Rh2CG321200

Sodium/calcium exchanger protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
41285425 .. 41288907
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG321200.1

Sequence Viewer

Length: 1740 bp
ATGGCAAAGAAAATTGCATTATTCCTTTATTTCCTATCCATCATGCTAGTTAATCTAACCAGCTTTGGCCAAAGTCGTTCTATTGCTACAAGTGACTTCAATTTAGTGTCTGATGGAGTAAACCACACTACTGGGGATAAACCGAATTTTCTTTGGTTAAAGCATAGCTTGTTTGCATCTGATAGCTGTGATGAGACATATGGATTCTTGCCATGCACCAACACAGTCCTTGGTAATATCTTCCTCATTATCGTCTATGGTTACTTGATGTTCCTTTCAGCCAAGTTATTGTCAGCTGGAAGTGAGATTCTGCTGCAAATTTTAGGACCTGGTATCATAGGGGGTCTCTTCTTGCCTCTGTTGAGTGCTGTACCTGATGCCACCATTATCCTTGCATCAGGACTTTCTGGGGACACGGCAACGGCACAAAGTCAGGTCTCCGTTGGAATGGGCTTGCTAGCTGGATCCAATGTAATGCTTCTCACAATCCTATGGGGGACCTGTCTTCTAGTTGGCAAATGTGACCTTGAAAATTCAGTTGCAGTTGATGAAAAAGATACAAAGCGTTTTAGCTTAACTGGATCTGGAGTGAGCACAGATATTTGGACAAGCTATGCTGCATGGATCATGGTTATCTCCATTATTCCTTTTGTAATAGTCCAACTACCTCAAGTTTTCACTGCAACTTTGGATAGTAGCTTGCCAATTCTAAGTTCACTCATTGTTGCAATCTGTTTTGTGATTGCTTATAGCATCTATCAGATTTTTCAGCCTTGGATTCAGAAGAGAAGACTTGCATATGCAAAGCATAAGCATGTAATGTCAGAGATTCTAAAACAGTTGAAAACAAACGCGCTTGGAAAATTGCTTACAGATGATGGTGATCCTAACAAAGTTGTTATAGAGAAGTTATTCAGGACACTTGATCAGAACTCGGATGGTTATTTGAACACCACAGAGTTAAGATCTTTGATAATAGGAATCCAATTTGATGATGACGTAGATATAAATATCGATGAAGTCGTTTCTCAAGTAATGAGAGACTTTGACACAACTCGTGATTCGAAGATTGATGTTGATGAATTTTTCAAAGGAATTTCAAGGTGGCTTAACAAGGCTAAGCGTGCTGCTGCAATGATGGTCCGTGGAAAGGCTCAGCTATCAATGAAACTGTTAGATGATTTTGATAAGCAAACAAAGGAAGAACAAGATCGGTATGGGGATCAGATTGATGAGATTGTGGAGGATGTTAAAAATGCAAATTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTGCTGTGGTTGCTGATCCCCTTGTTGATGCTGTTGACAACTTCTCAACAGCTACAAGTATTCCTACATTCTTCGTCTCATTTGTTATTCTGCCTTTTGTTAGCTCCAGTGAGATTGTGTCCACTCTAATTTTTGTCAGCCGGAAGAAGCAGAGAACAGCATCATTGGCCTACTCTGCGATATATGGATCAGTAACAATGAGTAACATCCTCTCCCTGGCAGTGTTCTTGGCTCTTGTATACATTCGAAATCTGACATGGAGCTTCTCGTCCGAAGTTCTTGTCATTATAATTGTCTGCATTCTAATGGGAGTTGTTGCTGGTTTCCGCACCACCTTCCCTGTTTGGATGTCTTTTGGGGCTGTAGCGCTCTATCCACTTTCTCTGTTGCTGGTTTACATTCTTGAATATGTTTTTGGGTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

63.75

Weight (kDa)

5.21

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 80 - 257 3.3e-07 Sodium/calcium exchanger protein
EF-hand_7 PF13499 300 - 366 3.7e-11 EF-hand domain pair
Na_Ca_ex PF01699 427 - 570 3.1e-11 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015661)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1601
AccI GTMKAC 1 cut(s) 1551
AccII CGCG 1 cut(s) 854
AciI CCGC 1 cut(s) 1639
AclWI GGATC 8 cut(s) 459, 472, 589, 632, 878, 1230, 1322, 1507
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 5 cut(s) 145, 318, 532, 1082, 1095
AfaI GTAC 2 cut(s) 372, 1284
