Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014689

Physical Location & Seq

Genomic Coordinates Forward (+)

45693280 .. 45695235

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGCTTGCTAGCTGGATCCAATGTAATGCTTCTCACAATCCTATGGGGGACCTGTCTTCTAGTTGCCAAATGTGACCTTGAAAATTCAGTTGCAGTTGTTGAAAAAGATACTAAGCGTTTTTGCTTAACTGTTTTCACTGCAACTTCGGATAGTAGCTTGCCAATTCTAATTTCACTCATTGTCGCCATCTGTTTTGTGATTGTTTATAGCATGTATTATAATACTAATGCAGGTTTTTATCCTTGGATTCAGAAGAGAAAACTTGCATATGCAAAGCATAAGCATCTGATGTCAGAGATTTTGAAAAAAAACGTGCTTGGAAGATTTCTTACATATGATGGTGATCCTAACAAAGTTGTTATAGAAAAGTTAGAATCCAATTCATTTGATGATGACGTAGATATAAATATTGATGAAGCCATTTCTCTAGTGATGAGAGACTTTGATACAACTCGTGATTCGAAGATTGATGTTGATGAATTCTTCAAAGGAATTTCAAGGTGTAACAAGGCTAAGCGTGCTGCAATGATGGACTGTGGAAAGGTTCCGCTAACAATGAAACTGTTTGATGATTTGATAAGGTATGTCCTAGAAGAACAAGATGAGTATGGGGATCAGATTGATGAGATTGTGGAGACTGTTATAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTGCTGTGATTGCTGATGGCCTGGTTGATGCTGTTGACAACTTCTTTTTTTTTGAAAGGGTTAACTTCTTAACAGCTACAGGTATTCCTACATTCTTTGTCTCATTTGTTATTCTGCCTTTTGTTAGCTCCAGTGAGATTGTGTCCACTCTAAATTTTGTCAGCCAGAAGAAGCAGAGAACCGCATCATTGGCCTACTCTGAGATATATGGATCAGTAAGAATGAGTAACATCTTTTCCCTGGTAGTGTTCTTGGCTCGTGTACATTTGAAATCTGACATGGAGCTTCTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 Na_Ca_ex

Protein Analysis

334

Amino Acids

37.45

Weight (kDa)

