Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014689

Physical Location & Seq

Genomic Coordinates Forward (+)

37208506 .. 37209615

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1258500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGACTGTGTTTTGTGCGAGTACTGATATCTGGAAAAGCTATGCTGCAAGGATTATGGCTATATCTATCCTCCTTTTCATTATTGTTCAATTATCGCAGGTTCTCAATTCCAAATCAGGAGCCAAGTCGCAGTTTTGGTTGCGCTCGGTGTTTCAGCCTTGGATCCAGTACATGTGGAGGCGAATTGCGTATGCAAAGCACAAACATGTTATTATCAGGAATCAACAACATCTAAAAATGCGCTTTGGAAGTCTCCTTAGAGAAGACAGTGAACCTAATGAAGAAAATAGAGCAAAGTTATTGTACGGATCAGCAACCATGAACAACGTCCTGTTCCTGTCGGTATTTTTGGCCCTTGTTTACTTTAGAGAGTTAATGTGGGACTTCTCAGCAGAAGTTCTCATTATGCTCATTGTTTGTGTTGTGATAAGGGTTTTCTGCAGTTTCCGCAGTGTCTTCCCTCTTTGGACATCTTCGATCACTTTCCTACCTTACCCTTTCACCATATCACTGATTTATGTCCTGGATTATATTTTCGGTTGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

183

Amino Acids

21.45

Weight (kDa)

9.63

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10820 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990
malus_domestica	MD11G1258500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0129111 RchiOBHm_Chr2g0129121
rosa_laevigata	RLG00000019056
rosa_multiflora	Rmu_sc0009045.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114840
rosa_rugosa	Rorug02G0284900
rosa_samantha	Rh2AG337000 Rh2BG345000 Rh2CG324400 Rh2DG361800
rosa_wichuraiana	Rw2G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	3 cut(s)	157, 170, 316
AfaI	GTAC	3 cut(s)	22, 170, 305
AflIII	ACRYGT	2 cut(s)	171, 205
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	522
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	157, 170, 316
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	144, 243
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	1 cut(s)	493
BamHI	GGATCC	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	270, 448
BbvI	GCAGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	121, 164
BmrFI	CCNGG	1 cut(s)	524
BpiI	GAAGAC	2 cut(s)	270, 448
BsaJI	CCNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	162, 308, 477
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	401
BspLI	GGNNCC	2 cut(s)	121, 164
BspMAI	CTGCAG	1 cut(s)	443
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	157, 170, 316
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	3 cut(s)	162, 308, 477
BssT1I	CCWWGG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	7, 269
BstDEI	CTNAG	2 cut(s)	257, 388
BstHHI	GCGC	2 cut(s)	144, 243
BstKTI	GATC	3 cut(s)	165, 311, 480
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	3 cut(s)	162, 308, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstNI	CCWGG	1 cut(s)	524
BstNSI	RCATGY	2 cut(s)	175, 209
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	270, 448
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	3 cut(s)	274, 457, 509
BveI	ACCTGC	1 cut(s)	88
CfoI	GCGC	2 cut(s)	144, 243
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	21, 169, 304
CviAII	CATG	3 cut(s)	172, 206, 319
CviJI	RGCY	5 cut(s)	39, 59, 122, 157, 353
CviKI_1	RGCY	5 cut(s)	39, 59, 122, 157, 353
CviQI	GTAC	3 cut(s)	21, 169, 304
DdeI	CTNAG	2 cut(s)	257, 388
DpnI	GATC	3 cut(s)	164, 310, 479
DpnII	GATC	3 cut(s)	162, 308, 477
Eco130I	CCWWGG	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	522
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	3 cut(s)	175, 209, 322
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	3 cut(s)	171, 205, 318
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
GlaI	GCGC	2 cut(s)	143, 242
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	144, 243
Hin1II	CATG	3 cut(s)	175, 209, 322
Hin6I	GCGC	2 cut(s)	142, 241
HinP1I	GCGC	2 cut(s)	142, 241
HinfI	GANTC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	272, 361
Hpy188III	TCNNGA	3 cut(s)	31, 117, 217
Hpy8I	GTNNAC	2 cut(s)	272, 361
HpyCH4III	ACNGT	2 cut(s)	7, 269
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	3 cut(s)	47, 194, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpyF3I	CTNAG	2 cut(s)	257, 388
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	175, 209, 322
HspAI	GCGC	2 cut(s)	142, 241
Kzo9I	GATC	3 cut(s)	162, 308, 477
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	9 cut(s)	16, 83, 102, 179, 202, 344, 350, 509, 536
Lsp1109I	GCAGC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	327
MalI	GATC	3 cut(s)	164, 310, 479
MboI	GATC	3 cut(s)	162, 308, 477
MboII	GAAGA	4 cut(s)	275, 293, 448, 465
MflI	RGATCY	1 cut(s)	162
MluCI	AATT	3 cut(s)	89, 106, 183
MnlI	CCTC	3 cut(s)	80, 171, 471
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	447
NdeII	GATC	3 cut(s)	162, 308, 477
NlaIII	CATG	3 cut(s)	175, 209, 322
NlaIV	GGNNCC	2 cut(s)	121, 164
NspI	RCATGY	2 cut(s)	175, 209
PciI	ACATGT	2 cut(s)	171, 205
PfeI	GAWTC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	46
PscI	ACATGT	2 cut(s)	171, 205
Psp6I	CCWGG	1 cut(s)	522
PspGI	CCWGG	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	121, 164
PspPI	GGNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	3 cut(s)	22, 170, 305
RsaNI	GTAC	3 cut(s)	21, 169, 304
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	162, 308, 477
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	524
SetI	ASST	5 cut(s)	41, 102, 277, 330, 493
SfcI	CTRYAG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	89, 106, 183
SsiI	CCGC	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	7, 269
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	1 cut(s)	476
TasI	AATT	3 cut(s)	89, 106, 183
TatI	WGTACW	2 cut(s)	20, 168
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	3 cut(s)	274, 457, 516
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	67, 294, 335
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	3 cut(s)	274, 457, 516
XceI	RCATGY	2 cut(s)	175, 209
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.