AfeI AGCGCT 1 cut(s) 1680
AfiI CCNNNNNNNGG 2 cut(s) 1150, 1528
AgsI TTSAA 7 cut(s) 100, 530, 844, 949, 1090, 1101, 1718
AjnI CCWGG 2 cut(s) 328, 1527
AjuI GAANNNNNNNTTGG 3 cut(s) 697, 729, 1710
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 5 cut(s) 188, 350, 442, 1035, 1393
AlwI GGATC 8 cut(s) 459, 472, 589, 632, 878, 1230, 1322, 1507
Aor51HI AGCGCT 1 cut(s) 1680
AoxI GGCC 2 cut(s) 67, 1479
ApeKI GCWGC 5 cut(s) 313, 617, 1127, 1130, 1313
ApoI RAATTY 5 cut(s) 145, 318, 532, 1082, 1095
ArsI GACNNNNNNTTYG 2 cut(s) 1578, 1610
Asp700I GAANNNNTTC 1 cut(s) 911
AspLEI GCGC 2 cut(s) 856, 1681
AspS9I GGNCC 3 cut(s) 326, 498, 1141
AsuHPI GGTGA 1 cut(s) 893
AsuII TTCGAA 2 cut(s) 1064, 1558
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 3 cut(s) 326, 498, 1141
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 1 cut(s) 464
BauI CACGAG 1 cut(s) 1056
BbsI GAAGAC 2 cut(s) 497, 796
Bbv12I GWGCWC 1 cut(s) 596
BbvI GCAGC 5 cut(s) 300, 604, 1114, 1117, 1300
BccI CCATC 5 cut(s) 47, 107, 872, 932, 1132
BceAI ACGGC 2 cut(s) 432, 438
BciT130I CCWGG 2 cut(s) 330, 1529
BclI TGATCA 1 cut(s) 925
BcoDI GTCTC 5 cut(s) 188, 350, 442, 1035, 1393
BfaI CTAG 3 cut(s) 47, 458, 509
BfmI CTRYAG 1 cut(s) 1674
BfoI RGCGCY 1 cut(s) 1682
BglII AGATCT 1 cut(s) 965
BisI GCNGC 5 cut(s) 314, 618, 1128, 1131, 1314
BlpI GCTNAGC 2 cut(s) 1119, 1155
BlsI GCNGC 5 cut(s) 315, 619, 1129, 1132, 1315
BmcAI AGTACT 1 cut(s) 1284
Bme1390I CCNGG 2 cut(s) 330, 1529
Bme18I GGWCC 3 cut(s) 326, 498, 1141
BmgT120I GGNCC 3 cut(s) 326, 498, 1141
BmiI GGNNCC 3 cut(s) 466, 499, 1303
BmrFI CCNGG 2 cut(s) 330, 1529
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 6 cut(s) 185, 367, 404, 762, 1330, 1481
BmtI GCTAGC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 497, 796
BpmI CTGGAG 2 cut(s) 606, 1402
Bpu1102I GCTNAGC 2 cut(s) 1119, 1155
Bpu14I TTCGAA 2 cut(s) 1064, 1558
BpuEI CTTGAG 2 cut(s) 654, 1014
Bsa29I ATCGAT 1 cut(s) 1014
BsaBI GATNNNNATC 1 cut(s) 882
BsaI GGTCTC 2 cut(s) 350, 442
BsaJI CCNNGG 4 cut(s) 229, 773, 1144, 1527
BsaXI ACNNNNNCTCC 2 cut(s) 1508, 1538
Bsc4I CCNNNNNNNGG 2 cut(s) 1150, 1528
Bse1I ACTGG 3 cut(s) 136, 583, 1419
Bse3DI GCAATG 1 cut(s) 1140
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 330, 1529
BseCI ATCGAT 1 cut(s) 1014
BseDI CCNNGG 4 cut(s) 229, 773, 1144, 1527
BseGI GGATG 4 cut(s) 943, 1252, 1518, 1665
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 2 cut(s) 1150, 1528
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 1 cut(s) 1169
BseNI ACTGG 3 cut(s) 136, 583, 1419
BseXI GCAGC 5 cut(s) 300, 604, 1114, 1117, 1300
