Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008248

Physical Location & Seq

Genomic Coordinates Reverse (-)

3786982 .. 3790493

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G053800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATGCAGTCAAGGGTGGTGGCATTGGAGGAAGGCAAGGACCCTGCTACTGCATTTAAATCCAGCCATGCTAGGGCCTTGCCTTTGAGACTAGTTCAATTTCTTGTGATGTTTGTAGTTCTGGGTATCGGGGTTTCGATTTTGAGTATGCACACAATTCGGTTTTTTGGAGTTCAACATGTGGCTCCAACAGCACCATCCACTATTAGGCCTTGCTTTGAAGAGCCAAATAGTTTAGAAAGCCGGATTAGACCTCCATCTAATCTGTTGCACGCCATGAATGACACGGAGTTGCTTTGGCTGGCTTCATCTGCTCCTCAAATAAACGACTATCCTTTTAAAAGAGTTCCCAAGATTGCTTTCATGTTCTTAACTAAGGGACCATTGCCAATGGAACCTCTTTGGGAGCGGTTTTTTAAAGGACACAAAGGGCTTTACTCAATCTACGTCCATTCACTGCCATCTTATAACGCTAATTTCTCGCCTTCGTCAGTGTTTCACAAGAGACAAATCCCGAGCCAGGTAGCAGAGTGGGGAGAGATGAGTATGTGTGATGCTGAGAGGAGACTCCTAGCTAATGCGTTGCTTGACATCTCAAATGAATGGTTTGTCCTCCTTTCTGAGGCATGTATTCCTCTCTACAACTTAAGCATTGTCTATCACTACTTATCAAGATCCAGGTACAGCTTTATGGGTTCATTTGATGAAATTGGGCCATATGGGAGAGGACGCTATGACGGGCGCATGGCCCCTTTGGTCAATCTCACTGAGTGGCGTAAAGGGTCTCAGTGGTTTGAGATTAATCGGAAACTTGCAGTTAGAATTGTAGGAGACACAACTTACTACCCTAAGTTCAGAGACTTTTGCAAACCAGCATGTTATGTGGATGAGCACTACTTTCAGACAATGCTTAGCATCGAGACTCCACATCTTTTGGCAAACAGGACCCTTACTTATGTGGACTGGTCAAGAGGTGGTGCTCATCCAGCTACATTCGGCAAAGCTGATGTTACAGAGGAGTTCTTCAAGAAAATTGCTGGAAGTGACACATGTCTTTACAACAACCAGCCAACCTCACTCTGTTTTCTTTTTGCAAGAAAGTTTGCCCCAAGTGCTTTGGAACCTCTATTAGAATTAGCATCCAAAGTATTTGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

387

Amino Acids

44.03

Weight (kDa)

