAC 4 cut(s) 50, 59, 360, 971
AfeI AGCGCT 1 cut(s) 387
AfiI CCNNNNNNNGG 4 cut(s) 129, 647, 811, 812
AgsI TTSAA 5 cut(s) 353, 419, 662, 695, 786
AjnI CCWGG 2 cut(s) 70, 728
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 7 cut(s) 46, 152, 197, 224, 746, 764, 991
AluI AGCT 7 cut(s) 46, 152, 197, 224, 746, 764, 991
Alw21I GWGCWC 2 cut(s) 516, 766
Alw26I GTCTC 2 cut(s) 342, 633
Alw44I GTGCAC 1 cut(s) 512
AlwI GGATC 2 cut(s) 658, 904
Ama87I CYCGRG 2 cut(s) 578, 765
Aor51HI AGCGCT 1 cut(s) 387
AoxI GGCC 3 cut(s) 64, 773, 855
ApaLI GTGCAC 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 432
ApoI RAATTY 4 cut(s) 455, 722, 787, 999
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
Asp718I GGTACC 1 cut(s) 358
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 3 cut(s) 65, 120, 638
AsuC2I CCSGG 2 cut(s) 20, 191
AsuHPI GGTGA 2 cut(s) 548, 567
AvaI CYCGRG 2 cut(s) 578, 765
AvaII GGWCC 2 cut(s) 120, 638
BaeGI GKGCMC 4 cut(s) 294, 311, 516, 805
BalI TGGCCA 1 cut(s) 857
BanI GGYRCC 2 cut(s) 306, 358
BanII GRGCYC 1 cut(s) 766
BarI GAAGNNNNNNTAC 2 cut(s) 687, 719
BbrPI CACGTG 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 2 cut(s) 516, 766
BbvI GCAGC 1 cut(s) 419
BccI CCATC 6 cut(s) 319, 439, 830, 866, 870, 979
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 2 cut(s) 72, 730
BcnI CCSGG 2 cut(s) 20, 191
BcoDI GTCTC 2 cut(s) 342, 633
BfaI CTAG 3 cut(s) 186, 366, 564
BfoI RGCGCY 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 1 cut(s) 433
BlsI GCNGC 1 cut(s) 434
Bme1390I CCNGG 4 cut(s) 20, 72, 191, 730
Bme18I GGWCC 2 cut(s) 120, 638
BmeT110I CYCGRG 2 cut(s) 578, 765
BmgT120I GGNCC 3 cut(s) 65, 120, 638
BmiI GGNNCC 4 cut(s) 6, 122, 308, 360
BmrFI CCNGG 4 cut(s) 20, 72, 191, 730
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 324, 540
BpuMI CCSGG 2 cut(s) 20, 191
BsaAI YACGTR 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 880
BsaI GGTCTC 1 cut(s) 633
BsaJI CCNNGG 3 cut(s) 71, 665, 729
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 200, 230
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 647, 811, 812
Bse1I ACTGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 880
BseBI CCWGG 2 cut(s) 72, 730
BseDI CCNNGG 3 cut(s) 71, 665, 729
BseGI GGATG 2 cut(s) 511, 881
BseJI GATNNNNATC 1 cut(s) 880
BseLI CCNNNNNNNGG 4 cut(s) 129, 647, 811, 812
BseMII CTCAG 2 cut(s) 219, 314
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 4 cut(s) 294, 311, 516, 805
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 3 cut(s) 66, 775, 857
BshNI GGYRCC 2 cut(s) 306, 358
BsiHKAI GWGCWC 2 cut(s) 516, 766
BsiHKCI CYCGRG 2 cut(s) 578, 765
BsiSI CCGG 2 cut(s) 20, 190
BslFI GGGAC 3 cut(s) 106, 155, 923
BslI CCNNNNNNNGG 4 cut(s) 129, 647, 811, 812
BsmAI GTCTC 2 cut(s) 342, 633
BsmFI GGGAC 3 cut(s) 106, 155, 923
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 3 cut(s) 66, 775, 857
Bso31I GGTCTC 1 cut(s) 633
BsoBI CYCGRG 2 cut(s) 578, 765
Bsp1286I GDGCHC 5 cut(s) 294, 311, 516, 766, 805
Bsp1407I TGTACA 1 cut(s) 48
Bsp143I GATC 3 cut(s) 566, 650, 896
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 2 cut(s) 279, 610
BspANI GGCC 3 cut(s) 66, 775, 857
BspCNI CTCAG 2 cut(s) 220, 313
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 4 cut(s) 6, 122, 308, 360
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 658, 904
BspT107I GGYRCC 2 cut(s) 306, 358
BspTNI GGTCTC 1 cut(s) 633
