Prupe.3G125200_v2.0.a1

Sodium/calcium exchanger protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
11504627 .. 11509235
4609 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G125200.1

Sequence Viewer

Length: 1728 bp
ATGGCAAAGAAACTCACACTCCTTTTGCTAGCCATCTTGTTACTTCAACAAGCCAGCTCCGGCGAAAGTCGGTCCATAACAAACGACTTGCCGTTGAGCATGGTCTCCGATGGAGTACTCGAAAAAACTCCGAAACCAAATTCCATTTGGCTGCCGGGCCGCTTGTTCTCTTCAGATAGTTGTGACCAGACATACGGGTTCTTGCCATGCACAACCACAGTTTTGGGAAATACTTTCCTGATCATCGTTTATGGCTACTTGATGTTTCTATCAGCCAAGCTGTTGTCTAATGGAAGTGAGATTCTGCTGCAGATTTTAGGGCCTGGTATCGTTGGTGGTTTCTTCCTGCCTCTTTTGAGCTCTATACCTGATGCCACCATTATTCTTGCATCTGGACTTTCTGGAGACACAGAAACGGCTCAAAGTCAGGTCTCTGTGGGAATGGGCTTGCTAGCTGGATCAAATGTTATGCTTCTAACAATTCTATGGGGCACCTGTCTCCTAGTTGGCAAATGTGACCTTGAAAATTCAGTTGCAGTTGATCAAAAAGATGAAAAACGATTTAGCTTAACTGGATCTGGAGTGAGCACAGATATTTGGACAAGCTATGCTGCAAGGATCATGGTTTTCTCTATTATTCCTTTTGTAATTGTCCAATTACCCCAAGTTTTTCACAGAACTTCTGACAATCGCTTAGCAATTCTGATTTCGCTCATCGTCGCCATCTCCTTTGTGATTGCTTATAGCCTCTATCAGGTCTTTCAGCCATGGATTCAGAAGAGAAAACTTGCATTATCAAAGCATAAGCATGTGATGTCAGAAATTCTAATACAGTTGAAAACAAATGCTCTGGGAAGACTTCTTACAAATGATGGTGATCCTAACAAAGTTGTTATAGAAAAGTTGTTCAAGACACTTGATCAGGATTCGGATGGTTATCTAAGTACCGCAGACTTAAGATCTCTGATTATAGGAATCCAGTTTGACGATATGGACATAAACATCGATGAAGCAATTTCACAAGTGATGAGAGATTTTGATACATCTCATGACTCAAAGATTGATGTGGATGAATTTTTCAAGGGTATCTCGAGATGGATCAACAAGGCTAAGCGTGTCGCAATAATGGAGCGTGGAAAGCTTCCACCATCGATGAAACTGTTAGAGGATTTTGATAAGAAAACAAAGAAAGAGCAGGATCAGTTTATGGATCAAATGGATGAGGTTGTGGAGGATGTTAAAAATGTCAAGTGGCATGCTTCCAAAGCAGTAGGGTTGCTACTTCTGGGAACTATAGTTGCTGCAGTGTTTGCTGATCCACTTGTTGATGCTGTTGACAACTTCTCAACTGCTACGAGTATCCCTTCGTTCTTCGTCTCATTCGTCATTCTACCTTTTGCTAGCTCCAGTGAGATAGTCTCCACTCTAATTTTCGTCAGCCGGAAAAAGCAGAGAACTGCCTCATTGGCATACTCTGAGATATATGGCTCAGTAACAATGAGCAACATCCTTTCCCTGGCAGTTTTCTTGGGTCTGGTTTACATTCGCAACCTGACGTGGAGCTTTTCTGCTGAAGTTCTCGTTATTGTAGTTGTCTGCATTCTAATGGGTGCCATTGCCAGTTTCCGCACCACCTTCCCCCTTTGGATGTCTCTGGTGGCTATGCTGCTTTATCCACTTTCTCTGTTGCTGGTTTATATTCTTGACTATGTATTTGGGTGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

576

Amino Acids

63.45

Weight (kDa)