8.84

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21310 AT3G21310 AT3G21310
fragaria_vesca	FvH4_6g32820 FvH4_6g32820 FvH4_6g32820
malus_domestica	MD09G1197900.v1.1 MD17G1178800.v1.1
prunus_persica	Prupe.3G053800_v2.0.a1 Prupe.3G053800_v2.0.a1 Prupe.3G053800_v2.0.a1
pyrus_communis	pycom09g11460
rosa_chinensis	RchiOBHm_Chr2g0142011
rosa_laevigata	RLG00000019946
rosa_multiflora	Rmu_sc0004757.1_g000009
rosa_roxburghii	Rroxscaffold_2G00103660
rosa_rugosa	Rorug02G0369700 Rorug02G0369800
rosa_samantha	Rh2AG422300 Rh2BG432600 Rh2CG409300 Rh2DG442300
rosa_wichuraiana	Rw2G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AccBSI	CCGCTC	1 cut(s)	409
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	1 cut(s)	669
AdeI	CACNNNGTG	1 cut(s)	771
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	4 cut(s)	73, 207, 520, 622
AflII	CTTAAG	1 cut(s)	646
AflIII	ACRYGT	2 cut(s)	178, 1049
AgsI	TTSAA	4 cut(s)	98, 176, 221, 1027
AhlI	ACTAGT	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	519, 677
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	4 cut(s)	575, 687, 989, 1004
AluI	AGCT	4 cut(s)	575, 687, 989, 1004
Alw21I	GWGCWC	2 cut(s)	894, 982
Alw26I	GTCTC	7 cut(s)	82, 499, 559, 789, 825, 852, 914
AlwI	GGATC	1 cut(s)	669
Ama87I	CYCGRG	1 cut(s)	514
AoxI	GGCC	4 cut(s)	75, 209, 713, 747
AseI	ATTAAT	1 cut(s)	801
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	6 cut(s)	40, 75, 380, 713, 748, 945
AvaI	CYCGRG	1 cut(s)	514
AvaII	GGWCC	3 cut(s)	40, 380, 945
Bbv12I	GWGCWC	2 cut(s)	894, 982
BccI	CCATC	3 cut(s)	205, 265, 469
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	2 cut(s)	521, 679
BcoDI	GTCTC	7 cut(s)	82, 499, 559, 789, 825, 852, 914
BcuI	ACTAGT	1 cut(s)	91
BfaI	CTAG	3 cut(s)	72, 92, 572
BfrI	CTTAAG	1 cut(s)	646
BlpI	GCTNAGC	1 cut(s)	911
Bme1390I	CCNGG	2 cut(s)	521, 679
Bme18I	GGWCC	3 cut(s)	40, 380, 945
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	6 cut(s)	40, 75, 380, 713, 748, 945
BmiI	GGNNCC	7 cut(s)	42, 186, 381, 396, 750, 947, 1122
BmrFI	CCNGG	2 cut(s)	521, 679
BmsI	GCATC	3 cut(s)	544, 924, 1148
BoxI	GACNNNNGTC	1 cut(s)	1050
Bpu1102I	GCTNAGC	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	789
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 207, 520, 622
Bse1I	ACTGG	1 cut(s)	968
Bse3DI	GCAATG	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	521, 679
BseGI	GGATG	4 cut(s)	197, 892, 982, 1139
BseLI	CCNNNNNNNGG	4 cut(s)	73, 207, 520, 622
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	4 cut(s)	549, 612, 759, 800
BseNI	ACTGG	1 cut(s)	968
BseRI	GAGGAG	3 cut(s)	306, 577, 1031
BshFI	GGCC	4 cut(s)	77, 211, 715, 749
BsiHKAI	GWGCWC	2 cut(s)	894, 982
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	4 cut(s)	73, 207, 520, 622
BsmAI	GTCTC	7 cut(s)	82, 499, 559, 789, 825, 852, 914
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	77, 211, 715, 749
Bso31I	GGTCTC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	514
Bsp1286I	GDGCHC	2 cut(s)	894, 982
Bsp143I	GATC	1 cut(s)	674
Bsp1720I	GCTNAGC	1 cut(s)	911
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	4 cut(s)	77, 211, 715, 749
BspCNI	CTCAG	4 cut(s)	550, 613, 760, 799
BspLI	GGNNCC	7 cut(s)	42, 186, 381, 396, 750, 947, 1122
BspPI	GGATC	1 cut(s)	669
BspQI	GCTCTTC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	789
BsrBI	CCGCTC	1 cut(s)	409
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	968
BssMI	GATC	1 cut(s)	674
Bst2UI	CCWGG	2 cut(s)	521, 679
Bst6I	CTCTTC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	273, 303
BstDEI	CTNAG	7 cut(s)	375, 558, 621, 768, 786, 849, 911
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	4 cut(s)	197, 892, 982, 1139
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	1 cut(s)	677
BstMAI	GTCTC	7 cut(s)	82, 499, 559, 789, 825, 852, 914
BstMBI	GATC	1 cut(s)	674
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 311, 986, 1112
BstNI	CCWGG	2 cut(s)	521, 679
BstNSI	RCATGY	4 cut(s)	182, 630, 879, 1053
BstPAI	GACNNNNGTC	1 cut(s)	1050
BstSCI	CCNGG	2 cut(s)	519, 677
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	4 cut(s)	77, 211, 715, 749
BtsCI	GGATG	4 cut(s)	197, 892, 982, 1139
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	4 cut(s)	455, 498, 765, 794
Cac8I	GCNNGC	2 cut(s)	273, 303
CfoI	GCGC	1 cut(s)	744
Cfr13I	GGNCC	6 cut(s)	40, 75, 380, 713, 748, 945
CseI	GACGC	1 cut(s)	738
Csp6I	GTAC	1 cut(s)	682
CspCI	CAANNNNNGTGG	3 cut(s)	35, 915, 950
CviAII	CATG	8 cut(s)	68, 179, 277, 364, 627, 745, 876, 1050
