FvH4_6g26990

Sodium/calcium exchanger protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
20646815 .. 20650578
3764 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26990.t3

Sequence Viewer

Length: 1743 bp
ATGTCAAAGAAACTGGCATTGTTCCTTTGTTTCTTATCCATCTTGCTAGTTAATCTAACCAGCTTTGGCCAAGGTCGTTCTATTCCTACAAATGACTCGCTGTTCAATTTAGTTTCTGATGGAGTAAACCAAAGTTCTTGGGATGAACTGAATTATATTTGGTTATCTGATAGCTGTGATGAGACATACGGGTTCTTGCCATGCACCAGCACAGTTCTTGGTAATATTTTCCTCATTATCGTCTATGGTTACGTGATGTTCCTTTCAGCCAAGTTATTGTCAGCTGGAAGTGAGATTCTGCTGCAGATTTTAGGACCTGGTATCATAGGGGGTCTCTTCTTGCCTCTATTGAGTGCTGTACCTGATGCCACCATTATCCTTGCATCAGGACTTTCTGGGGACACGGCGACAGCACAAAGTCAGGTCTCAGTCGGAATGGGGTTGCTAGCTGGATCCAATGTAATGCTTCTCACAATCCTATGGGGCACCTGTCTTATAGTTGGCAAATGTGACCTTGAAAATTCAGTTGCAGTTGATGAAAAAGATACAAAGAGTTTTAGCTTAACCGGATCTGGGGTGAGCACCGATATATGGACAAGCTATGCTGCAGGGATCATGGTTATCTCCATTATTCCATTTGTAATTGTGCAACTACCTCAAGTTTTCCCTACAACTTCTGATAGTAGCTTGCCAGTTCTAATTTCACTCATTGTTGCCATCTGTTTTGTGATCGCTTATAGCATCTATCAGGTTTTTCAGCCTTGGATTCAGAAGAGAAAACTTGCATATGCAAAGCATAAGCATATGATGTCAGAGATTCTAAAGCAGTTAAGAACAAACGCGCTTGGCAGATTTCTTACAGATGATGGTGCTCCTGACAAAGTTGTTATAGAAAAGTTATTCAGGACACTAGATCTGAACTCGGATGGTTATCTGAACACAACAGACTTAAGATCTTTGATAATAGGAATCGAATTTGATGATGGCGAAGATATAAATATCAATGAAGCCACTTCTCTAGTGATGAAAGACTTTGATACAACTCATGATTCAAAGATTGATGTTGATGAATTCTTCAAAGGAATATCAAGGTGGATTAACAAGGCAAAGCATGCTGCAATGATGGACCGCGGAAAGGTTCCACTATCAATGAAACTGTTGGATGATTATGATAAGCAAACAAAGGAAGAACAAGATCGTTATGGGGATCACATTGATGAGATAGTGGAGGATGTTAAAAATGCACCCTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGGACCATTCTTGCTGCTGTGGTTGCCGATCCCCTTGTTGATGCTGTTGACAACTTCTCAACAGCTACGAGTATTCCTACATTCTTCGTCTCCTTTGTTATTCTGCCTTTTGTTAGCTCCAGTGAGATTGTGTCCACTCTCATTTTTGTCAGCCGGAAGAAGCAGAGATCGGCATCACTTGCCTACTCCGAGATATATGGATCAGTAACAATGAGTAACATCCTTTCCCTGGCAGTGTTCTTAGGTCTTGTGTACATCCGAAATCTGACATGGAGCTTCTCGGCGGAAGTTCTGGTCATTATAATCGTCTGCATTCTGATGGGGGTTGTTGCGTGTTGCCGCACCACCTTCCCTGTTTGGTTGTGTTTTGGGGCTGTAATGTTATATCCCCTATCTCTGTTGCTAGTTTACATTCTTGAATATGTTTTTGGGTGGTCATCGACGTCAGTTTTAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

581

Amino Acids

63.58

Weight (kDa)

