Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006823

Physical Location & Seq

Genomic Coordinates Reverse (-)

17959126 .. 17964765

Gene Structure 5640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G160700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTCGGCGTCGTCTTCCCGAACCGTAGCTTCCCAATGGACATCTCCTCCTTCTCCCAAATCGATACCTTCCACTGGATCCTCGACATGAAGACCTTCGTTGGGGAGGCCTACGCTCAGGTCCGCGAAATGTGTATCTTCCTCTTAAACAACTTCACCCTCCCACCGGACAAAGCCCTAGCCGTCTACATCCAGTCCCCCGGCTCGTCCTTCTTCTTCTGCGGCGCCGTCACCGTGGCTCGGCCATCGGCTGTGCTCTCCTTGCCGTGGCCGGCGCCCGGCGGCGAGCTTCAGCTCACTGCCGACGCGGTGCCGCTGTCGGCCAAAATCGGTGTGTCGGTGGAGGACCTGGCGTCGCTGCCGTCGCTCGACGTCACCGCCGAGAAGCGAATAGAGCGAATGGCGATGAAGGTTGGGGAGAATCTGTTCAATTTCATGCAGTCGTTTTGTGGTGTGGATGGGTCTAAGCTGGTGGTGCCTACGGATATTTTGGATCGGTGGTTCAACAAGTTTCAGGAGAGAGCTAAGCGCGACCCTGAGTATCTGAAAGGCTTCGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF775

Protein Analysis

188

Amino Acids

20.79

Weight (kDa)

