Rh2AG337000

Sodium/calcium exchanger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014689
Physical Location & Seq
Forward (+)
48871897 .. 48872915
1019 bp
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UTR
Exon/CDS
Intron
Rh2AG337000.1

Sequence Viewer

Length: 462 bp
ATGTCAGAGATTCTAAAACAGTTTAATACAAACACGATTGGAAGATTTCTTACAGATGATGGTGATCCTAACAAAGTTGTTATAGAAAATGATGAGGACTTTGATACAACTCGTGATTTGAAGATTGATGTTGATGAATTCTTCAAAGGAATTTCAAGGTGTAACAAGGCTAAGCGTGCTGCAATGATGGACTGTGGAATGGTTCCGCTATCAATGAAACTGTTTGATGATTTTGATAAGTTAACAAAGGAAGAACAAGATCGGTATGGGGATCAGATTGATGAGATTGTAGGAGGATATTATAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTCCTATATATGGATCAGTAAGAATGAGCAACATCTTTTCCCTGGTAGTGTTCTTGGCTCTTGTGTACATTTGAAATCTGACATGGAGCTTCTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 Na_Ca_ex

Protein Analysis

153

Amino Acids

17.34

Weight (kDa)

4.84

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
AciI CCGC 1 cut(s) 206
AclWI GGATC 3 cut(s) 59, 279, 383
AcsI RAATTY 2 cut(s) 137, 150
AfaI GTAC 2 cut(s) 334, 429
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 4 cut(s) 121, 145, 156, 436
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 1 cut(s) 451
AluI AGCT 1 cut(s) 451
AlwI GGATC 3 cut(s) 59, 279, 383
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 2 cut(s) 137, 150
AsuHPI GGTGA 1 cut(s) 74
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BauI CACGAG 1 cut(s) 111
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 53, 181
BciT130I CCWGG 1 cut(s) 405
BisI GCNGC 1 cut(s) 180
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 181
BmcAI AGTACT 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 204, 353
BmrFI CCNGG 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 403
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 4 cut(s) 64, 259, 271, 375
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 204, 353
BspPI GGATC 3 cut(s) 59, 279, 383
BsrDI GCAATG 1 cut(s) 189
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 4 cut(s) 64, 259, 271, 375
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 21, 194, 222
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 177, 319
BstDEI CTNAG 1 cut(s) 171
BstKTI GATC 4 cut(s) 67, 262, 274, 378
BstMBI GATC 4 cut(s) 64, 259, 271, 375
BstMWI GCNNNNNNNGC 2 cut(s) 176, 327
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 177, 319
Csp6I GTAC 2 cut(s) 333, 428
CviAII CATG 2 cut(s) 318, 445
CviJI RGCY 3 cut(s) 170, 420, 451
CviKI_1 RGCY 3 cut(s) 170, 420, 451
CviQI GTAC 2 cut(s) 333, 428
DdeI CTNAG 1 cut(s) 171
DpnI GATC 4 cut(s) 66, 261, 273, 377
DpnII GATC 4 cut(s) 64, 259, 271, 375
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 2 cut(s) 321, 448
FaiI YATR 8 cut(s) 83, 267, 303, 319, 369, 371, 373, 446
FatI CATG 2 cut(s) 317, 444
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 321, 448
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 1 cut(s) 10
HpaI GTTAAC 1 cut(s) 243
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 243, 428
Hpy188I TCNGA 3 cut(s) 7, 276, 442
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 243, 428
HpyCH4III ACNGT 3 cut(s) 21, 194, 222
HpyCH4V TGCA 2 cut(s) 182, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 327
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 321, 448
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 4 cut(s) 64, 259, 271, 375
LmnI GCTCC 2 cut(s) 368, 448
LpnPI CCDG 4 cut(s) 299, 333, 390, 417
Lsp1109I GCAGC 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 66, 261, 273, 377
MboI GATC 4 cut(s) 64, 259, 271, 375
MboII GAAGA 4 cut(s) 54, 133, 133, 263
MluCI AATT 2 cut(s) 137, 150
MnlI CCTC 3 cut(s) 88, 287, 332
MseI TTAA 2 cut(s) 24, 242
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 176, 327
NdeII GATC 4 cut(s) 64, 259, 271, 375
NlaIII CATG 2 cut(s) 321, 448
NlaIV GGNNCC 2 cut(s) 204, 353
NspI RCATGY 1 cut(s) 321
PaeI GCATGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 181
PsiI TTATAA 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 204, 353
RsaI GTAC 2 cut(s) 334, 429
RsaNI GTAC 2 cut(s) 333, 428
SaqAI TTAA 2 cut(s) 24, 242
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 4 cut(s) 64, 259, 271, 375
ScaI AGTACT 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 405
SetI ASST 2 cut(s) 161, 453
SphI GCATGC 1 cut(s) 321
Sse9I AATT 2 cut(s) 137, 150
SsiI CCGC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 3 cut(s) 21, 194, 222
TasI AATT 2 cut(s) 137, 150
TatI WGTACW 2 cut(s) 332, 427
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 24, 242
Tru9I TTAA 2 cut(s) 24, 242
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 150, 230
XapI RAATTY 2 cut(s) 137, 150
XceI RCATGY 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.