5.56

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015661)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 491, 1610
AciI CCGC 3 cut(s) 160, 948, 1627
AclWI GGATC 8 cut(s) 466, 583, 626, 872, 1106, 1206, 1218, 1310
AcsI RAATTY 4 cut(s) 139, 526, 822, 1073
AcuI CTGAAG 2 cut(s) 156, 1593
AfaI GTAC 2 cut(s) 117, 946
AfiI CCNNNNNNNGG 2 cut(s) 754, 1516
AflII CTTAAG 1 cut(s) 955
AgsI TTSAA 5 cut(s) 47, 524, 838, 910, 1081
AjiI CACGTC 1 cut(s) 1557
AjnI CCWGG 2 cut(s) 322, 1515
AluBI AGCT 9 cut(s) 57, 280, 360, 455, 567, 606, 1141, 1404, 1563
AluI AGCT 9 cut(s) 57, 280, 360, 455, 567, 606, 1141, 1404, 1563
Alw21I GWGCWC 2 cut(s) 362, 590
Alw26I GTCTC 7 cut(s) 109, 399, 436, 503, 1381, 1423, 1656
AlwI GGATC 8 cut(s) 466, 583, 626, 872, 1106, 1206, 1218, 1310
Ama87I CYCGRG 1 cut(s) 1090
AoxI GGCC 2 cut(s) 157, 320
ApeKI GCWGC 5 cut(s) 151, 307, 611, 1301, 1666
ApoI RAATTY 4 cut(s) 139, 526, 822, 1073
ArsI GACNNNNNNTTYG 1 cut(s) 1697
AspS9I GGNCC 3 cut(s) 72, 157, 320
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 887
AsuNHI GCTAGC 3 cut(s) 28, 451, 1400
AvaI CYCGRG 1 cut(s) 1090
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 494
BanI GGYRCC 2 cut(s) 491, 1610
BanII GRGCYC 1 cut(s) 362
BarI GAAGNNNNNNTAC 2 cut(s) 847, 879
BbsI GAAGAC 1 cut(s) 862
Bbv12I GWGCWC 2 cut(s) 362, 590
BbvI GCAGC 5 cut(s) 138, 294, 598, 1288, 1653
BccI CCATC 7 cut(s) 41, 104, 731, 866, 926, 1089, 1156
BceAI ACGGC 2 cut(s) 76, 432
BciT130I CCWGG 2 cut(s) 324, 1517
BciVI GTATCC 1 cut(s) 1370
BclI TGATCA 3 cut(s) 240, 541, 919
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 7 cut(s) 109, 399, 436, 503, 1381, 1423, 1656
BfaI CTAG 4 cut(s) 29, 452, 503, 1401
BfmI CTRYAG 3 cut(s) 308, 1293, 1302
BfrI CTTAAG 1 cut(s) 955
BfuI GTATCC 1 cut(s) 1370
BglI GCCNNNNNGGC 1 cut(s) 1466
BglII AGATCT 1 cut(s) 959
BisI GCNGC 6 cut(s) 152, 160, 308, 612, 1302, 1667
BlpI GCTNAGC 2 cut(s) 694, 1110
BlsI GCNGC 6 cut(s) 153, 161, 309, 613, 1303, 1668
BmcAI AGTACT 1 cut(s) 117
Bme1390I CCNGG 3 cut(s) 156, 324, 1517
Bme18I GGWCC 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 1090
BmgBI CACGTC 1 cut(s) 1557
BmgT120I GGNCC 3 cut(s) 72, 157, 320
BmiI GGNNCC 2 cut(s) 493, 1612
BmrFI CCNGG 3 cut(s) 156, 324, 1517
BmsI GCATC 3 cut(s) 361, 398, 1318
BmtI GCTAGC 3 cut(s) 32, 455, 1404
BpiI GAAGAC 1 cut(s) 862
BplI GAGNNNNNCTC 2 cut(s) 1403, 1435
BpmI CTGGAG 3 cut(s) 423, 600, 1390
Bpu1102I GCTNAGC 2 cut(s) 694, 1110
BpuMI CCSGG 1 cut(s) 156
Bsa29I ATCGAT 2 cut(s) 1005, 1151
BsaBI GATNNNNATC 2 cut(s) 876, 936
BsaI GGTCTC 2 cut(s) 109, 436
BsaJI CCNNGG 2 cut(s) 767, 1515
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 754, 1516
