Rh2AG334300

Sodium/calcium exchanger protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
48419927 .. 48424064
4138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG334300.1

Sequence Viewer

Length: 1737 bp
ATGGCAAAGAAAATTGCATTATTCCTTTATTTCCTATCCATCATGCTAGTTAATCTAACCAGCTTTGGCCAAAGTCGTTCTATTGCTACAAGTGACTTCAATTTAGTCTCTGATGGAGTAAACCACACTACTGGGGATAAACCGAATTTTCTTTGGTTAAAGCATAGCTTGTTTGCATCTGATAGCTGTGATGAGACATATGGGTTCTTGCCATGCACCAACACAGTCCTTGGTAATATCTTCCTCATTATCGTCTATGGTTACTTGATGTTCCTTTCAGCCAAGTTATTGTCAGCTGGAAGTGAGATTCTGCTGCAAATTTTAGGACCTGGTATCATAGGGGGCCTCTTCTTGCCTCTGTTGAGTGCTGTACCTGATGCCACCATTATCCTTGCATCAGGACTTTCTGGGGACACAGCAACGGCACAAAGTCAGGTCTCCGTTGGAATGGGCTTGCTAGCTGGATCCAATGTAATGCTTCTCACAATCCTATGGGGGACCTGTCTTCTAGTTGGCGAATGTGACCTTGAAAATTCAGTTGCAGTTGATGAAAAAGATACAAAGCGTTTTAGCTTAACTGGATCTGGAGTGAGCACAGATATTTGGACAAGCTATGCTGCATGGATCATGGTTATCTCCATTATTCCTTTTGTAATAGTCCAACTACCTCAAGTTTTCACTGCGACTTTGGATAGTAGCTTGCCAATTCTAAGTTCACTCATTGTTGCAATCTGTTTTGTGATCGCTTATAGCATCTATCAGATTTTTCAGCCTTGGATTCAGAAGAGAAGACTTGCATATGCAAAGCATAAGCATGTGATGTCAGAGATTCTAAAACAGTTGAAAACAAACGCGCTTGGAAAATTGCTTACAGATGATGGTGATCCTAACAAAGTTGTTATAGAGAAGTTATTCAGGACACTTGATCAGAACTCGGATGGTTATTTGAACACCACAGAGTTAAGATCTTTGATAATAGGAATCCAATTTGATGATGACGTAGATATAAATATCGATGAAGTCGTTTCTCAAGTAATGAGAGACTTTGACACAACTCGTGATTCGAAGATTGATGTTGATGAATTTTACAAAGGAATTTCAAGGTGGCTTAACAAGGCTAAGCGTGCTGCAATGATGGTCCGTGGAAAGGCTCAGCTATCAATGAAACTGTTAGATGATTTTGATAAGCAAACAAAGGAAGAACAAGATCGGTATGGGGATCAGATTGATGAGATTGTGGAGGATGTTAAAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTGCTGTGGTTGCTGATCCCCTTGTTGATGCTGTTGAAAACTTCTCAACAGCTACAAGTATTCCTACATTCTTCGTCTCATTTGTTATTCTGCCTTTTGTTAGCTCCAGTGAGATTGTGTCCACTCTAATTTTTGTCAGCCGGAAGAAGCAGAGAACAGCATCATTGGCCTACTCTGCGATATATGGATCAGTAACAATGAGTAACATCCTCTCCCTGGCAGTGTTCTTGGCTCTTGTATACATTCGAAATCTGACATGGAGCTTCTCGTCCGAAGTTCTTGTCATTATAATTGTCTGCATTCTAATGGGAGTTGTTGCTGGTTTCCGCACCACCTTCCCTGTTTGGATGTCTTTTGGGGCTGTAGCGCTCTATCCACTTTCTCTGTTGCTGGTTTACATTCTTGAATATGTTTTTGGGTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

578

Amino Acids

63.71

Weight (kDa)

