RchiOBHm_Chr2g0129121

Sodium/calcium exchanger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014689
Physical Location & Seq
Forward (+)
44813537 .. 44814237
701 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50081

Sequence Viewer

Length: 423 bp
ATGAGAGACGTTGATACAACTCGTGATTCAAAGATTGATGTTGATGAATTCTTCAAAGGGATTTCAAGGTGTAACAAGGCTAAGCGTGCTGCAATGATGGACTGTGGAAAGGTTCCGCTATCAATGAAACTGTTTGATGATTTTGATAAGGAGGATATTATAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTGCTGTGATTGCTGATCCCCCTGTTGATGCTGTTGACAACTTCCTTTTTTTGAAAGGCTCCAGTGAGATTGTGTCCACTCTAAATTTTGTCAGCCAGAAGAAGCAGAGAACAGCATCATTGGCCTACTCTGAGATATATGGATCAGTAAGAATGAGCAACATCTTTTCCCTGGTAGTGTTCTTGGCTCTTGTGTACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_7 Na_Ca_ex

Protein Analysis

140

Amino Acids

15.58

Weight (kDa)

6.56

Isoelectric Point (pI)

22.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
AciI CCGC 1 cut(s) 116
AclWI GGATC 2 cut(s) 230, 370
AcsI RAATTY 2 cut(s) 47, 304
AfaI GTAC 2 cut(s) 192, 416
AgsI TTSAA 4 cut(s) 30, 55, 66, 274
AjnI CCWGG 1 cut(s) 390
AlwI GGATC 2 cut(s) 230, 370
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 2 cut(s) 89, 221
ApoI RAATTY 2 cut(s) 47, 304
BauI CACGAG 1 cut(s) 21
BbvI GCAGC 2 cut(s) 76, 208
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 392
BisI GCNGC 2 cut(s) 90, 222
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 2 cut(s) 91, 223
BmcAI AGTACT 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 392
BmiI GGNNCC 3 cut(s) 114, 211, 280
BmrFI CCNGG 1 cut(s) 392
BmsI GCATC 2 cut(s) 238, 344
BpmI CTGGAG 1 cut(s) 265
Bpu1102I GCTNAGC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 176, 282
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 176, 282
BseXI GCAGC 2 cut(s) 76, 208
BshFI GGCC 1 cut(s) 344
BsnI GGCC 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 2 cut(s) 235, 362
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 1 cut(s) 116
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 114, 211, 280
BspPI GGATC 2 cut(s) 230, 370
BsrDI GCAATG 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 414
BsrI ACTGG 2 cut(s) 176, 282
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 235, 362
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 104, 132
BstAUI TGTACA 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 87, 177
BstDEI CTNAG 2 cut(s) 81, 351
BstKTI GATC 2 cut(s) 238, 365
BstMBI GATC 2 cut(s) 235, 362
BstMWI GCNNNNNNNGC 4 cut(s) 86, 185, 230, 341
BstNI CCWGG 1 cut(s) 392
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 76, 208
BsuRI GGCC 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 87, 177
Csp6I GTAC 2 cut(s) 191, 415
CviAII CATG 1 cut(s) 176
CviJI RGCY 5 cut(s) 80, 279, 315, 344, 407
CviKI_1 RGCY 5 cut(s) 80, 279, 315, 344, 407
CviQI GTAC 2 cut(s) 191, 415
DdeI CTNAG 2 cut(s) 81, 351
DpnI GATC 2 cut(s) 237, 364
DpnII GATC 2 cut(s) 235, 362
EcoRI GAATTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 390
FaeI CATG 1 cut(s) 179
FaiI YATR 4 cut(s) 161, 177, 358, 360
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 90, 222
Fsp4HI GCNGC 2 cut(s) 90, 222
GluI GCNGC 2 cut(s) 90, 222
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 1 cut(s) 344
Hin1II CATG 1 cut(s) 179
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 26
Hpy166II GTNNAC 3 cut(s) 256, 297, 415
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 3 cut(s) 256, 297, 415
HpyCH4III ACNGT 2 cut(s) 104, 132
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 92, 167
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 185, 230, 341
HpyF3I CTNAG 2 cut(s) 81, 351
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 1 cut(s) 179
Kzo9I GATC 2 cut(s) 235, 362
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 7 cut(s) 157, 191, 255, 295, 329, 377, 404
Lsp1109I GCAGC 2 cut(s) 76, 208
LweI GCATC 2 cut(s) 238, 344
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 237, 364
MboI GATC 2 cut(s) 235, 362
MboII GAAGA 2 cut(s) 43, 331
MluCI AATT 2 cut(s) 47, 304
MnlI CCTC 2 cut(s) 145, 190
MspR9I CCNGG 1 cut(s) 392
MvaI CCWGG 1 cut(s) 392
MwoI GCNNNNNNNGC 4 cut(s) 86, 185, 230, 341
NdeII GATC 2 cut(s) 235, 362
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 3 cut(s) 114, 211, 280
NspI RCATGY 1 cut(s) 179
PaeI GCATGC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 91, 223
PsiI TTATAA 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 3 cut(s) 114, 211, 280
RsaI GTAC 2 cut(s) 192, 416
RsaNI GTAC 2 cut(s) 191, 415
SatI GCNGC 2 cut(s) 90, 222
Sau3AI GATC 2 cut(s) 235, 362
ScaI AGTACT 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 392
SetI ASST 3 cut(s) 12, 71, 114
SfaNI GCATC 2 cut(s) 238, 344
SphI GCATGC 1 cut(s) 179
Sse9I AATT 2 cut(s) 47, 304
SsiI CCGC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 104, 132
TaiI ACGT 1 cut(s) 12
TasI AATT 2 cut(s) 47, 304
TatI WGTACW 2 cut(s) 190, 414
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 289
TseI GCWGC 2 cut(s) 89, 221
TspDTI ATGAA 2 cut(s) 60, 140
TspRI CASTG 1 cut(s) 289
XapI RAATTY 2 cut(s) 47, 304
XceI RCATGY 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.