4.81

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 76 - 253 5.2e-08 Sodium/calcium exchanger protein
EF-hand_7 PF13499 296 - 362 1.5e-10 EF-hand domain pair
Na_Ca_ex PF01699 422 - 492 8.9e-06 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1586
AatII GACGTC 1 cut(s) 1730
AccB1I GGYRCC 1 cut(s) 485
AccII CGCG 2 cut(s) 842, 1131
AciI CCGC 4 cut(s) 1129, 1131, 1568, 1624
AclWI GGATC 7 cut(s) 447, 460, 577, 620, 1215, 1307, 1492
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 3 cut(s) 520, 974, 1070
AcyI GRCGYC 1 cut(s) 1727
AfaI GTAC 3 cut(s) 360, 1269, 1538
AfiI CCNNNNNNNGG 4 cut(s) 573, 591, 1135, 1513
AflII CTTAAG 1 cut(s) 949
AgsI TTSAA 5 cut(s) 106, 518, 1053, 1078, 1703
AjnI CCWGG 3 cut(s) 316, 1247, 1512
AjuI GAANNNNNNNTTGG 2 cut(s) 1695, 1727
Alw21I GWGCWC 2 cut(s) 584, 874
Alw26I GTCTC 4 cut(s) 176, 338, 430, 1378
AlwI GGATC 7 cut(s) 447, 460, 577, 620, 1215, 1307, 1492
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 4 cut(s) 301, 605, 1115, 1298
ApoI RAATTY 3 cut(s) 520, 974, 1070
AspLEI GCGC 1 cut(s) 844
AspS9I GGNCC 3 cut(s) 314, 1126, 1287
AsuHPI GGTGA 1 cut(s) 589
AsuNHI GCTAGC 1 cut(s) 445
AvaII GGWCC 3 cut(s) 314, 1126, 1287
BaeGI GKGCMC 1 cut(s) 488
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 485
Bbv12I GWGCWC 2 cut(s) 584, 874
BbvI GCAGC 4 cut(s) 288, 592, 1102, 1285
BccI CCATC 8 cut(s) 47, 113, 725, 860, 920, 977, 1117, 1597
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 3 cut(s) 318, 1249, 1514
BcoDI GTCTC 4 cut(s) 176, 338, 430, 1378
BfaI CTAG 5 cut(s) 47, 446, 911, 1019, 1688
BfmI CTRYAG 2 cut(s) 302, 606
BfrI CTTAAG 1 cut(s) 949
BglII AGATCT 2 cut(s) 913, 953
BisI GCNGC 5 cut(s) 302, 606, 1116, 1299, 1624
BlsI GCNGC 5 cut(s) 303, 607, 1117, 1300, 1625
BmcAI AGTACT 1 cut(s) 1269
Bme1390I CCNGG 3 cut(s) 318, 1249, 1514
Bme18I GGWCC 3 cut(s) 314, 1126, 1287
BmgT120I GGNCC 3 cut(s) 314, 1126, 1287
BmiI GGNNCC 4 cut(s) 454, 487, 1140, 1288
BmrFI CCNGG 3 cut(s) 318, 1249, 1514
BmsI GCATC 5 cut(s) 355, 392, 750, 1315, 1466
BmtI GCTAGC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 1387
BpuEI CTTGAG 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 253
BsaBI GATNNNNATC 2 cut(s) 930, 1456
BsaHI GRCGYC 1 cut(s) 1727
BsaI GGTCTC 2 cut(s) 338, 430
BsaJI CCNNGG 5 cut(s) 70, 761, 1129, 1247, 1512
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 4 cut(s) 573, 591, 1135, 1513
Bse1I ACTGG 3 cut(s) 18, 692, 1404
Bse3DI GCAATG 1 cut(s) 1125
Bse8I GATNNNNATC 2 cut(s) 930, 1456
BseBI CCWGG 3 cut(s) 318, 1249, 1514
BseDI CCNNGG 5 cut(s) 70, 761, 1129, 1247, 1512
BseGI GGATG 6 cut(s) 148, 931, 1168, 1237, 1503, 1539
BseJI GATNNNNATC 2 cut(s) 930, 1456
BseLI CCNNNNNNNGG 4 cut(s) 573, 591, 1135, 1513
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 3 cut(s) 18, 692, 1404