5.15

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10820 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990 FvH4_6g26990
malus_domestica	MD11G1258500.v1.1
rosa_chinensis	RchiOBHm_Chr2g0129111 RchiOBHm_Chr2g0129121
rosa_laevigata	RLG00000019056
rosa_multiflora	Rmu_sc0009045.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114840
rosa_rugosa	Rorug02G0284900
rosa_samantha	Rh2AG337000 Rh2BG345000 Rh2CG324400 Rh2DG361800
rosa_wichuraiana	Rw2G027330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	222, 647
Acc36I	ACCTGC	1 cut(s)	224
AciI	CCGC	2 cut(s)	551, 888
AclWI	GGATC	5 cut(s)	12, 25, 341, 624, 925
AcsI	RAATTY	4 cut(s)	85, 482, 495, 859
AfaI	GTAC	2 cut(s)	678, 969
AgsI	TTSAA	7 cut(s)	83, 104, 307, 490, 501, 761, 976
AjnI	CCWGG	2 cut(s)	726, 945
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	5 cut(s)	14, 159, 782, 834, 991
AluI	AGCT	5 cut(s)	14, 159, 782, 834, 991
Alw26I	GTCTC	3 cut(s)	435, 632, 811
AlwI	GGATC	5 cut(s)	12, 25, 341, 624, 925
AoxI	GGCC	2 cut(s)	724, 897
ApeKI	GCWGC	2 cut(s)	524, 707
ApoI	RAATTY	4 cut(s)	85, 482, 495, 859
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	356
AsuII	TTCGAA	1 cut(s)	464
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	316, 348
BauI	CACGAG	2 cut(s)	456, 963
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	511, 694
BccI	CCATC	4 cut(s)	197, 335, 526, 716
BciT130I	CCWGG	2 cut(s)	728, 947
BcoDI	GTCTC	3 cut(s)	435, 632, 811
BfaI	CTAG	4 cut(s)	11, 62, 431, 593
BfmI	CTRYAG	1 cut(s)	783
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	2 cut(s)	525, 708
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	2 cut(s)	526, 709
BmcAI	AGTACT	1 cut(s)	678
Bme1390I	CCNGG	2 cut(s)	728, 947
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	4 cut(s)	19, 52, 549, 697
BmrFI	CCNGG	2 cut(s)	728, 947
BmsI	GCATC	3 cut(s)	295, 724, 899
BmtI	GCTAGC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	820
Bpu1102I	GCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	245, 945
Bse1I	ACTGG	2 cut(s)	662, 837
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	728, 947
BseDI	CCNNGG	2 cut(s)	245, 945
BseJI	GATNNNNATC	1 cut(s)	345
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	2 cut(s)	662, 837
BseXI	GCAGC	2 cut(s)	511, 694
BshFI	GGCC	2 cut(s)	726, 899
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	3 cut(s)	435, 632, 811
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	726, 899
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	967
Bsp143I	GATC	4 cut(s)	17, 346, 616, 917
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	2 cut(s)	551, 888
BspANI	GGCC	2 cut(s)	726, 899
BspCNI	CTCAG	1 cut(s)	898
BspLI	GGNNCC	4 cut(s)	19, 52, 549, 697
BspMI	ACCTGC	1 cut(s)	224
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	5 cut(s)	12, 25, 341, 624, 925
BspT104I	TTCGAA	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	967
BsrI	ACTGG	2 cut(s)	662, 837
BssECI	CCNNGG	2 cut(s)	245, 945
BssMI	GATC	4 cut(s)	17, 346, 616, 917
BssSI	CACGAG	2 cut(s)	456, 963
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	2 cut(s)	456, 963
Bst2UI	CCWGG	2 cut(s)	728, 947
Bst4CI	ACNGT	4 cut(s)	133, 539, 567, 643
Bst6I	CTCTTC	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	967
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	5 cut(s)	8, 12, 161, 522, 663
BstDEI	CTNAG	3 cut(s)	114, 516, 906
BstKTI	GATC	4 cut(s)	20, 349, 619, 920
BstMAI	GTCTC	3 cut(s)	435, 632, 811
BstMBI	GATC	4 cut(s)	17, 346, 616, 917
BstMWI	GCNNNNNNNGC	4 cut(s)	521, 671, 716, 896
BstNI	CCWGG	2 cut(s)	728, 947
BstNSI	RCATGY	2 cut(s)	217, 665
BstSCI	CCNGG	2 cut(s)	726, 945
BstSFI	CTRYAG	1 cut(s)	783
BstV1I	GCAGC	2 cut(s)	511, 694
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	726, 899
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 844
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	5 cut(s)	8, 12, 161, 522, 663
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	677, 968