5.19

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66080
fragaria_vesca	FvH4_1g28840 FvH4_1g28840 FvH4_1g28840 FvH4_1g28840
malus_domestica	MD09G1263000.v1.1 MD17G1258000.v1.1
prunus_persica	Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1
pyrus_communis	pycom09g17730 pycom17g26000
rosa_chinensis	RchiOBHm_Chr3g0493321
rosa_laevigata	RLG00000022719
rosa_multiflora	Rmu_sc0000828.1_g000002 Rmu_sc0006010.1_g000004
rosa_roxburghii	Rroxscaffold_6G00391640
rosa_rugosa	Rorug02G0465000 Rorug03G0260300.1 Rorug03G0260400
rosa_samantha	Rh3AG309500 Rh3BG345700 Rh3CG342800 Rh3DG344600
rosa_wichuraiana	Rw3G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	375
AccB1I	GGYRCC	4 cut(s)	224, 274, 310, 475
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	3 cut(s)	126, 308, 531
AciI	CCGC	6 cut(s)	124, 222, 282, 308, 314, 378
AclWI	GGATC	3 cut(s)	73, 86, 501
AcoI	YGGCCR	3 cut(s)	242, 269, 321
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	5 cut(s)	9, 225, 275, 353, 372
AfiI	CCNNNNNNNGG	6 cut(s)	75, 102, 166, 240, 267, 278
AgsI	TTSAA	2 cut(s)	430, 505
AhdI	GACNNNNNGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	348
AloI	GAACNNNNNNTCC	4 cut(s)	410, 442, 485, 517
AluBI	AGCT	5 cut(s)	30, 289, 295, 469, 524
AluI	AGCT	5 cut(s)	30, 289, 295, 469, 524
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	73, 86, 501
AoxI	GGCC	4 cut(s)	108, 242, 269, 321
ApeKI	GCWGC	1 cut(s)	358
Asp700I	GAANNNNTTC	3 cut(s)	95, 425, 551
AspLEI	GCGC	3 cut(s)	227, 277, 531
AspS9I	GGNCC	2 cut(s)	121, 346
AsuC2I	CCSGG	2 cut(s)	201, 279
AsuHPI	GGTGA	3 cut(s)	148, 223, 367
AvaII	GGWCC	2 cut(s)	121, 346
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	4 cut(s)	224, 274, 310, 475
BbsI	GAAGAC	2 cut(s)	7, 98
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	2 cut(s)	253, 452
BceAI	ACGGC	4 cut(s)	167, 212, 250, 346
BciT130I	CCWGG	1 cut(s)	350
BcnI	CCSGG	2 cut(s)	201, 279
BfaI	CTAG	1 cut(s)	179
BfoI	RGCGCY	2 cut(s)	228, 278
BisI	GCNGC	4 cut(s)	223, 283, 314, 359
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	4 cut(s)	224, 284, 315, 360
Bme1390I	CCNGG	3 cut(s)	201, 279, 350
Bme18I	GGWCC	2 cut(s)	121, 346
BmeRI	GACNNNNNGTC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	121, 346
BmiI	GGNNCC	5 cut(s)	80, 226, 276, 312, 477
BmrFI	CCNGG	3 cut(s)	201, 279, 350
BpiI	GAAGAC	2 cut(s)	7, 98
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuMI	CCSGG	2 cut(s)	201, 279
Bsa29I	ATCGAT	1 cut(s)	63
BsaHI	GRCGYC	5 cut(s)	9, 225, 275, 353, 372
BsaJI	CCNNGG	3 cut(s)	199, 234, 266
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 410, 440
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 102, 166, 240, 267, 278
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	80, 193
BseBI	CCWGG	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	199, 234, 266
BseGI	GGATG	2 cut(s)	189, 463
BseLI	CCNNNNNNNGG	6 cut(s)	75, 102, 166, 240, 267, 278
BseMII	CTCAG	2 cut(s)	131, 528
BseNI	ACTGG	2 cut(s)	80, 193
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	345
Bsh1236I	CGCG	3 cut(s)	126, 308, 531
BshFI	GGCC	4 cut(s)	110, 244, 271, 323
BshNI	GGYRCC	4 cut(s)	224, 274, 310, 475
BshVI	ATCGAT	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	4 cut(s)	167, 201, 272, 279
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	6 cut(s)	75, 102, 166, 240, 267, 278
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	4 cut(s)	110, 244, 271, 323
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	78, 493
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	6 cut(s)	124, 222, 282, 308, 314, 378
BspANI	GGCC	4 cut(s)	110, 244, 271, 323
BspCNI	CTCAG	2 cut(s)	130, 529
BspDI	ATCGAT	1 cut(s)	63
BspFNI	CGCG	3 cut(s)	126, 308, 531
BspLI	GGNNCC	5 cut(s)	80, 226, 276, 312, 477
BspPI	GGATC	3 cut(s)	73, 86, 501
BspT107I	GGYRCC	4 cut(s)	224, 274, 310, 475
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	80, 193
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	199, 234, 266
BssMI	GATC	2 cut(s)	78, 493
BssNI	GRCGYC	5 cut(s)	9, 225, 275, 353, 372
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	26, 235
BstACI	GRCGYC	5 cut(s)	9, 225, 275, 353, 372
BstC8I	GCNNGC	2 cut(s)	273, 287
BstDEI	CTNAG	4 cut(s)	117, 465, 525, 537
BstDSI	CCRYGG	2 cut(s)	234, 266
BstF5I	GGATG	2 cut(s)	189, 463
BstFNI	CGCG	3 cut(s)	126, 308, 531
BstH2I	RGCGCY	2 cut(s)	228, 278
BstHHI	GCGC	3 cut(s)	227, 277, 531
BstKTI	GATC	2 cut(s)	81, 496