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 2 cut(s) 69, 1481
BshVI ATCGAT 1 cut(s) 1014
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 1 cut(s) 1453
BslFI GGGAC 2 cut(s) 425, 511
BslI CCNNNNNNNGG 2 cut(s) 1150, 1528
BsmAI GTCTC 5 cut(s) 188, 350, 442, 1035, 1393
BsmBI CGTCTC 1 cut(s) 1393
BsmFI GGGAC 2 cut(s) 425, 511
BsmI GAATGC 1 cut(s) 1611
BsnI GGCC 2 cut(s) 69, 1481
Bso31I GGTCTC 2 cut(s) 350, 442
Bsp119I TTCGAA 2 cut(s) 1064, 1558
Bsp1286I GDGCHC 1 cut(s) 596
Bsp1720I GCTNAGC 2 cut(s) 1119, 1155
BspACI CCGC 1 cut(s) 1639
BspANI GGCC 2 cut(s) 69, 1481
BspCNI CTCAG 1 cut(s) 1168
BspDI ATCGAT 1 cut(s) 1014
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 3 cut(s) 466, 499, 1303
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 8 cut(s) 459, 472, 589, 632, 878, 1230, 1322, 1507
BspT104I TTCGAA 2 cut(s) 1064, 1558
BspTNI GGTCTC 2 cut(s) 350, 442
BsrDI GCAATG 1 cut(s) 1140
BsrI ACTGG 3 cut(s) 136, 583, 1419
BssECI CCNNGG 4 cut(s) 229, 773, 1144, 1527
BssNAI GTATAC 1 cut(s) 1552
BssSI CACGAG 1 cut(s) 1056
BssT1I CCWWGG 2 cut(s) 229, 773
Bst1107I GTATAC 1 cut(s) 1552
Bst2BI CACGAG 1 cut(s) 1056
Bst2UI CCWGG 2 cut(s) 330, 1529
Bst4CI ACNGT 3 cut(s) 226, 840, 1173
Bst6I CTCTTC 2 cut(s) 353, 779
BstBI TTCGAA 2 cut(s) 1064, 1558
BstC8I GCNNGC 5 cut(s) 455, 459, 701, 1125, 1269
BstDEI CTNAG 3 cut(s) 710, 1119, 1155
BstDSI CCRYGG 1 cut(s) 1144
BstF5I GGATG 4 cut(s) 943, 1252, 1518, 1665
BstFNI CGCG 1 cut(s) 854
BstH2I RGCGCY 1 cut(s) 1682
BstHHI GCGC 2 cut(s) 856, 1681
BstMAI GTCTC 5 cut(s) 188, 350, 442, 1035, 1393
BstMWI GCNNNNNNNGC 5 cut(s) 1124, 1277, 1322, 1478, 1487
BstNI CCWGG 2 cut(s) 330, 1529
BstNSI RCATGY 2 cut(s) 818, 1271
BstSCI CCNGG 2 cut(s) 328, 1527
BstSFI CTRYAG 1 cut(s) 1674
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 5 cut(s) 300, 604, 1114, 1117, 1300
BstV2I GAAGAC 2 cut(s) 497, 796
BstX2I RGATCY 3 cut(s) 464, 581, 965
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 3 cut(s) 464, 581, 965
BstZ17I GTATAC 1 cut(s) 1552
Bsu15I ATCGAT 1 cut(s) 1014
BsuRI GGCC 2 cut(s) 69, 1481
BsuTUI ATCGAT 1 cut(s) 1014
BtgI CCRYGG 1 cut(s) 1144
BtsCI GGATG 4 cut(s) 943, 1252, 1518, 1665
BtsI GCAGTG 2 cut(s) 678, 1539
BtsIMutI CAGTG 3 cut(s) 678, 1426, 1539
Cac8I GCNNGC 5 cut(s) 455, 459, 701, 1125, 1269
CfoI GCGC 2 cut(s) 856, 1681
Cfr13I GGNCC 3 cut(s) 326, 498, 1141
ClaI ATCGAT 1 cut(s) 1014
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 2 cut(s) 371, 1283
CviAII CATG 7 cut(s) 43, 213, 621, 628, 815, 1268, 1569
CviQI GTAC 2 cut(s) 371, 1283
DdeI CTNAG 3 cut(s) 710, 1119, 1155
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 353, 779