Bse1I ACTGG 4 cut(s) 577, 979, 1407, 1620
Bse3DI GCAATG 1 cut(s) 1614
Bse8I GATNNNNATC 2 cut(s) 876, 936
BseBI CCWGG 2 cut(s) 324, 1517
BseCI ATCGAT 2 cut(s) 1005, 1151
BseDI CCNNGG 2 cut(s) 767, 1515
BseGI GGATG 6 cut(s) 937, 1075, 1225, 1240, 1506, 1653
BseJI GATNNNNATC 2 cut(s) 876, 936
BseLI CCNNNNNNNGG 2 cut(s) 754, 1516
BseMI GCAATG 1 cut(s) 1614
BseMII CTCAG 2 cut(s) 1467, 1503
BseNI ACTGG 4 cut(s) 577, 979, 1407, 1620
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 5 cut(s) 138, 294, 598, 1288, 1653
BshFI GGCC 2 cut(s) 159, 322
BshNI GGYRCC 2 cut(s) 491, 1610
BshVI ATCGAT 2 cut(s) 1005, 1151
BsiHKAI GWGCWC 2 cut(s) 362, 590
BsiHKCI CYCGRG 1 cut(s) 1090
BsiSI CCGG 3 cut(s) 60, 155, 1441
BslI CCNNNNNNNGG 2 cut(s) 754, 1516
BsmAI GTCTC 7 cut(s) 109, 399, 436, 503, 1381, 1423, 1656
BsmBI CGTCTC 1 cut(s) 1381
BsmI GAATGC 1 cut(s) 1599
BsnI GGCC 2 cut(s) 159, 322
Bso31I GGTCTC 2 cut(s) 109, 436
BsoBI CYCGRG 1 cut(s) 1090
Bsp1286I GDGCHC 3 cut(s) 362, 494, 590
Bsp1720I GCTNAGC 2 cut(s) 694, 1110
Bsp19I CCATGG 1 cut(s) 767
BspACI CCGC 3 cut(s) 160, 948, 1627
BspANI GGCC 2 cut(s) 159, 322
BspCNI CTCAG 2 cut(s) 1468, 1502
BspDI ATCGAT 2 cut(s) 1005, 1151
BspHI TCATGA 1 cut(s) 1048
BspLI GGNNCC 2 cut(s) 493, 1612
BspMAI CTGCAG 2 cut(s) 312, 1306
BspOI GCTAGC 3 cut(s) 32, 455, 1404
BspPI GGATC 8 cut(s) 466, 583, 626, 872, 1106, 1206, 1218, 1310
BspT107I GGYRCC 2 cut(s) 491, 1610
BspTI CTTAAG 1 cut(s) 955
BspTNI GGTCTC 2 cut(s) 109, 436
BsrDI GCAATG 1 cut(s) 1614
BsrI ACTGG 4 cut(s) 577, 979, 1407, 1620
BssECI CCNNGG 2 cut(s) 767, 1515
BssT1I CCWWGG 1 cut(s) 767
Bst2UI CCWGG 2 cut(s) 324, 1517
Bst4CI ACNGT 3 cut(s) 220, 834, 1161
Bst6I CTCTTC 2 cut(s) 175, 773
BstAFI CTTAAG 1 cut(s) 955
BstAPI GCANNNNNTGC 1 cut(s) 1310
BstC8I GCNNGC 6 cut(s) 30, 55, 449, 453, 1257, 1402
BstDEI CTNAG 6 cut(s) 694, 941, 1110, 1476, 1489, 1725
BstDSI CCRYGG 1 cut(s) 767
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 6 cut(s) 937, 1075, 1225, 1240, 1506, 1653
BstMAI GTCTC 7 cut(s) 109, 399, 436, 503, 1381, 1423, 1656
BstMWI GCNNNNNNNGC 4 cut(s) 1138, 1265, 1310, 1466
BstNI CCWGG 2 cut(s) 324, 1517
BstNSI RCATGY 2 cut(s) 812, 1259
BstSCI CCNGG 3 cut(s) 154, 322, 1515
BstSFI CTRYAG 3 cut(s) 308, 1293, 1302
BstSLI GKGCMC 1 cut(s) 494
BstV1I GCAGC 5 cut(s) 138, 294, 598, 1288, 1653
BstV2I GAAGAC 1 cut(s) 862
BstX2I RGATCY 2 cut(s) 575, 959
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 2 cut(s) 575, 959
Bsu15I ATCGAT 2 cut(s) 1005, 1151
BsuI GTATCC 1 cut(s) 1370
BsuRI GGCC 2 cut(s) 159, 322
BsuTUI ATCGAT 2 cut(s) 1005, 1151
BtgI CCRYGG 1 cut(s) 767
BtrI CACGTC 1 cut(s) 1557
BtsCI GGATG 6 cut(s) 937, 1075, 1225, 1240, 1506, 1653