CviAII	CATG	3 cut(s)	214, 662, 985
CviQI	GTAC	2 cut(s)	677, 968
DdeI	CTNAG	3 cut(s)	114, 516, 906
DpnI	GATC	4 cut(s)	19, 348, 618, 919
DpnII	GATC	4 cut(s)	17, 346, 616, 917
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	726, 945
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	3 cut(s)	217, 665, 988
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	3 cut(s)	213, 661, 984
FauNDI	CATATG	2 cut(s)	271, 337
Fnu4HI	GCNGC	2 cut(s)	525, 708
Fsp4HI	GCNGC	2 cut(s)	525, 708
FspBI	CTAG	4 cut(s)	11, 62, 431, 593
GluI	GCNGC	2 cut(s)	525, 708
GsuI	CTGGAG	1 cut(s)	820
HaeIII	GGCC	2 cut(s)	726, 899
Hin1II	CATG	3 cut(s)	217, 665, 988
HincII	GTYRAC	2 cut(s)	742, 769
HindII	GTYRAC	2 cut(s)	742, 769
HinfI	GANTC	3 cut(s)	250, 377, 461
HpaI	GTTAAC	1 cut(s)	769
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	4 cut(s)	742, 769, 852, 968
Hpy188I	TCNGA	7 cut(s)	151, 255, 291, 298, 621, 907, 982
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	4 cut(s)	742, 769, 852, 968
HpyCH4III	ACNGT	4 cut(s)	133, 539, 567, 643
HpyCH4IV	ACGT	2 cut(s)	315, 399
HpyCH4V	TGCA	7 cut(s)	95, 143, 233, 269, 275, 527, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	521, 671, 716, 896
HpyF3I	CTNAG	3 cut(s)	114, 516, 906
HpySE526I	ACGT	2 cut(s)	315, 399
Hsp92II	CATG	3 cut(s)	217, 665, 988
KspAI	GTTAAC	1 cut(s)	769
Kzo9I	GATC	4 cut(s)	17, 346, 616, 917
LmnI	GCTCC	2 cut(s)	839, 988
Lsp1109I	GCAGC	2 cut(s)	511, 694
LweI	GCATC	3 cut(s)	295, 724, 899
MaeI	CTAG	4 cut(s)	11, 62, 431, 593
MaeII	ACGT	2 cut(s)	315, 399
MaeIII	GTNAC	3 cut(s)	74, 506, 932
MalI	GATC	4 cut(s)	19, 348, 618, 919
MboI	GATC	4 cut(s)	17, 346, 616, 917
MboII	GAAGA	7 cut(s)	50, 268, 336, 478, 478, 608, 886
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	7 cut(s)	85, 165, 171, 382, 482, 495, 859
MnlI	CCTC	1 cut(s)	676
MseI	TTAA	3 cut(s)	128, 768, 776
MspR9I	CCNGG	2 cut(s)	728, 947
MvaI	CCWGG	2 cut(s)	728, 947
MwoI	GCNNNNNNNGC	4 cut(s)	521, 671, 716, 896
NdeI	CATATG	2 cut(s)	271, 337
NdeII	GATC	4 cut(s)	17, 346, 616, 917
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	217, 665, 988
NlaIV	GGNNCC	4 cut(s)	19, 52, 549, 697
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	2 cut(s)	217, 665
NspV	TTCGAA	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	665
PfeI	GAWTC	3 cut(s)	250, 377, 461
PkrI	GCNGC	2 cut(s)	526, 709
PpuMI	RGGWCCY	1 cut(s)	51
PsiI	TTATAA	2 cut(s)	222, 647
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	726, 945
PspGI	CCWGG	2 cut(s)	726, 945
PspN4I	GGNNCC	4 cut(s)	19, 52, 549, 697
PspPI	GGNCC	1 cut(s)	51
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	2 cut(s)	678, 969
RsaNI	GTAC	2 cut(s)	677, 968
SaqAI	TTAA	3 cut(s)	128, 768, 776
SatI	GCNGC	2 cut(s)	525, 708
Sau3AI	GATC	4 cut(s)	17, 346, 616, 917
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	1 cut(s)	678
ScrFI	CCNGG	2 cut(s)	728, 947
SfaNI	GCATC	3 cut(s)	295, 724, 899
SfcI	CTRYAG	1 cut(s)	783
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	1 cut(s)	51
SphI	GCATGC	1 cut(s)	665
Sse9I	AATT	7 cut(s)	85, 165, 171, 382, 482, 495, 859
SsiI	CCGC	2 cut(s)	551, 888
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	4 cut(s)	11, 62, 431, 593
StyD4I	CCNGG	2 cut(s)	726, 945
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	4 cut(s)	133, 539, 567, 643
TaiI	ACGT	2 cut(s)	318, 402
TaqI	TCGA	1 cut(s)	464
TasI	AATT	7 cut(s)	85, 165, 171, 382, 482, 495, 859
TatI	WGTACW	2 cut(s)	676, 967
TfiI	GAWTC	3 cut(s)	250, 377, 461
Tru1I	TTAA	3 cut(s)	128, 768, 776
Tru9I	TTAA	3 cut(s)	128, 768, 776
TscAI	CASTG	2 cut(s)	145, 844
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	2 cut(s)	524, 707
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	4 cut(s)	375, 432, 495, 575
TspRI	CASTG	2 cut(s)	145, 844
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	4 cut(s)	85, 482, 495, 859
XceI	RCATGY	2 cut(s)	217, 665
XspI	CTAG	4 cut(s)	11, 62, 431, 593
ZrmI	AGTACT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.