Rh2DG361800

Sodium/calcium exchanger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014689
Physical Location & Seq
Forward (+)
51136968 .. 51139822
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG361800.1

Sequence Viewer

Length: 378 bp
ATGGGCTTGCTAGCTGGATCCAATGTAATGCTTATCACAATCCTATGGGGGACCTGTCTTCTAGTTGCCAAATGTGACCTTGAAAATTCAGTTGCAGTTGTTGAAAAAGATACTAAGCGTTTTGGCTTAACCGGATCTGGAGTAGTGAGCACAGATATTTGGACAAGCTATGCTGCAGGGATCATGGTTATCTCCATTATTCCTTTTATTGATGTTGATGAATTCTTCAAAGGGATTTCAAGGTGTAACAAGGCTAAGCGTGCTGCAATGATGGACTGTGGAAAGGTTCCGCTATCAATGAAACTGTTTGATGATTTTGATAAGGTATATATAGCAATGAGGGTTGCGTTTACAAAGAAAAGCCAGTTTGGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 Na_Ca_ex

Protein Analysis

125

Amino Acids

13.67

Weight (kDa)

8.72

Isoelectric Point (pI)

18.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AclWI GGATC 4 cut(s) 12, 25, 142, 188
AcsI RAATTY 2 cut(s) 85, 221
AgsI TTSAA 4 cut(s) 83, 104, 229, 240
AluBI AGCT 2 cut(s) 14, 168
AluI AGCT 2 cut(s) 14, 168
Alw21I GWGCWC 1 cut(s) 152
AlwI GGATC 4 cut(s) 12, 25, 142, 188
ApeKI GCWGC 2 cut(s) 173, 263
ApoI RAATTY 2 cut(s) 85, 221
AspS9I GGNCC 1 cut(s) 51
AsuNHI GCTAGC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 51
BamHI GGATCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 160, 250
BccI CCATC 1 cut(s) 265
BfaI CTAG 2 cut(s) 11, 62
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 2 cut(s) 174, 264
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 2 cut(s) 175, 265
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 3 cut(s) 19, 52, 288
BmtI GCTAGC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 2 cut(s) 273, 342
BseMI GCAATG 2 cut(s) 273, 342
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 2 cut(s) 160, 250
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 3 cut(s) 17, 134, 180
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 1 cut(s) 290
BspLI GGNNCC 3 cut(s) 19, 52, 288
BspMAI CTGCAG 1 cut(s) 178
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 4 cut(s) 12, 25, 142, 188
BsrDI GCAATG 2 cut(s) 273, 342
BsrI ACTGG 1 cut(s) 364
BssMI GATC 3 cut(s) 17, 134, 180
Bst4CI ACNGT 2 cut(s) 278, 306
BstC8I GCNNGC 3 cut(s) 8, 12, 261
BstDEI CTNAG 2 cut(s) 114, 255
BstKTI GATC 3 cut(s) 20, 137, 183
BstMBI GATC 3 cut(s) 17, 134, 180
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 160, 250
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 17, 134
BstYI RGATCY 2 cut(s) 17, 134
Cac8I GCNNGC 3 cut(s) 8, 12, 261
Cfr13I GGNCC 1 cut(s) 51
CviAII CATG 1 cut(s) 184
CviJI RGCY 6 cut(s) 6, 14, 126, 168, 254, 363
CviKI_1 RGCY 6 cut(s) 6, 14, 126, 168, 254, 363
DdeI CTNAG 2 cut(s) 114, 255
DpnI GATC 3 cut(s) 19, 136, 182
DpnII GATC 3 cut(s) 17, 134, 180
Eco47I GGWCC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 221
FaeI CATG 1 cut(s) 187
FaiI YATR 6 cut(s) 46, 171, 185, 328, 330, 332
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 174, 264
Fsp4HI GCNGC 2 cut(s) 174, 264
FspBI CTAG 2 cut(s) 11, 62
GluI GCNGC 2 cut(s) 174, 264
GsuI CTGGAG 1 cut(s) 159
HapII CCGG 1 cut(s) 132
Hin1II CATG 1 cut(s) 187
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 351
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 351
HpyCH4III ACNGT 2 cut(s) 278, 306
HpyCH4V TGCA 3 cut(s) 95, 176, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 114, 255
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 3 cut(s) 17, 134, 180
LpnPI CCDG 4 cut(s) 67, 123, 145, 162
Lsp1109I GCAGC 2 cut(s) 160, 250
MaeI CTAG 2 cut(s) 11, 62
MaeIII GTNAC 2 cut(s) 74, 245
MalI GATC 3 cut(s) 19, 136, 182
MboI GATC 3 cut(s) 17, 134, 180
MboII GAAGA 2 cut(s) 50, 217
MflI RGATCY 2 cut(s) 17, 134
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 2 cut(s) 85, 221
MnlI CCTC 1 cut(s) 333
MseI TTAA 1 cut(s) 128
MspI CCGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 3 cut(s) 17, 134, 180
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 3 cut(s) 19, 52, 288
NmuCI GTSAC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 175, 265
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 19, 52, 288
PspPI GGNCC 1 cut(s) 51
PspPPI RGGWCCY 1 cut(s) 51
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 17, 134
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 2 cut(s) 174, 264
Sau3AI GATC 3 cut(s) 17, 134, 180
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 1 cut(s) 152
SetI ASST 7 cut(s) 16, 56, 81, 170, 245, 288, 327
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 1 cut(s) 51
Sse9I AATT 2 cut(s) 85, 221
SsiI CCGC 1 cut(s) 290
SspMI CTAG 2 cut(s) 11, 62
TaaI ACNGT 2 cut(s) 278, 306
TasI AATT 2 cut(s) 85, 221
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 173, 263
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 234, 314
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 2 cut(s) 85, 221
XspI CTAG 2 cut(s) 11, 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.