BsrBI CCGCTC 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 71, 665, 729
BssMI GATC 3 cut(s) 566, 650, 896
BssNAI GTATAC 1 cut(s) 704
BssT1I CCWWGG 1 cut(s) 665
Bst1107I GTATAC 1 cut(s) 704
Bst2UI CCWGG 2 cut(s) 72, 730
Bst4CI ACNGT 3 cut(s) 603, 701, 937
Bst6I CTCTTC 3 cut(s) 138, 239, 249
BstAPI GCANNNNNTGC 1 cut(s) 276
BstAUI TGTACA 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 800
BstC8I GCNNGC 2 cut(s) 44, 154
BstDEI CTNAG 3 cut(s) 198, 228, 300
BstEII GGTNACC 1 cut(s) 573
BstF5I GGATG 2 cut(s) 511, 881
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 3 cut(s) 569, 653, 899
BstMAI GTCTC 2 cut(s) 342, 633
BstMBI GATC 3 cut(s) 566, 650, 896
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstNI CCWGG 2 cut(s) 72, 730
BstNSI RCATGY 1 cut(s) 380
BstPI GGTNACC 1 cut(s) 573
BstSCI CCNGG 4 cut(s) 18, 70, 189, 728
BstSLI GKGCMC 4 cut(s) 294, 311, 516, 805
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 702
BstX2I RGATCY 1 cut(s) 896
BstYI RGATCY 1 cut(s) 896
BstZ17I GTATAC 1 cut(s) 704
BsuRI GGCC 3 cut(s) 66, 775, 857
BtgZI GCGATG 1 cut(s) 998
BtsCI GGATG 2 cut(s) 511, 881
BtsIMutI CAGTG 2 cut(s) 60, 475
BtuMI TCGCGA 1 cut(s) 156
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 44, 154
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 65, 120, 638
Csp6I GTAC 4 cut(s) 49, 58, 359, 970
CviAII CATG 3 cut(s) 377, 811, 853
CviQI GTAC 4 cut(s) 49, 58, 359, 970
DdeI CTNAG 3 cut(s) 198, 228, 300
DpnI GATC 3 cut(s) 568, 652, 898
DpnII GATC 3 cut(s) 566, 650, 896
EaeI YGGCCR 2 cut(s) 773, 855
Eam1104I CTCTTC 3 cut(s) 138, 239, 249
EarI CTCTTC 3 cut(s) 138, 239, 249
Ecl136II GAGCTC 1 cut(s) 764
Eco130I CCWWGG 1 cut(s) 665
Eco24I GRGCYC 1 cut(s) 766
Eco31I GGTCTC 1 cut(s) 633
Eco47I GGWCC 2 cut(s) 120, 638
Eco47III AGCGCT 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 764
Eco72I CACGTG 1 cut(s) 800
Eco88I CYCGRG 2 cut(s) 578, 765
Eco91I GGTNACC 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 120
EcoO65I GGTNACC 1 cut(s) 573
EcoRI GAATTC 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 70, 728
EcoT14I CCWWGG 1 cut(s) 665
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 665
FaeI CATG 3 cut(s) 380, 814, 856
FaqI GGGAC 3 cut(s) 106, 155, 923
FatI CATG 3 cut(s) 376, 810, 852
FauNDI CATATG 1 cut(s) 832
FblI GTMKAC 1 cut(s) 703
Fnu4HI GCNGC 1 cut(s) 433
FokI GGATG 2 cut(s) 518, 888
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 1 cut(s) 433
FspBI CTAG 3 cut(s) 186, 366, 564
GlaI GCGC 1 cut(s) 387
GluI GCNGC 1 cut(s) 433
GsaI CCCAGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 777
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 3 cut(s) 66, 775, 857
HapII CCGG 2 cut(s) 20, 190
HhaI GCGC 1 cut(s) 388
Hin1II CATG 3 cut(s) 380, 814, 856
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 3 cut(s) 284, 617, 881
HpaII CCGG 2 cut(s) 20, 190
HphI GGTGA 2 cut(s) 548, 567
Hpy166II GTNNAC 5 cut(s) 60, 514, 539, 599, 704
Hpy188I TCNGA 5 cut(s) 136, 616, 849, 886, 901
Hpy188III TCNNGA 5 cut(s) 155, 172, 341, 1004, 1040
Hpy8I GTNNAC 5 cut(s) 60, 514, 539, 599, 704
HpyAV CCTTC 2 cut(s) 244, 527
HpyCH4III ACNGT 3 cut(s) 603, 701, 937
HpyCH4IV ACGT 2 cut(s) 706, 799
HpyCH4V TGCA 5 cut(s) 270, 435, 514, 718, 907
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 3 cut(s) 198, 228, 300
HpySE526I ACGT 2 cut(s) 706, 799
Hsp92II CATG 3 cut(s) 380, 814, 856