EarI CTCTTC 2 cut(s) 353, 779
Eco130I CCWWGG 2 cut(s) 229, 773
Eco31I GGTCTC 2 cut(s) 350, 442
Eco47I GGWCC 3 cut(s) 326, 498, 1141
Eco47III AGCGCT 1 cut(s) 1680
EcoO109I RGGNCCY 2 cut(s) 326, 498
EcoRII CCWGG 2 cut(s) 328, 1527
EcoT14I CCWWGG 2 cut(s) 229, 773
ErhI CCWWGG 2 cut(s) 229, 773
Esp3I CGTCTC 1 cut(s) 1393
FaeI CATG 7 cut(s) 46, 216, 624, 631, 818, 1271, 1572
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 425, 511
FatI CATG 7 cut(s) 42, 212, 620, 627, 814, 1267, 1568
FauNDI CATATG 2 cut(s) 199, 799
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 1 cut(s) 1551
Fnu4HI GCNGC 5 cut(s) 314, 618, 1128, 1131, 1314
FokI GGATG 4 cut(s) 950, 1259, 1505, 1672
Fsp4HI GCNGC 5 cut(s) 314, 618, 1128, 1131, 1314
FspBI CTAG 3 cut(s) 47, 458, 509
GlaI GCGC 2 cut(s) 855, 1680
GluI GCNGC 5 cut(s) 314, 618, 1128, 1131, 1314
GsuI CTGGAG 2 cut(s) 606, 1402
HaeII RGCGCY 1 cut(s) 1682
HaeIII GGCC 2 cut(s) 69, 1481
HapII CCGG 1 cut(s) 1453
HhaI GCGC 2 cut(s) 856, 1681
Hin1II CATG 7 cut(s) 46, 216, 624, 631, 818, 1271, 1572
Hin6I GCGC 2 cut(s) 854, 1679
HinP1I GCGC 2 cut(s) 854, 1679
HincII GTYRAC 1 cut(s) 1348
HindII GTYRAC 1 cut(s) 1348
HinfI GANTC 6 cut(s) 204, 307, 778, 829, 981, 1061
HpaII CCGG 1 cut(s) 1453
HphI GGTGA 1 cut(s) 893
Hpy166II GTNNAC 6 cut(s) 121, 716, 1348, 1434, 1552, 1708
Hpy188III TCNNGA 5 cut(s) 399, 585, 916, 1058, 1715
Hpy8I GTNNAC 6 cut(s) 121, 716, 1348, 1434, 1552, 1708
HpyAV CCTTC 1 cut(s) 1657
HpyCH4III ACNGT 3 cut(s) 226, 840, 1173
HpyCH4IV ACGT 1 cut(s) 999
HpyF10VI GCNNNNNNNGC 5 cut(s) 1124, 1277, 1322, 1478, 1487
HpyF3I CTNAG 3 cut(s) 710, 1119, 1155
HpySE526I ACGT 1 cut(s) 999
Hsp92II CATG 7 cut(s) 46, 216, 624, 631, 818, 1271, 1572
HspAI GCGC 2 cut(s) 854, 1679
Ksp22I TGATCA 1 cut(s) 925
LmnI GCTCC 2 cut(s) 1421, 1572
Lsp1109I GCAGC 5 cut(s) 300, 604, 1114, 1117, 1300
LweI GCATC 6 cut(s) 185, 367, 404, 762, 1330, 1481
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 3 cut(s) 47, 458, 509
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 5 cut(s) 92, 260, 521, 1504, 1514
MboII GAAGA 9 cut(s) 232, 340, 497, 796, 801, 1078, 1214, 1375, 1468
MflI RGATCY 3 cut(s) 464, 581, 965
MhlI GDGCHC 1 cut(s) 596
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 424, 685
MnlI CCTC 6 cut(s) 254, 366, 678, 1237, 1282, 1532
Mox20I TGGCCA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 911
MscI TGGCCA 1 cut(s) 69
MseI TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1251
MslI CAYNNNNRTG 2 cut(s) 813, 1616
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 1453
MspR9I CCNGG 2 cut(s) 330, 1529