5.08

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 80 - 257 5.8e-07 Sodium/calcium exchanger protein
EF-hand_7 PF13499 300 - 366 8.9e-12 EF-hand domain pair
Na_Ca_ex PF01699 426 - 569 3.2e-11 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015661)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1598
AccI GTMKAC 1 cut(s) 1548
AccII CGCG 1 cut(s) 854
AciI CCGC 1 cut(s) 1636
AclWI GGATC 8 cut(s) 459, 472, 589, 632, 878, 1227, 1319, 1504
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 5 cut(s) 145, 318, 532, 1082, 1095
AfaI GTAC 2 cut(s) 372, 1281
AfeI AGCGCT 1 cut(s) 1677
AfiI CCNNNNNNNGG 2 cut(s) 1147, 1525
AgsI TTSAA 7 cut(s) 100, 530, 844, 949, 1101, 1346, 1715
AjnI CCWGG 2 cut(s) 328, 1524
AjuI GAANNNNNNNTTGG 3 cut(s) 697, 729, 1707
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 5 cut(s) 112, 188, 442, 1035, 1390
AlwI GGATC 8 cut(s) 459, 472, 589, 632, 878, 1227, 1319, 1504
Aor51HI AGCGCT 1 cut(s) 1677
AoxI GGCC 3 cut(s) 67, 343, 1476
ApeKI GCWGC 4 cut(s) 313, 617, 1127, 1310
ApoI RAATTY 5 cut(s) 145, 318, 532, 1082, 1095
ArsI GACNNNNNNTTYG 2 cut(s) 1575, 1607
Asp700I GAANNNNTTC 1 cut(s) 911
AspLEI GCGC 2 cut(s) 856, 1678
AspS9I GGNCC 4 cut(s) 326, 343, 498, 1138
AsuHPI GGTGA 1 cut(s) 893
AsuII TTCGAA 2 cut(s) 1064, 1555
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 3 cut(s) 326, 498, 1138
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 1 cut(s) 464
BauI CACGAG 1 cut(s) 1056
BbsI GAAGAC 2 cut(s) 497, 796
Bbv12I GWGCWC 1 cut(s) 596
BbvI GCAGC 4 cut(s) 300, 604, 1114, 1297
BccI CCATC 5 cut(s) 47, 107, 872, 932, 1129
BceAI ACGGC 1 cut(s) 438
BciT130I CCWGG 2 cut(s) 330, 1526
BclI TGATCA 1 cut(s) 925
BcoDI GTCTC 5 cut(s) 112, 188, 442, 1035, 1390
BfaI CTAG 3 cut(s) 47, 458, 509
BfmI CTRYAG 1 cut(s) 1671
BfoI RGCGCY 1 cut(s) 1679
BglII AGATCT 1 cut(s) 965
BisI GCNGC 4 cut(s) 314, 618, 1128, 1311
BlpI GCTNAGC 2 cut(s) 1119, 1152
BlsI GCNGC 4 cut(s) 315, 619, 1129, 1312
BmcAI AGTACT 1 cut(s) 1281
Bme1390I CCNGG 2 cut(s) 330, 1526
Bme18I GGWCC 3 cut(s) 326, 498, 1138
BmgT120I GGNCC 4 cut(s) 326, 343, 498, 1138
BmiI GGNNCC 4 cut(s) 344, 466, 499, 1300
BmrFI CCNGG 2 cut(s) 330, 1526
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 6 cut(s) 185, 367, 404, 762, 1327, 1478
BmtI GCTAGC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 497, 796
BpmI CTGGAG 2 cut(s) 606, 1399
Bpu1102I GCTNAGC 2 cut(s) 1119, 1152
Bpu14I TTCGAA 2 cut(s) 1064, 1555
BpuEI CTTGAG 2 cut(s) 654, 1014
Bsa29I ATCGAT 1 cut(s) 1014
BsaBI GATNNNNATC 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 4 cut(s) 229, 773, 1141, 1524
BsaXI ACNNNNNCTCC 2 cut(s) 1505, 1535
Bsc4I CCNNNNNNNGG 2 cut(s) 1147, 1525
Bse1I ACTGG 4 cut(s) 136, 583, 1265, 1416