BtsI GCAGTG 1 cut(s) 1311
BtsIMutI CAGTG 2 cut(s) 1311, 1414
Cac8I GCNNGC 6 cut(s) 30, 55, 449, 453, 1257, 1402
CciI TCATGA 1 cut(s) 1048
Cfr13I GGNCC 3 cut(s) 72, 157, 320
ClaI ATCGAT 2 cut(s) 1005, 1151
Csp6I GTAC 2 cut(s) 116, 945
CviAII CATG 7 cut(s) 100, 207, 622, 768, 809, 1049, 1256
CviQI GTAC 2 cut(s) 116, 945
DdeI CTNAG 6 cut(s) 694, 941, 1110, 1476, 1489, 1725
Eam1104I CTCTTC 2 cut(s) 175, 773
EarI CTCTTC 2 cut(s) 175, 773
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 767
Eco24I GRGCYC 1 cut(s) 362
Eco31I GGTCTC 2 cut(s) 109, 436
Eco47I GGWCC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 2 cut(s) 156, 1593
Eco88I CYCGRG 1 cut(s) 1090
EcoICRI GAGCTC 1 cut(s) 360
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 322, 1515
EcoT14I CCWWGG 1 cut(s) 767
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 767
Esp3I CGTCTC 1 cut(s) 1381
FaeI CATG 7 cut(s) 103, 210, 625, 771, 812, 1052, 1259
FatI CATG 7 cut(s) 99, 206, 621, 767, 808, 1048, 1255
FbaI TGATCA 3 cut(s) 240, 541, 919
Fnu4HI GCNGC 6 cut(s) 152, 160, 308, 612, 1302, 1667
FokI GGATG 6 cut(s) 944, 1082, 1232, 1247, 1493, 1660
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 6 cut(s) 152, 160, 308, 612, 1302, 1667
FspBI CTAG 4 cut(s) 29, 452, 503, 1401
GluI GCNGC 6 cut(s) 152, 160, 308, 612, 1302, 1667
GsuI CTGGAG 3 cut(s) 423, 600, 1390
HaeIII GGCC 2 cut(s) 159, 322
HapII CCGG 3 cut(s) 60, 155, 1441
Hin1II CATG 7 cut(s) 103, 210, 625, 771, 812, 1052, 1259
HincII GTYRAC 1 cut(s) 1336
HindII GTYRAC 1 cut(s) 1336
HindIII AAGCTT 1 cut(s) 1139
HinfI GANTC 5 cut(s) 301, 772, 926, 975, 1052
HpaII CCGG 3 cut(s) 60, 155, 1441
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 2 cut(s) 1336, 1540
Hpy8I GTNNAC 2 cut(s) 1336, 1540
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 2 cut(s) 1374, 1645
HpyCH4III ACNGT 3 cut(s) 220, 834, 1161
HpyCH4IV ACGT 1 cut(s) 1556
HpyCH4V TGCA 8 cut(s) 210, 310, 389, 536, 614, 791, 1304, 1599
HpyF10VI GCNNNNNNNGC 4 cut(s) 1138, 1265, 1310, 1466
HpyF3I CTNAG 6 cut(s) 694, 941, 1110, 1476, 1489, 1725
HpySE526I ACGT 1 cut(s) 1556
Hsp92II CATG 7 cut(s) 103, 210, 625, 771, 812, 1052, 1259
Ksp22I TGATCA 3 cut(s) 240, 541, 919
LmnI GCTCC 4 cut(s) 62, 1129, 1409, 1560
Lsp1109I GCAGC 5 cut(s) 138, 294, 598, 1288, 1653
LweI GCATC 3 cut(s) 361, 398, 1318
MaeI CTAG 4 cut(s) 29, 452, 503, 1401
MaeII ACGT 1 cut(s) 1556
MaeIII GTNAC 4 cut(s) 39, 182, 515, 1492
MboII GAAGA 5 cut(s) 162, 334, 790, 867, 1363
MflI RGATCY 2 cut(s) 575, 959
MhlI GDGCHC 3 cut(s) 362, 494, 590
MlyI GAGTC 1 cut(s) 1046
MnlI CCTC 6 cut(s) 360, 758, 1159, 1216, 1225, 1471
MseI TTAA 3 cut(s) 569, 956, 1239
