Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014689

Physical Location & Seq

Genomic Coordinates Forward (+)

42752711 .. 42754331

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGCTTGCTAGCTGGATCCAATGTAATGCTTATCACAATCCTATGGGGGACCTGTCTTCTAGTTGCCAAATGTGACCTTGAAAATTCAGTTGCAGTTGTTGAAAAAGATACTAAGCGTTTTGGCTTAACCGGAATCCAATTTGATGATGACGTAGATATAAATATTGATGAAGCCATTTCTATGAGAGACTTTGATACAACTAGTGATTCGAAGATTGATGTTGATGAATTCTTCAAAGGGATTTCAAGGTGTAACAAGGCTAAGCGTGCTGCAATGATGGACTGTGGAAAGGTTCCGCTATCAATGAAACTGTTTGATGATTTTGATAAGGAGGATATTATAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTGCTGTGATTGCTGATCCCCCTGTTGATGCTGTTGACAACTTCCTTTTTTTGAAAGGGTTAACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

157

Amino Acids

17.18

Weight (kDa)

4.47

Isoelectric Point (pI)

16.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10820 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990
malus_domestica	MD11G1258500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0129111 RchiOBHm_Chr2g0129121
rosa_laevigata	RLG00000019056
rosa_multiflora	Rmu_sc0009045.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114840
rosa_rugosa	Rorug02G0284900
rosa_samantha	Rh2AG337000 Rh2BG345000 Rh2CG324400 Rh2DG361800
rosa_wichuraiana	Rw2G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	3 cut(s)	12, 25, 413
AcsI	RAATTY	2 cut(s)	85, 230
AfaI	GTAC	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	83, 104, 238, 249, 457
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	12, 25, 413
ApeKI	GCWGC	2 cut(s)	272, 404
ApoI	RAATTY	2 cut(s)	85, 230
AspS9I	GGNCC	1 cut(s)	51
AsuII	TTCGAA	1 cut(s)	212
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	259, 391
BccI	CCATC	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	183
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	3 cut(s)	11, 62, 204
BisI	GCNGC	2 cut(s)	273, 405
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	2 cut(s)	274, 406
BmcAI	AGTACT	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	4 cut(s)	19, 52, 297, 394
BmsI	GCATC	1 cut(s)	421
BmtI	GCTAGC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	282
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	259, 391
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	17, 418
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	19, 52, 297, 394
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	3 cut(s)	12, 25, 413
BspT104I	TTCGAA	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	17, 418
Bst4CI	ACNGT	2 cut(s)	287, 315
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	8, 12, 270, 360
BstDEI	CTNAG	2 cut(s)	114, 264
BstKTI	GATC	2 cut(s)	20, 421
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	17, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 368, 413
BstNSI	RCATGY	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	259, 391
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Cac8I	GCNNGC	4 cut(s)	8, 12, 270, 360
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	5 cut(s)	6, 14, 126, 176, 263
CviKI_1	RGCY	5 cut(s)	6, 14, 126, 176, 263
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	114, 264
DpnI	GATC	2 cut(s)	19, 420
DpnII	GATC	2 cut(s)	17, 418
Eco47I	GGWCC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	230
FaeI	CATG	1 cut(s)	362
FaiI	YATR	5 cut(s)	46, 161, 185, 344, 360
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	273, 405
Fsp4HI	GCNGC	2 cut(s)	273, 405
FspBI	CTAG	3 cut(s)	11, 62, 204
GluI	GCNGC	2 cut(s)	273, 405
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	1 cut(s)	362
HincII	GTYRAC	2 cut(s)	439, 465
HindII	GTYRAC	2 cut(s)	439, 465
HinfI	GANTC	2 cut(s)	135, 209
HpaI	GTTAAC	1 cut(s)	465
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	2 cut(s)	439, 465
Hpy8I	GTNNAC	2 cut(s)	439, 465
HpyCH4III	ACNGT	2 cut(s)	287, 315
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	95, 275, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 368, 413
HpyF3I	CTNAG	2 cut(s)	114, 264
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	362
KspAI	GTTAAC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	17, 418
LpnPI	CCDG	5 cut(s)	67, 145, 340, 374, 438
Lsp1109I	GCAGC	2 cut(s)	259, 391
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	3 cut(s)	11, 62, 204
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	74, 254
MalI	GATC	2 cut(s)	19, 420
MboI	GATC	2 cut(s)	17, 418
MboII	GAAGA	3 cut(s)	50, 226, 226
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	3 cut(s)	85, 140, 230
MnlI	CCTC	2 cut(s)	328, 373
MseI	TTAA	3 cut(s)	128, 464, 472
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	269, 368, 413
NdeII	GATC	2 cut(s)	17, 418
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	4 cut(s)	19, 52, 297, 394
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	362
NspV	TTCGAA	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	135, 209
PkrI	GCNGC	2 cut(s)	274, 406
PpuMI	RGGWCCY	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	19, 52, 297, 394
PspPI	GGNCC	1 cut(s)	51
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	128, 464, 472
SatI	GCNGC	2 cut(s)	273, 405
Sau3AI	GATC	2 cut(s)	17, 418
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	375
SetI	ASST	6 cut(s)	16, 56, 81, 156, 254, 297
SfaNI	GCATC	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	203
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	3 cut(s)	85, 140, 230
SsiI	CCGC	1 cut(s)	299
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	3 cut(s)	11, 62, 204
TaaI	ACNGT	2 cut(s)	287, 315
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	85, 140, 230
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	135, 209
Tru1I	TTAA	3 cut(s)	128, 464, 472
Tru9I	TTAA	3 cut(s)	128, 464, 472
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	272, 404
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	186, 243, 323
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	2 cut(s)	85, 230
XceI	RCATGY	1 cut(s)	362
XspI	CTAG	3 cut(s)	11, 62, 204
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.