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	7 cut(s)	375, 558, 621, 768, 786, 849, 911
DpnI	GATC	1 cut(s)	676
DpnII	GATC	1 cut(s)	674
DraI	TTTAAA	3 cut(s)	58, 340, 418
DraIII	CACNNNGTG	1 cut(s)	771
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	789
Eco47I	GGWCC	3 cut(s)	40, 380, 945
Eco88I	CYCGRG	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoO109I	RGGNCCY	3 cut(s)	40, 75, 945
EcoRII	CCWGG	2 cut(s)	519, 677
FaeI	CATG	8 cut(s)	71, 182, 280, 367, 630, 748, 879, 1053
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	8 cut(s)	67, 178, 276, 363, 626, 744, 875, 1049
FauNDI	CATATG	1 cut(s)	718
FokI	GGATG	4 cut(s)	184, 899, 969, 1126
FspBI	CTAG	3 cut(s)	72, 92, 572
GlaI	GCGC	1 cut(s)	743
HaeIII	GGCC	4 cut(s)	77, 211, 715, 749
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	738
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	8 cut(s)	71, 182, 280, 367, 630, 748, 879, 1053
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	2 cut(s)	567, 922
HpaII	CCGG	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	961
Hpy188I	TCNGA	4 cut(s)	622, 807, 857, 903
Hpy188III	TCNNGA	5 cut(s)	514, 672, 919, 969, 1027
Hpy8I	GTNNAC	1 cut(s)	961
HpyAV	CCTTC	2 cut(s)	26, 495
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	7 cut(s)	7, 53, 151, 271, 815, 867, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 311, 986, 1112
HpyF3I	CTNAG	7 cut(s)	375, 558, 621, 768, 786, 849, 911
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	8 cut(s)	71, 182, 280, 367, 630, 748, 879, 1053
HspAI	GCGC	1 cut(s)	742
Kzo9I	GATC	1 cut(s)	674
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	190, 319, 406
LweI	GCATC	3 cut(s)	544, 924, 1148
MaeI	CTAG	3 cut(s)	72, 92, 572
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	1009, 1043
MalI	GATC	1 cut(s)	676
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	1 cut(s)	674
MboII	GAAGA	2 cut(s)	233, 1015
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	2 cut(s)	894, 982
MluCI	AATT	7 cut(s)	98, 156, 475, 708, 822, 1032, 1133
MlyI	GAGTC	2 cut(s)	561, 916
MmeI	TCCRAC	1 cut(s)	212
MseI	TTAA	6 cut(s)	57, 339, 371, 417, 647, 801
MspCI	CTTAAG	1 cut(s)	646
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	521, 679
MvaI	CCWGG	2 cut(s)	521, 679
MwoI	GCNNNNNNNGC	4 cut(s)	191, 311, 986, 1112
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	1 cut(s)	674
NlaIII	CATG	8 cut(s)	71, 182, 280, 367, 630, 748, 879, 1053
NlaIV	GGNNCC	7 cut(s)	42, 186, 381, 396, 750, 947, 1122
NmuCI	GTSAC	1 cut(s)	1043
NspI	RCATGY	4 cut(s)	182, 630, 879, 1053
PceI	AGGCCT	1 cut(s)	211
PciI	ACATGT	2 cut(s)	178, 1049
PciSI	GCTCTTC	1 cut(s)	216
PleI	GAGTC	2 cut(s)	561, 916
PpsI	GAGTC	2 cut(s)	561, 916
PpuMI	RGGWCCY	2 cut(s)	40, 945
PscI	ACATGT	2 cut(s)	178, 1049
PshAI	GACNNNNGTC	1 cut(s)	1050
PshBI	ATTAAT	1 cut(s)	801
PsiI	TTATAA	1 cut(s)	468
Psp5II	RGGWCCY	2 cut(s)	40, 945
Psp6I	CCWGG	2 cut(s)	519, 677
PspGI	CCWGG	2 cut(s)	519, 677
PspN4I	GGNNCC	7 cut(s)	42, 186, 381, 396, 750, 947, 1122
PspPI	GGNCC	6 cut(s)	40, 75, 380, 713, 748, 945
PspPPI	RGGWCCY	2 cut(s)	40, 945
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	6 cut(s)	57, 339, 371, 417, 647, 801
Sau3AI	GATC	1 cut(s)	674
Sau96I	GGNCC	6 cut(s)	40, 75, 380, 713, 748, 945
SchI	GAGTC	2 cut(s)	561, 916
ScrFI	CCNGG	2 cut(s)	521, 679
SduI	GDGCHC	2 cut(s)	894, 982
SfaNI	GCATC	3 cut(s)	544, 924, 1148
SinI	GGWCC	3 cut(s)	40, 380, 945
SmiI	ATTTAAAT	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	646
SmoI	CTYRAG	1 cut(s)	646
SpeI	ACTAGT	1 cut(s)	91
Sse9I	AATT	7 cut(s)	98, 156, 475, 708, 822, 1032, 1133
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	409
SspMI	CTAG	3 cut(s)	72, 92, 572
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	519, 677
SwaI	ATTTAAAT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	2 cut(s)	137, 918
TasI	AATT	7 cut(s)	98, 156, 475, 708, 822, 1032, 1133
Tru1I	TTAA	6 cut(s)	57, 339, 371, 417, 647, 801
Tru9I	TTAA	6 cut(s)	57, 339, 371, 417, 647, 801
TscAI	CASTG	4 cut(s)	462, 498, 772, 794
TseFI	GTSAC	1 cut(s)	1043
Tsp45I	GTSAC	1 cut(s)	1043
TspDTI	ATGAA	6 cut(s)	293, 297, 352, 615, 687, 720
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	4 cut(s)	462, 498, 772, 794
Vha464I	CTTAAG	1 cut(s)	646
VpaK11BI	GGWCC	3 cut(s)	40, 380, 945
VspI	ATTAAT	1 cut(s)	801
XagI	CCTNNNNNAGG	1 cut(s)	620
XceI	RCATGY	4 cut(s)	182, 630, 879, 1053
XspI	CTAG	3 cut(s)	72, 92, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.