Bse3DI GCAATG 1 cut(s) 1137
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 330, 1526
BseCI ATCGAT 1 cut(s) 1014
BseDI CCNNGG 4 cut(s) 229, 773, 1141, 1524
BseGI GGATG 4 cut(s) 943, 1249, 1515, 1662
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 2 cut(s) 1147, 1525
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 1 cut(s) 1166
BseNI ACTGG 4 cut(s) 136, 583, 1265, 1416
BseXI GCAGC 4 cut(s) 300, 604, 1114, 1297
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 3 cut(s) 69, 345, 1478
BshVI ATCGAT 1 cut(s) 1014
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 1 cut(s) 1450
BslFI GGGAC 2 cut(s) 425, 511
BslI CCNNNNNNNGG 2 cut(s) 1147, 1525
BsmAI GTCTC 5 cut(s) 112, 188, 442, 1035, 1390
BsmBI CGTCTC 1 cut(s) 1390
BsmFI GGGAC 2 cut(s) 425, 511
BsmI GAATGC 1 cut(s) 1608
BsnI GGCC 3 cut(s) 69, 345, 1478
Bso31I GGTCTC 1 cut(s) 442
Bsp119I TTCGAA 2 cut(s) 1064, 1555
Bsp1286I GDGCHC 1 cut(s) 596
Bsp1720I GCTNAGC 2 cut(s) 1119, 1152
BspACI CCGC 1 cut(s) 1636
BspANI GGCC 3 cut(s) 69, 345, 1478
BspCNI CTCAG 1 cut(s) 1165
BspDI ATCGAT 1 cut(s) 1014
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 4 cut(s) 344, 466, 499, 1300
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 8 cut(s) 459, 472, 589, 632, 878, 1227, 1319, 1504
BspT104I TTCGAA 2 cut(s) 1064, 1555
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 1137
BsrI ACTGG 4 cut(s) 136, 583, 1265, 1416
BssECI CCNNGG 4 cut(s) 229, 773, 1141, 1524
BssNAI GTATAC 1 cut(s) 1549
BssSI CACGAG 1 cut(s) 1056
BssT1I CCWWGG 2 cut(s) 229, 773
Bst1107I GTATAC 1 cut(s) 1549
Bst2BI CACGAG 1 cut(s) 1056
Bst2UI CCWGG 2 cut(s) 330, 1526
Bst4CI ACNGT 3 cut(s) 226, 840, 1170
Bst6I CTCTTC 2 cut(s) 353, 779
BstBI TTCGAA 2 cut(s) 1064, 1555
BstC8I GCNNGC 5 cut(s) 455, 459, 701, 1125, 1266
BstDEI CTNAG 3 cut(s) 710, 1119, 1152
BstDSI CCRYGG 1 cut(s) 1141
BstF5I GGATG 4 cut(s) 943, 1249, 1515, 1662
BstFNI CGCG 1 cut(s) 854
BstH2I RGCGCY 1 cut(s) 1679
BstHHI GCGC 2 cut(s) 856, 1678
BstMAI GTCTC 5 cut(s) 112, 188, 442, 1035, 1390
BstMWI GCNNNNNNNGC 5 cut(s) 1124, 1274, 1319, 1475, 1484
BstNI CCWGG 2 cut(s) 330, 1526
BstNSI RCATGY 2 cut(s) 818, 1268
BstSCI CCNGG 2 cut(s) 328, 1524
BstSFI CTRYAG 1 cut(s) 1671
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 4 cut(s) 300, 604, 1114, 1297
BstV2I GAAGAC 2 cut(s) 497, 796
BstX2I RGATCY 3 cut(s) 464, 581, 965
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 3 cut(s) 464, 581, 965
BstZ17I GTATAC 1 cut(s) 1549
Bsu15I ATCGAT 1 cut(s) 1014
BsuRI GGCC 3 cut(s) 69, 345, 1478
BsuTUI ATCGAT 1 cut(s) 1014
BtgI CCRYGG 1 cut(s) 1141
BtsCI GGATG 4 cut(s) 943, 1249, 1515, 1662
BtsI GCAGTG 2 cut(s) 678, 1536
BtsIMutI CAGTG 3 cut(s) 678, 1423, 1536
Cac8I GCNNGC 5 cut(s) 455, 459, 701, 1125, 1266