Mva1269I GAATGC 1 cut(s) 1611
MvaI CCWGG 2 cut(s) 330, 1529
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 5 cut(s) 1124, 1277, 1322, 1478, 1487
NdeI CATATG 2 cut(s) 199, 799
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 7 cut(s) 46, 216, 624, 631, 818, 1271, 1572
NlaIV GGNNCC 3 cut(s) 466, 499, 1303
NmuCI GTSAC 2 cut(s) 92, 521
NspI RCATGY 2 cut(s) 818, 1271
NspV TTCGAA 2 cut(s) 1064, 1558
PaeI GCATGC 1 cut(s) 1271
PcsI WCGNNNNNNNCGW 1 cut(s) 1020
PctI GAATGC 1 cut(s) 1611
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 6 cut(s) 204, 307, 778, 829, 981, 1061
PkrI GCNGC 5 cut(s) 315, 619, 1129, 1132, 1315
PpuMI RGGWCCY 2 cut(s) 326, 498
PsiI TTATAA 1 cut(s) 1601
Psp5II RGGWCCY 2 cut(s) 326, 498
Psp6I CCWGG 2 cut(s) 328, 1527
PspGI CCWGG 2 cut(s) 328, 1527
PspN4I GGNNCC 3 cut(s) 466, 499, 1303
PspPI GGNCC 3 cut(s) 326, 498, 1141
PspPPI RGGWCCY 2 cut(s) 326, 498
PsuI RGATCY 3 cut(s) 464, 581, 965
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 372, 1284
RsaNI GTAC 2 cut(s) 371, 1283
RseI CAYNNNNRTG 2 cut(s) 813, 1616
SaqAI TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1251
SatI GCNGC 5 cut(s) 314, 618, 1128, 1131, 1314
Sau96I GGNCC 3 cut(s) 326, 498, 1141
ScaI AGTACT 1 cut(s) 1284
ScrFI CCNGG 2 cut(s) 330, 1529
SduI GDGCHC 1 cut(s) 596
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 6 cut(s) 185, 367, 404, 762, 1330, 1481
SfcI CTRYAG 1 cut(s) 1674
SfuI TTCGAA 2 cut(s) 1064, 1558
SinI GGWCC 3 cut(s) 326, 498, 1141
SmiMI CAYNNNNRTG 2 cut(s) 813, 1616
SmlI CTYRAG 2 cut(s) 669, 1029
SmoI CTYRAG 2 cut(s) 669, 1029
SphI GCATGC 1 cut(s) 1271
SsiI CCGC 1 cut(s) 1639
SspMI CTAG 3 cut(s) 47, 458, 509
StyD4I CCNGG 2 cut(s) 328, 1527
StyI CCWWGG 2 cut(s) 229, 773
TaaI ACNGT 3 cut(s) 226, 840, 1173
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 3 cut(s) 1014, 1064, 1558
TatI WGTACW 1 cut(s) 1282
TfiI GAWTC 6 cut(s) 204, 307, 778, 829, 981, 1061
Tru1I TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1251
Tru9I TTAA 6 cut(s) 51, 158, 575, 962, 1110, 1251
TscAI CASTG 3 cut(s) 685, 1426, 1539
TseFI GTSAC 2 cut(s) 92, 521
TseI GCWGC 5 cut(s) 313, 617, 1127, 1130, 1313
Tsp45I GTSAC 2 cut(s) 92, 521
TspDTI ATGAA 4 cut(s) 564, 1032, 1095, 1181
TspGWI ACGGA 2 cut(s) 430, 1133
TspRI CASTG 3 cut(s) 685, 1426, 1539
VpaK11BI GGWCC 3 cut(s) 326, 498, 1141
XapI RAATTY 5 cut(s) 145, 318, 532, 1082, 1095
XceI RCATGY 2 cut(s) 818, 1271
XmiI GTMKAC 1 cut(s) 1551
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 3 cut(s) 47, 458, 509
ZrmI AGTACT 1 cut(s) 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.