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 4 cut(s) 288, 592, 1102, 1285
Bsh1236I CGCG 2 cut(s) 842, 1131
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 2 cut(s) 584, 874
BsiSI CCGG 2 cut(s) 567, 1438
BslFI GGGAC 2 cut(s) 413, 1300
BslI CCNNNNNNNGG 4 cut(s) 573, 591, 1135, 1513
BsmAI GTCTC 4 cut(s) 176, 338, 430, 1378
BsmBI CGTCTC 1 cut(s) 1378
BsmFI GGGAC 2 cut(s) 413, 1300
BsmI GAATGC 1 cut(s) 1596
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 2 cut(s) 338, 430
Bsp1286I GDGCHC 3 cut(s) 488, 584, 874
Bsp1407I TGTACA 1 cut(s) 1536
BspACI CCGC 4 cut(s) 1129, 1131, 1568, 1624
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 440
BspFNI CGCG 2 cut(s) 842, 1131
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 4 cut(s) 454, 487, 1140, 1288
BspMAI CTGCAG 2 cut(s) 306, 610
BspOI GCTAGC 1 cut(s) 449
BspPI GGATC 7 cut(s) 447, 460, 577, 620, 1215, 1307, 1492
BspT107I GGYRCC 1 cut(s) 485
BspTI CTTAAG 1 cut(s) 949
BspTNI GGTCTC 2 cut(s) 338, 430
BsrDI GCAATG 1 cut(s) 1125
BsrGI TGTACA 1 cut(s) 1536
BsrI ACTGG 3 cut(s) 18, 692, 1404
BssECI CCNNGG 5 cut(s) 70, 761, 1129, 1247, 1512
BssNI GRCGYC 1 cut(s) 1727
BssT1I CCWWGG 2 cut(s) 70, 761
Bst2UI CCWGG 3 cut(s) 318, 1249, 1514
Bst4CI ACNGT 2 cut(s) 214, 1158
Bst6I CTCTTC 2 cut(s) 341, 767
BstACI GRCGYC 1 cut(s) 1727
BstAFI CTTAAG 1 cut(s) 949
BstAPI GCANNNNNTGC 2 cut(s) 1112, 1463
BstAUI TGTACA 1 cut(s) 1536
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 4 cut(s) 447, 689, 1113, 1254
BstDEI CTNAG 2 cut(s) 427, 1525
BstDSI CCRYGG 1 cut(s) 1129
BstF5I GGATG 6 cut(s) 148, 931, 1168, 1237, 1503, 1539
BstFNI CGCG 2 cut(s) 842, 1131
BstHHI GCGC 1 cut(s) 844
BstMAI GTCTC 4 cut(s) 176, 338, 430, 1378
BstMWI GCNNNNNNNGC 4 cut(s) 1112, 1262, 1307, 1463
BstNI CCWGG 3 cut(s) 318, 1249, 1514
BstNSI RCATGY 2 cut(s) 1115, 1256
BstSCI CCNGG 3 cut(s) 316, 1247, 1512
BstSFI CTRYAG 2 cut(s) 302, 606
BstSLI GKGCMC 1 cut(s) 488
BstUI CGCG 2 cut(s) 842, 1131
BstV1I GCAGC 4 cut(s) 288, 592, 1102, 1285
BstX2I RGATCY 4 cut(s) 452, 569, 913, 953
BstYI RGATCY 4 cut(s) 452, 569, 913, 953
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 1129
BtsCI GGATG 6 cut(s) 148, 931, 1168, 1237, 1503, 1539
BtsI GCAGTG 1 cut(s) 1524
BtsIMutI CAGTG 2 cut(s) 1411, 1524
Cac8I GCNNGC 4 cut(s) 447, 689, 1113, 1254
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 1 cut(s) 844
Cfr13I GGNCC 3 cut(s) 314, 1126, 1287
Cfr42I CCGCGG 1 cut(s) 1132
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 3 cut(s) 359, 1268, 1537
CviAII CATG 6 cut(s) 201, 616, 1046, 1112, 1253, 1554
CviQI GTAC 3 cut(s) 359, 1268, 1537
DdeI CTNAG 2 cut(s) 427, 1525
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 341, 767
EarI CTCTTC 2 cut(s) 341, 767