CfoI GCGC 2 cut(s) 856, 1678
Cfr13I GGNCC 4 cut(s) 326, 343, 498, 1138
ClaI ATCGAT 1 cut(s) 1014
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 2 cut(s) 371, 1280
CviAII CATG 7 cut(s) 43, 213, 621, 628, 815, 1265, 1566
CviQI GTAC 2 cut(s) 371, 1280
DdeI CTNAG 3 cut(s) 710, 1119, 1152
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 353, 779
EarI CTCTTC 2 cut(s) 353, 779
Eco130I CCWWGG 2 cut(s) 229, 773
Eco31I GGTCTC 1 cut(s) 442
Eco47I GGWCC 3 cut(s) 326, 498, 1138
Eco47III AGCGCT 1 cut(s) 1677
EcoO109I RGGNCCY 3 cut(s) 326, 343, 498
EcoRII CCWGG 2 cut(s) 328, 1524
EcoT14I CCWWGG 2 cut(s) 229, 773
ErhI CCWWGG 2 cut(s) 229, 773
Esp3I CGTCTC 1 cut(s) 1390
FaeI CATG 7 cut(s) 46, 216, 624, 631, 818, 1268, 1569
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 425, 511
FatI CATG 7 cut(s) 42, 212, 620, 627, 814, 1264, 1565
FauNDI CATATG 2 cut(s) 199, 799
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 1 cut(s) 1548
Fnu4HI GCNGC 4 cut(s) 314, 618, 1128, 1311
FokI GGATG 4 cut(s) 950, 1256, 1502, 1669
Fsp4HI GCNGC 4 cut(s) 314, 618, 1128, 1311
FspBI CTAG 3 cut(s) 47, 458, 509
GlaI GCGC 2 cut(s) 855, 1677
GluI GCNGC 4 cut(s) 314, 618, 1128, 1311
GsuI CTGGAG 2 cut(s) 606, 1399
HaeII RGCGCY 1 cut(s) 1679
HaeIII GGCC 3 cut(s) 69, 345, 1478
HapII CCGG 1 cut(s) 1450
HhaI GCGC 2 cut(s) 856, 1678
Hin1II CATG 7 cut(s) 46, 216, 624, 631, 818, 1268, 1569
Hin6I GCGC 2 cut(s) 854, 1676
HinP1I GCGC 2 cut(s) 854, 1676
HinfI GANTC 5 cut(s) 307, 778, 829, 981, 1061
HpaII CCGG 1 cut(s) 1450
HphI GGTGA 1 cut(s) 893
Hpy166II GTNNAC 5 cut(s) 121, 716, 1431, 1549, 1705
Hpy188III TCNNGA 5 cut(s) 399, 585, 916, 1058, 1712
Hpy8I GTNNAC 5 cut(s) 121, 716, 1431, 1549, 1705
HpyAV CCTTC 1 cut(s) 1654
HpyCH4III ACNGT 3 cut(s) 226, 840, 1170
HpyCH4IV ACGT 1 cut(s) 999
HpyF10VI GCNNNNNNNGC 5 cut(s) 1124, 1274, 1319, 1475, 1484
HpyF3I CTNAG 3 cut(s) 710, 1119, 1152
HpySE526I ACGT 1 cut(s) 999
Hsp92II CATG 7 cut(s) 46, 216, 624, 631, 818, 1268, 1569
HspAI GCGC 2 cut(s) 854, 1676
Ksp22I TGATCA 1 cut(s) 925
LmnI GCTCC 2 cut(s) 1418, 1569
Lsp1109I GCAGC 4 cut(s) 300, 604, 1114, 1297
LweI GCATC 6 cut(s) 185, 367, 404, 762, 1327, 1478
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 3 cut(s) 47, 458, 509
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 5 cut(s) 92, 260, 521, 1501, 1511
MboII GAAGA 9 cut(s) 232, 340, 497, 796, 801, 1078, 1211, 1372, 1465
MflI RGATCY 3 cut(s) 464, 581, 965
MhlI GDGCHC 1 cut(s) 596
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 424, 685
MnlI CCTC 7 cut(s) 254, 356, 366, 678, 1234, 1279, 1529
Mox20I TGGCCA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 911
MscI TGGCCA 1 cut(s) 69
MseI TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1248