HspAI GCGC 1 cut(s) 386
KpnI GGTACC 1 cut(s) 362
Kzo9I GATC 3 cut(s) 566, 650, 896
LmnI GCTCC 3 cut(s) 323, 761, 988
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 496
MaeI CTAG 3 cut(s) 186, 366, 564
MaeII ACGT 2 cut(s) 706, 799
MaeIII GTNAC 4 cut(s) 559, 573, 603, 1004
MalI GATC 3 cut(s) 568, 652, 898
MbiI CCGCTC 1 cut(s) 612
MboI GATC 3 cut(s) 566, 650, 896
MflI RGATCY 1 cut(s) 896
MhlI GDGCHC 5 cut(s) 294, 311, 516, 766, 805
MlsI TGGCCA 1 cut(s) 857
MluCI AATT 9 cut(s) 235, 455, 722, 787, 826, 956, 962, 999, 1027
MluNI TGGCCA 1 cut(s) 857
Mox20I TGGCCA 1 cut(s) 857
MscI TGGCCA 1 cut(s) 857
MseI TTAA 3 cut(s) 441, 485, 491
Msp20I TGGCCA 1 cut(s) 857
MspI CCGG 2 cut(s) 20, 190
MspR9I CCNGG 4 cut(s) 20, 72, 191, 730
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 2 cut(s) 72, 730
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 276
NciI CCSGG 2 cut(s) 20, 191
NdeI CATATG 1 cut(s) 832
NdeII GATC 3 cut(s) 566, 650, 896
NlaIII CATG 3 cut(s) 380, 814, 856
NlaIV GGNNCC 4 cut(s) 6, 122, 308, 360
NmuCI GTSAC 3 cut(s) 559, 573, 1004
NruI TCGCGA 1 cut(s) 156
NspI RCATGY 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 765
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 3 cut(s) 284, 617, 881
PkrI GCNGC 1 cut(s) 434
PmaCI CACGTG 1 cut(s) 800
PmlI CACGTG 1 cut(s) 800
Ppu21I YACGTR 1 cut(s) 800
PpuMI RGGWCCY 1 cut(s) 120
PsiI TTATAA 1 cut(s) 1060
Psp124BI GAGCTC 1 cut(s) 766
Psp5II RGGWCCY 1 cut(s) 120
Psp6I CCWGG 2 cut(s) 70, 728
PspCI CACGTG 1 cut(s) 800
PspEI GGTNACC 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 128
PspGI CCWGG 2 cut(s) 70, 728
PspN4I GGNNCC 4 cut(s) 6, 122, 308, 360
PspPI GGNCC 3 cut(s) 65, 120, 638
PspPPI RGGWCCY 1 cut(s) 120
PspXI VCTCGAGB 1 cut(s) 765
PsuI RGATCY 1 cut(s) 896
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 4 cut(s) 50, 59, 360, 971
RsaNI GTAC 4 cut(s) 49, 58, 359, 970
SacI GAGCTC 1 cut(s) 766
SaqAI TTAA 3 cut(s) 441, 485, 491
SatI GCNGC 1 cut(s) 433
Sau3AI GATC 3 cut(s) 566, 650, 896
Sau96I GGNCC 3 cut(s) 65, 120, 638
ScrFI CCNGG 4 cut(s) 20, 72, 191, 730
SduI GDGCHC 5 cut(s) 294, 311, 516, 766, 805
SfaNI GCATC 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 765
SinI GGWCC 2 cut(s) 120, 638
SlaI CTCGAG 1 cut(s) 765
SmlI CTYRAG 3 cut(s) 339, 555, 765
SmoI CTYRAG 3 cut(s) 339, 555, 765
Sse9I AATT 9 cut(s) 235, 455, 722, 787, 826, 956, 962, 999, 1027
SsiI CCGC 2 cut(s) 279, 610
SspI AATATT 2 cut(s) 439, 489
SspMI CTAG 3 cut(s) 186, 366, 564
SstI GAGCTC 1 cut(s) 766
StyD4I CCNGG 4 cut(s) 18, 70, 189, 728
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 3 cut(s) 603, 701, 937
TaiI ACGT 2 cut(s) 709, 802
TaqI TCGA 1 cut(s) 766
TasI AATT 9 cut(s) 235, 455, 722, 787, 826, 956, 962, 999, 1027
TatI WGTACW 3 cut(s) 48, 57, 969
TfiI GAWTC 3 cut(s) 284, 617, 881
Tru1I TTAA 3 cut(s) 441, 485, 491
Tru9I TTAA 3 cut(s) 441, 485, 491
TscAI CASTG 2 cut(s) 67, 475
TseFI GTSAC 3 cut(s) 559, 573, 1004
TseI GCWGC 1 cut(s) 432
Tsp45I GTSAC 3 cut(s) 559, 573, 1004
TspDTI ATGAA 3 cut(s) 448, 819, 1035
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 2 cut(s) 67, 475
VneI GTGCAC 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 120, 638
XapI RAATTY 4 cut(s) 455, 722, 787, 999
XceI RCATGY 1 cut(s) 380
XhoI CTCGAG 1 cut(s) 765
XmiI GTMKAC 1 cut(s) 703
XspI CTAG 3 cut(s) 186, 366, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.