EciI GGCGGA 1 cut(s) 1583
Eco130I CCWWGG 2 cut(s) 70, 761
Eco31I GGTCTC 2 cut(s) 338, 430
Eco47I GGWCC 3 cut(s) 314, 1126, 1287
EcoO109I RGGNCCY 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 1070
EcoRII CCWGG 3 cut(s) 316, 1247, 1512
EcoT14I CCWWGG 2 cut(s) 70, 761
ErhI CCWWGG 2 cut(s) 70, 761
Esp3I CGTCTC 1 cut(s) 1378
FaeI CATG 6 cut(s) 204, 619, 1049, 1115, 1256, 1557
FaqI GGGAC 2 cut(s) 413, 1300
FatI CATG 6 cut(s) 200, 615, 1045, 1111, 1252, 1553
FauNDI CATATG 2 cut(s) 787, 804
Fnu4HI GCNGC 5 cut(s) 302, 606, 1116, 1299, 1624
FokI GGATG 6 cut(s) 155, 938, 1175, 1244, 1490, 1526
Fsp4HI GCNGC 5 cut(s) 302, 606, 1116, 1299, 1624
FspBI CTAG 5 cut(s) 47, 446, 911, 1019, 1688
GlaI GCGC 1 cut(s) 843
GluI GCNGC 5 cut(s) 302, 606, 1116, 1299, 1624
GsuI CTGGAG 1 cut(s) 1387
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 567, 1438
HhaI GCGC 1 cut(s) 844
Hin1I GRCGYC 1 cut(s) 1727
Hin1II CATG 6 cut(s) 204, 619, 1049, 1115, 1256, 1557
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HincII GTYRAC 1 cut(s) 1333
HindII GTYRAC 1 cut(s) 1333
HinfI GANTC 6 cut(s) 95, 295, 766, 817, 969, 1049
HpaII CCGG 2 cut(s) 567, 1438
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 5 cut(s) 127, 1333, 1419, 1537, 1693
Hpy188III TCNNGA 5 cut(s) 387, 875, 904, 1046, 1700
Hpy8I GTNNAC 5 cut(s) 127, 1333, 1419, 1537, 1693
Hpy99I CGWCG 1 cut(s) 1729
HpyAV CCTTC 1 cut(s) 1642
HpyCH4III ACNGT 2 cut(s) 214, 1158
HpyCH4IV ACGT 2 cut(s) 252, 1727
HpyF10VI GCNNNNNNNGC 4 cut(s) 1112, 1262, 1307, 1463
HpyF3I CTNAG 2 cut(s) 427, 1525
HpySE526I ACGT 2 cut(s) 252, 1727
Hsp92I GRCGYC 1 cut(s) 1727
Hsp92II CATG 6 cut(s) 204, 619, 1049, 1115, 1256, 1557
HspAI GCGC 1 cut(s) 842
KspI CCGCGG 1 cut(s) 1132
LmnI GCTCC 3 cut(s) 877, 1406, 1557
Lsp1109I GCAGC 4 cut(s) 288, 592, 1102, 1285
LweI GCATC 5 cut(s) 355, 392, 750, 1315, 1466
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 5 cut(s) 47, 446, 911, 1019, 1688
MaeII ACGT 2 cut(s) 252, 1727
MaeIII GTNAC 4 cut(s) 248, 509, 1489, 1499
MboII GAAGA 7 cut(s) 328, 784, 1001, 1066, 1199, 1360, 1453
MflI RGATCY 4 cut(s) 452, 569, 913, 953
MhlI GDGCHC 3 cut(s) 488, 584, 874
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 7 cut(s) 106, 151, 520, 642, 699, 974, 1070
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 412, 1140
MnlI CCTC 5 cut(s) 242, 354, 666, 1222, 1267
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 6 cut(s) 51, 563, 830, 950, 1098, 1236
MslI CAYNNNNRTG 2 cut(s) 1215, 1601
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 2 cut(s) 284, 1131
MspCI CTTAAG 1 cut(s) 949
MspI CCGG 2 cut(s) 567, 1438
MspR9I CCNGG 3 cut(s) 318, 1249, 1514
Mva1269I GAATGC 1 cut(s) 1596
MvaI CCWGG 3 cut(s) 318, 1249, 1514
MvnI CGCG 2 cut(s) 842, 1131