MslI CAYNNNNRTG 2 cut(s) 813, 1613
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 1450
MspR9I CCNGG 2 cut(s) 330, 1526
Mva1269I GAATGC 1 cut(s) 1608
MvaI CCWGG 2 cut(s) 330, 1526
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 5 cut(s) 1124, 1274, 1319, 1475, 1484
NdeI CATATG 2 cut(s) 199, 799
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 7 cut(s) 46, 216, 624, 631, 818, 1268, 1569
NlaIV GGNNCC 4 cut(s) 344, 466, 499, 1300
NmuCI GTSAC 2 cut(s) 92, 521
NspI RCATGY 2 cut(s) 818, 1268
NspV TTCGAA 2 cut(s) 1064, 1555
PaeI GCATGC 1 cut(s) 1268
PcsI WCGNNNNNNNCGW 1 cut(s) 1020
PctI GAATGC 1 cut(s) 1608
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 5 cut(s) 307, 778, 829, 981, 1061
PkrI GCNGC 4 cut(s) 315, 619, 1129, 1312
PpuMI RGGWCCY 2 cut(s) 326, 498
PsiI TTATAA 1 cut(s) 1598
Psp5II RGGWCCY 2 cut(s) 326, 498
Psp6I CCWGG 2 cut(s) 328, 1524
PspGI CCWGG 2 cut(s) 328, 1524
PspN4I GGNNCC 4 cut(s) 344, 466, 499, 1300
PspPI GGNCC 4 cut(s) 326, 343, 498, 1138
PspPPI RGGWCCY 2 cut(s) 326, 498
PsuI RGATCY 3 cut(s) 464, 581, 965
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 372, 1281
RsaNI GTAC 2 cut(s) 371, 1280
RseI CAYNNNNRTG 2 cut(s) 813, 1613
SaqAI TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1248
SatI GCNGC 4 cut(s) 314, 618, 1128, 1311
Sau96I GGNCC 4 cut(s) 326, 343, 498, 1138
ScaI AGTACT 1 cut(s) 1281
ScrFI CCNGG 2 cut(s) 330, 1526
SduI GDGCHC 1 cut(s) 596
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 6 cut(s) 185, 367, 404, 762, 1327, 1478
SfcI CTRYAG 1 cut(s) 1671
SfuI TTCGAA 2 cut(s) 1064, 1555
SinI GGWCC 3 cut(s) 326, 498, 1138
SmiMI CAYNNNNRTG 2 cut(s) 813, 1613
SmlI CTYRAG 2 cut(s) 669, 1029
SmoI CTYRAG 2 cut(s) 669, 1029
SphI GCATGC 1 cut(s) 1268
SsiI CCGC 1 cut(s) 1636
SspMI CTAG 3 cut(s) 47, 458, 509
StyD4I CCNGG 2 cut(s) 328, 1524
StyI CCWWGG 2 cut(s) 229, 773
TaaI ACNGT 3 cut(s) 226, 840, 1170
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 3 cut(s) 1014, 1064, 1555
TatI WGTACW 1 cut(s) 1279
TfiI GAWTC 5 cut(s) 307, 778, 829, 981, 1061
Tru1I TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1248
Tru9I TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1248
TscAI CASTG 3 cut(s) 685, 1423, 1536
TseFI GTSAC 2 cut(s) 92, 521
TseI GCWGC 4 cut(s) 313, 617, 1127, 1310
Tsp45I GTSAC 2 cut(s) 92, 521
TspDTI ATGAA 4 cut(s) 564, 1032, 1095, 1178
TspGWI ACGGA 2 cut(s) 430, 1130
TspRI CASTG 3 cut(s) 685, 1423, 1536
VpaK11BI GGWCC 3 cut(s) 326, 498, 1138
XapI RAATTY 5 cut(s) 145, 318, 532, 1082, 1095
XceI RCATGY 2 cut(s) 818, 1268
XmiI GTMKAC 1 cut(s) 1548
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 3 cut(s) 47, 458, 509
ZrmI AGTACT 1 cut(s) 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.