Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014689

Physical Location & Seq

Genomic Coordinates Reverse (-)

40952038 .. 40952595

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGAGACTTTGATACAACTCGTGATTCAAAGATTGATGTTGATGAATTCTTCAAAGGAATTTCAAGGTGTAACAAGGCTAAGCGTGCTGCAATGATGGACTGGGGAAAGGTTCCGATATCAATGAAACTGTTTGATGATTTTGATAAGGAAGAACAAGATCGGTATGGGGATCAGATTGATGAGATTGTGGAGGATGTTATAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGATCCATTGTTGCTGCTGTGATTGCTGATCCCCTTGTTGATGCTGTTGACAACTTCCTTTTTTTTGAAAGGGTTAACTTCTTAACAGCTACAGGAATTCCTACATTCTTTGTCTCATTTGGTATTCTGCCTTTTGTTAGCTCCAGTGAGATTGTGTCCACTCTAAATTTTGTCAGCCAGAAGAAGCAGAGAACAGCATCATTGGCCTACTCTGAGTTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

157

Amino Acids

17.74

Weight (kDa)

4.68

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10820 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990
malus_domestica	MD11G1258500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0129111 RchiOBHm_Chr2g0129121
rosa_laevigata	RLG00000019056
rosa_multiflora	Rmu_sc0009045.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114840
rosa_rugosa	Rorug02G0284900
rosa_samantha	Rh2AG337000 Rh2BG345000 Rh2CG324400 Rh2DG361800
rosa_wichuraiana	Rw2G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AclWI	GGATC	4 cut(s)	180, 246, 259, 272
AcsI	RAATTY	4 cut(s)	47, 60, 345, 415
AfaI	GTAC	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	30, 55, 66, 317
AluBI	AGCT	2 cut(s)	338, 390
AluI	AGCT	2 cut(s)	338, 390
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	4 cut(s)	180, 246, 259, 272
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	2 cut(s)	89, 263
ApoI	RAATTY	4 cut(s)	47, 60, 345, 415
BamHI	GGATCC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	76, 250
BccI	CCATC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	90, 264
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	2 cut(s)	91, 265
BmcAI	AGTACT	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	114, 253
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	280, 455
BmuI	ACTGGG	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	81
Bse1I	ACTGG	3 cut(s)	107, 218, 393
Bse3DI	GCAATG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	107, 218, 393
BseXI	GCAGC	2 cut(s)	76, 250
BshFI	GGCC	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	455
Bsp143I	GATC	4 cut(s)	160, 172, 251, 277
Bsp1720I	GCTNAGC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	114, 253
BspPI	GGATC	4 cut(s)	180, 246, 259, 272
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	107, 218, 393
BssMI	GATC	4 cut(s)	160, 172, 251, 277
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	87, 219
BstDEI	CTNAG	2 cut(s)	81, 462
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	4 cut(s)	163, 175, 254, 280
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	4 cut(s)	160, 172, 251, 277
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 227, 272, 452
BstNSI	RCATGY	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	76, 250
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	87, 219
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	5 cut(s)	80, 338, 390, 426, 455
CviKI_1	RGCY	5 cut(s)	80, 338, 390, 426, 455
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	81, 462
DpnI	GATC	4 cut(s)	162, 174, 253, 279
DpnII	GATC	4 cut(s)	160, 172, 251, 277
Eco32I	GATATC	1 cut(s)	120
EcoRI	GAATTC	2 cut(s)	47, 345
EcoRV	GATATC	1 cut(s)	120
FaeI	CATG	1 cut(s)	221
FaiI	YATR	3 cut(s)	168, 203, 219
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	90, 264
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	90, 264
GluI	GCNGC	2 cut(s)	90, 264
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	455
Hin1II	CATG	1 cut(s)	221
HincII	GTYRAC	2 cut(s)	298, 325
HindII	GTYRAC	2 cut(s)	298, 325
HinfI	GANTC	1 cut(s)	26
HpaI	GTTAAC	1 cut(s)	325
Hpy166II	GTNNAC	3 cut(s)	298, 325, 408
Hpy188I	TCNGA	3 cut(s)	117, 177, 463
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	3 cut(s)	298, 325, 408
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	92, 209
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 227, 272, 452
HpyF3I	CTNAG	2 cut(s)	81, 462
Hsp92II	CATG	1 cut(s)	221
KspAI	GTTAAC	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	160, 172, 251, 277
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	6 cut(s)	88, 199, 233, 327, 406, 440
Lsp1109I	GCAGC	2 cut(s)	76, 250
LweI	GCATC	2 cut(s)	280, 455
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	4 cut(s)	162, 174, 253, 279
MboI	GATC	4 cut(s)	160, 172, 251, 277
MboII	GAAGA	3 cut(s)	43, 164, 442
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	4 cut(s)	47, 60, 345, 415
MnlI	CCTC	2 cut(s)	187, 232
MseI	TTAA	3 cut(s)	324, 332, 472
MwoI	GCNNNNNNNGC	4 cut(s)	86, 227, 272, 452
NdeII	GATC	4 cut(s)	160, 172, 251, 277
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	2 cut(s)	114, 253
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	91, 265
PsiI	TTATAA	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	114, 253
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	324, 332, 472
SatI	GCNGC	2 cut(s)	90, 264
Sau3AI	GATC	4 cut(s)	160, 172, 251, 277
ScaI	AGTACT	1 cut(s)	234
SetI	ASST	4 cut(s)	71, 114, 340, 392
SfaNI	GCATC	2 cut(s)	280, 455
SfcI	CTRYAG	1 cut(s)	339
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	4 cut(s)	47, 60, 345, 415
TaaI	ACNGT	1 cut(s)	132
TasI	AATT	4 cut(s)	47, 60, 345, 415
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	324, 332, 472
Tru9I	TTAA	3 cut(s)	324, 332, 472
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	2 cut(s)	89, 263
TspDTI	ATGAA	2 cut(s)	60, 140
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	4 cut(s)	47, 60, 345, 415
XceI	RCATGY	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.