MwoI GCNNNNNNNGC 4 cut(s) 1112, 1262, 1307, 1463
NdeI CATATG 2 cut(s) 787, 804
NheI GCTAGC 1 cut(s) 445
NlaIII CATG 6 cut(s) 204, 619, 1049, 1115, 1256, 1557
NlaIV GGNNCC 4 cut(s) 454, 487, 1140, 1288
NmeAIII GCCGAG 1 cut(s) 1544
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 2 cut(s) 1115, 1256
PaeI GCATGC 2 cut(s) 1115, 1256
PagI TCATGA 1 cut(s) 1045
PctI GAATGC 1 cut(s) 1596
PfeI GAWTC 5 cut(s) 295, 766, 817, 969, 1049
PkrI GCNGC 5 cut(s) 303, 607, 1117, 1300, 1625
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 253
PpuMI RGGWCCY 1 cut(s) 314
PsiI TTATAA 1 cut(s) 1586
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 3 cut(s) 316, 1247, 1512
PspGI CCWGG 3 cut(s) 316, 1247, 1512
PspN4I GGNNCC 4 cut(s) 454, 487, 1140, 1288
PspPI GGNCC 3 cut(s) 314, 1126, 1287
PspPPI RGGWCCY 1 cut(s) 314
PstI CTGCAG 2 cut(s) 306, 610
PsuI RGATCY 4 cut(s) 452, 569, 913, 953
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 3 cut(s) 360, 1269, 1538
RsaNI GTAC 3 cut(s) 359, 1268, 1537
RseI CAYNNNNRTG 2 cut(s) 1215, 1601
SacII CCGCGG 1 cut(s) 1132
SaqAI TTAA 6 cut(s) 51, 563, 830, 950, 1098, 1236
SatI GCNGC 5 cut(s) 302, 606, 1116, 1299, 1624
Sau96I GGNCC 3 cut(s) 314, 1126, 1287
ScaI AGTACT 1 cut(s) 1269
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 318, 1249, 1514
SduI GDGCHC 3 cut(s) 488, 584, 874
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 5 cut(s) 355, 392, 750, 1315, 1466
SfcI CTRYAG 2 cut(s) 302, 606
Sfr303I CCGCGG 1 cut(s) 1132
SgrBI CCGCGG 1 cut(s) 1132
SinI GGWCC 3 cut(s) 314, 1126, 1287
SmiMI CAYNNNNRTG 2 cut(s) 1215, 1601
SmlI CTYRAG 2 cut(s) 657, 949
SmoI CTYRAG 2 cut(s) 657, 949
SphI GCATGC 2 cut(s) 1115, 1256
Sse9I AATT 7 cut(s) 106, 151, 520, 642, 699, 974, 1070
SsiI CCGC 4 cut(s) 1129, 1131, 1568, 1624
SspI AATATT 1 cut(s) 226
SspMI CTAG 5 cut(s) 47, 446, 911, 1019, 1688
StyD4I CCNGG 3 cut(s) 316, 1247, 1512
StyI CCWWGG 2 cut(s) 70, 761
TaaI ACNGT 2 cut(s) 214, 1158
TaiI ACGT 2 cut(s) 255, 1730
TaqI TCGA 2 cut(s) 972, 1724
TasI AATT 7 cut(s) 106, 151, 520, 642, 699, 974, 1070
TatI WGTACW 2 cut(s) 1267, 1536
TauI GCSGC 1 cut(s) 1626
TfiI GAWTC 5 cut(s) 295, 766, 817, 969, 1049
Tru1I TTAA 6 cut(s) 51, 563, 830, 950, 1098, 1236
Tru9I TTAA 6 cut(s) 51, 563, 830, 950, 1098, 1236
TscAI CASTG 2 cut(s) 1411, 1524
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 4 cut(s) 301, 605, 1115, 1298
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 6 cut(s) 159, 552, 1020, 1040, 1083, 1166
TspRI CASTG 2 cut(s) 1411, 1524
Vha464I CTTAAG 1 cut(s) 949
VpaK11BI GGWCC 3 cut(s) 314, 1126, 1287
XapI RAATTY 3 cut(s) 520, 974, 1070
XceI RCATGY 2 cut(s) 1115, 1256
XspI CTAG 5 cut(s) 47, 446, 911, 1019, 1688
ZraI GACGTC 1 cut(s) 1728
ZrmI AGTACT 1 cut(s) 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.