FvH4_3g10820

Sodium/calcium exchanger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014689
Physical Location & Seq
Forward (+)
6437996 .. 6438565
570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10820.t1

Sequence Viewer

Length: 489 bp
ATGCACGCTGGCATGCCTCAAAAGCAGTACTCATGTTGCTTCTGGGGACCATTGTTGCTGCTGCATGTGGTTGCCGATCCCCTTGTTGATGCTGTTGACAACTTCTCAACAGCTACGAGTATTCCTACATTCTTCGTCTCCTTTGTTATTCTGCCTTTTGTTAGCTCCAGTGAGATTGTGTCCACTCTCATTTTTGTCAGCCGGAAGAAGCAGAGATCGGCATCACTTGCCTACTCCGAGATATATGGATCAGTAACAATGAGTGACATCCTTTCCCTGGCAGTGTTCTTAGGTCTTGTGTACATCCGAAATCTGACATGGAGCTTCTCGGCGGAAGTTCTGGTCATTATAATCGTCTGCATTCTGATGGGGGTTGTTGCGAGTTGCCGCACCACCTTCCCTGTTTGGATGTGTTTTGGGGCTGTAATGTTATATCCCCTATCTCTGTTGCTAGTTTACATTCTTGAATATGTTTTTGGGTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 Na_Ca_ex

Protein Analysis

163

Amino Acids

18.0

Weight (kDa)

6.02

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 18 - 153 5.3e-11 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AciI CCGC 2 cut(s) 332, 388
AclWI GGATC 2 cut(s) 71, 256
AfaI GTAC 2 cut(s) 29, 302
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 1 cut(s) 467
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 1 cut(s) 459
AluBI AGCT 3 cut(s) 113, 165, 324
AluI AGCT 3 cut(s) 113, 165, 324
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 2 cut(s) 71, 256
ApeKI GCWGC 2 cut(s) 58, 61
AspS9I GGNCC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 45, 48
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 452
BisI GCNGC 3 cut(s) 59, 62, 388
BlsI GCNGC 3 cut(s) 60, 63, 389
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 2 cut(s) 79, 230
BpmI CTGGAG 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 220
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 3 cut(s) 267, 303, 414
BseJI GATNNNNATC 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 277
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 45, 48
BsiSI CCGG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 60
BsmI GAATGC 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 3 cut(s) 76, 215, 248
BspACI CCGC 2 cut(s) 332, 388
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 2 cut(s) 71, 256
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 3 cut(s) 76, 215, 248
Bst2UI CCWGG 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 6, 10, 14
BstDEI CTNAG 1 cut(s) 289
BstF5I GGATG 3 cut(s) 267, 303, 414
BstKTI GATC 3 cut(s) 79, 218, 251
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 3 cut(s) 76, 215, 248
BstMWI GCNNNNNNNGC 2 cut(s) 22, 227
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 2 cut(s) 16, 68
BstSCI CCNGG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 45, 48
BtsCI GGATG 3 cut(s) 267, 303, 414
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 175, 288
Cac8I GCNNGC 3 cut(s) 6, 10, 14
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 28, 301
CviAII CATG 4 cut(s) 13, 33, 65, 318
CviJI RGCY 5 cut(s) 113, 165, 201, 324, 422
CviKI_1 RGCY 5 cut(s) 113, 165, 201, 324, 422
CviQI GTAC 2 cut(s) 28, 301
DdeI CTNAG 1 cut(s) 289
DpnI GATC 3 cut(s) 78, 217, 250
DpnII GATC 3 cut(s) 76, 215, 248
EciI GGCGGA 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 4 cut(s) 16, 36, 68, 321
FaqI GGGAC 1 cut(s) 60
FatI CATG 4 cut(s) 12, 32, 64, 317
Fnu4HI GCNGC 3 cut(s) 59, 62, 388
FokI GGATG 3 cut(s) 254, 290, 421
Fsp4HI GCNGC 3 cut(s) 59, 62, 388
FspBI CTAG 1 cut(s) 452
GluI GCNGC 3 cut(s) 59, 62, 388
GsuI CTGGAG 1 cut(s) 151
HapII CCGG 1 cut(s) 202
Hin1II CATG 4 cut(s) 16, 36, 68, 321
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 1 cut(s) 202
Hpy166II GTNNAC 4 cut(s) 97, 183, 301, 457
Hpy188I TCNGA 4 cut(s) 238, 308, 315, 366
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 4 cut(s) 97, 183, 301, 457
HpyAV CCTTC 1 cut(s) 406
HpyCH4V TGCA 3 cut(s) 4, 64, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 227
HpyF3I CTNAG 1 cut(s) 289
Hsp92II CATG 4 cut(s) 16, 36, 68, 321
Kzo9I GATC 3 cut(s) 76, 215, 248
LmnI GCTCC 2 cut(s) 170, 321
LpnPI CCDG 7 cut(s) 28, 181, 215, 263, 290, 326, 414
Lsp1109I GCAGC 2 cut(s) 45, 48
LweI GCATC 2 cut(s) 79, 230
MaeI CTAG 1 cut(s) 452
MaeIII GTNAC 2 cut(s) 253, 263
MalI GATC 3 cut(s) 78, 217, 250
MboI GATC 3 cut(s) 76, 215, 248
MboII GAAGA 2 cut(s) 124, 217
MnlI CCTC 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 22, 227
NdeII GATC 3 cut(s) 76, 215, 248
NlaIII CATG 4 cut(s) 16, 36, 68, 321
NlaIV GGNNCC 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 263
NspI RCATGY 2 cut(s) 16, 68
PaeI GCATGC 1 cut(s) 16
PctI GAATGC 1 cut(s) 360
PkrI GCNGC 3 cut(s) 60, 63, 389
PsiI TTATAA 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 47
RsaI GTAC 2 cut(s) 29, 302
RsaNI GTAC 2 cut(s) 28, 301
RseI CAYNNNNRTG 1 cut(s) 365
SatI GCNGC 3 cut(s) 59, 62, 388
Sau3AI GATC 3 cut(s) 76, 215, 248
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 278
SetI ASST 5 cut(s) 115, 167, 295, 326, 398
SfaNI GCATC 2 cut(s) 79, 230
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 365
SphI GCATGC 1 cut(s) 16
SsiI CCGC 2 cut(s) 332, 388
SspMI CTAG 1 cut(s) 452
StyD4I CCNGG 1 cut(s) 276
TatI WGTACW 2 cut(s) 27, 300
TauI GCSGC 1 cut(s) 390
TscAI CASTG 2 cut(s) 175, 288
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 58, 61
Tsp45I GTSAC 1 cut(s) 263
TspRI CASTG 2 cut(s) 175, 288
VpaK11BI GGWCC 1 cut(s) 47
XceI RCATGY 2 cut(s) 16, 68
XspI CTAG 1 cut(s) 452
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.