MslI CAYNNNNRTG 2 cut(s) 807, 1604
MspCI CTTAAG 1 cut(s) 955
MspI CCGG 3 cut(s) 60, 155, 1441
MspR9I CCNGG 3 cut(s) 156, 324, 1517
Mva1269I GAATGC 1 cut(s) 1599
MvaI CCWGG 2 cut(s) 324, 1517
MwoI GCNNNNNNNGC 4 cut(s) 1138, 1265, 1310, 1466
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 767
NheI GCTAGC 3 cut(s) 28, 451, 1400
NlaIII CATG 7 cut(s) 103, 210, 625, 771, 812, 1052, 1259
NlaIV GGNNCC 2 cut(s) 493, 1612
NmuCI GTSAC 2 cut(s) 182, 515
NspI RCATGY 2 cut(s) 812, 1259
PaeI GCATGC 1 cut(s) 1259
PaeR7I CTCGAG 1 cut(s) 1090
PagI TCATGA 1 cut(s) 1048
PcsI WCGNNNNNNNCGW 1 cut(s) 1380
PctI GAATGC 1 cut(s) 1599
PfeI GAWTC 4 cut(s) 301, 772, 926, 975
PkrI GCNGC 6 cut(s) 153, 161, 309, 613, 1303, 1668
PleI GAGTC 1 cut(s) 1046
PpsI GAGTC 1 cut(s) 1046
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 2 cut(s) 322, 1515
PspGI CCWGG 2 cut(s) 322, 1515
PspN4I GGNNCC 2 cut(s) 493, 1612
PspPI GGNCC 3 cut(s) 72, 157, 320
PstI CTGCAG 2 cut(s) 312, 1306
PsuI RGATCY 2 cut(s) 575, 959
RsaI GTAC 2 cut(s) 117, 946
RsaNI GTAC 2 cut(s) 116, 945
RseI CAYNNNNRTG 2 cut(s) 807, 1604
SacI GAGCTC 1 cut(s) 362
SaqAI TTAA 3 cut(s) 569, 956, 1239
SatI GCNGC 6 cut(s) 152, 160, 308, 612, 1302, 1667
Sau96I GGNCC 3 cut(s) 72, 157, 320
ScaI AGTACT 1 cut(s) 117
SchI GAGTC 1 cut(s) 1046
ScrFI CCNGG 3 cut(s) 156, 324, 1517
SduI GDGCHC 3 cut(s) 362, 494, 590
SfaNI GCATC 3 cut(s) 361, 398, 1318
SfcI CTRYAG 3 cut(s) 308, 1293, 1302
Sfr274I CTCGAG 1 cut(s) 1090
SinI GGWCC 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 1090
SmiMI CAYNNNNRTG 2 cut(s) 807, 1604
SmlI CTYRAG 2 cut(s) 955, 1090
SmoI CTYRAG 2 cut(s) 955, 1090
SphI GCATGC 1 cut(s) 1259
SsiI CCGC 3 cut(s) 160, 948, 1627
SspMI CTAG 4 cut(s) 29, 452, 503, 1401
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 3 cut(s) 154, 322, 1515
StyI CCWWGG 1 cut(s) 767
TaaI ACNGT 3 cut(s) 220, 834, 1161
TaiI ACGT 1 cut(s) 1559
TaqI TCGA 4 cut(s) 120, 1005, 1091, 1151
TaqII GACCGA 1 cut(s) 60
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 4 cut(s) 301, 772, 926, 975
Tru1I TTAA 3 cut(s) 569, 956, 1239
Tru9I TTAA 3 cut(s) 569, 956, 1239
TscAI CASTG 2 cut(s) 1311, 1414
TseFI GTSAC 2 cut(s) 182, 515
TseI GCWGC 5 cut(s) 151, 307, 611, 1301, 1666
Tsp45I GTSAC 2 cut(s) 182, 515
TspDTI ATGAA 4 cut(s) 567, 1023, 1086, 1169
TspRI CASTG 2 cut(s) 1311, 1414
Vha464I CTTAAG 1 cut(s) 955
VpaK11BI GGWCC 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 4 cut(s) 139, 526, 822, 1073
XceI RCATGY 2 cut(s) 812, 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
XhoI CTCGAG 1 cut(s) 1090
XspI CTAG 4 cut(s) 29, 452, 503, 1401
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.