BstMBI	GATC	2 cut(s)	78, 493
BstMWI	GCNNNNNNNGC	4 cut(s)	262, 364, 394, 475
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	3 cut(s)	199, 277, 348
BstUI	CGCG	3 cut(s)	126, 308, 531
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	2 cut(s)	7, 98
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	63
BsuRI	GGCC	4 cut(s)	110, 244, 271, 323
BsuTUI	ATCGAT	1 cut(s)	63
BtgI	CCRYGG	2 cut(s)	234, 266
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	189, 463
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	73, 297
Cac8I	GCNNGC	2 cut(s)	273, 287
CfoI	GCGC	3 cut(s)	227, 277, 531
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	121, 346
ClaI	ATCGAT	1 cut(s)	63
CseI	GACGC	2 cut(s)	314, 342
CviAII	CATG	2 cut(s)	88, 436
DdeI	CTNAG	4 cut(s)	117, 465, 525, 537
DinI	GGCGCC	2 cut(s)	226, 276
DpnI	GATC	2 cut(s)	80, 495
DpnII	GATC	2 cut(s)	78, 493
DriI	GACNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	3 cut(s)	242, 269, 321
Eam1105I	GACNNNNNGTC	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	110
Eco47I	GGWCC	2 cut(s)	121, 346
Eco57I	CTGAAG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	348
EgeI	GGCGCC	2 cut(s)	226, 276
EheI	GGCGCC	2 cut(s)	226, 276
FaeI	CATG	2 cut(s)	91, 439
FaiI	YATR	2 cut(s)	89, 437
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	87, 435
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	4 cut(s)	223, 283, 314, 359
FokI	GGATG	2 cut(s)	176, 470
Fsp4HI	GCNGC	4 cut(s)	223, 283, 314, 359
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	3 cut(s)	226, 276, 530
GluI	GCNGC	4 cut(s)	223, 283, 314, 359
HaeII	RGCGCY	2 cut(s)	228, 278
HaeIII	GGCC	4 cut(s)	110, 244, 271, 323
HapII	CCGG	4 cut(s)	167, 201, 272, 279
HgaI	GACGC	2 cut(s)	314, 342
HhaI	GCGC	3 cut(s)	227, 277, 531
Hin1I	GRCGYC	5 cut(s)	9, 225, 275, 353, 372
Hin1II	CATG	2 cut(s)	91, 439
Hin6I	GCGC	3 cut(s)	225, 275, 529
HinP1I	GCGC	3 cut(s)	225, 275, 529
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	4 cut(s)	167, 201, 272, 279
HphI	GGTGA	3 cut(s)	148, 223, 367
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	2 cut(s)	19, 515
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	5 cut(s)	14, 308, 358, 367, 374
HpyAV	CCTTC	5 cut(s)	61, 79, 106, 220, 403
HpyCH4III	ACNGT	2 cut(s)	26, 235
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	262, 364, 394, 475
HpyF3I	CTNAG	4 cut(s)	117, 465, 525, 537
HpySE526I	ACGT	1 cut(s)	372
Hsp92I	GRCGYC	5 cut(s)	9, 225, 275, 353, 372
Hsp92II	CATG	2 cut(s)	91, 439
HspAI	GCGC	3 cut(s)	225, 275, 529
KasI	GGCGCC	2 cut(s)	224, 274
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	78, 493
Lsp1109I	GCAGC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	229, 373
MalI	GATC	2 cut(s)	80, 495
MboI	GATC	2 cut(s)	78, 493
MboII	GAAGA	5 cut(s)	7, 103, 130, 205, 208
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	1 cut(s)	430
Mly113I	GGCGCC	2 cut(s)	225, 275
MnlI	CCTC	6 cut(s)	58, 92, 100, 152, 170, 337
MroNI	GCCGGC	1 cut(s)	271
MroXI	GAANNNNTTC	3 cut(s)	95, 425, 551
MseI	TTAA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	4 cut(s)	167, 201, 272, 279
MspR9I	CCNGG	3 cut(s)	201, 279, 350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	3 cut(s)	126, 308, 531
MwoI	GCNNNNNNNGC	4 cut(s)	262, 364, 394, 475
NaeI	GCCGGC	1 cut(s)	273
NarI	GGCGCC	2 cut(s)	225, 275
NciI	CCSGG	2 cut(s)	201, 279
NdeII	GATC	2 cut(s)	78, 493
NgoMIV	GCCGGC	1 cut(s)	271
NlaIII	CATG	2 cut(s)	91, 439
NlaIV	GGNNCC	5 cut(s)	80, 226, 276, 312, 477
NmeAIII	GCCGAG	2 cut(s)	220, 406
NmuCI	GTSAC	2 cut(s)	229, 373
PceI	AGGCCT	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	273
PdmI	GAANNNNTTC	3 cut(s)	95, 425, 551
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	4 cut(s)	224, 284, 315, 360
PluTI	GGCGCC	2 cut(s)	228, 278
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	5 cut(s)	80, 226, 276, 312, 477
PspPI	GGNCC	2 cut(s)	121, 346
PspPPI	RGGWCCY	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	4 cut(s)	223, 283, 314, 359
Sau3AI	GATC	2 cut(s)	78, 493
Sau96I	GGNCC	2 cut(s)	121, 346
ScrFI	CCNGG	3 cut(s)	201, 279, 350
SduI	GDGCHC	1 cut(s)	258
SfoI	GGCGCC	2 cut(s)	226, 276
SinI	GGWCC	2 cut(s)	121, 346
Sse9I	AATT	1 cut(s)	430
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	6 cut(s)	124, 222, 282, 308, 314, 378
SspDI	GGCGCC	2 cut(s)	224, 274
SspMI	CTAG	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	199, 277, 348
TaaI	ACNGT	2 cut(s)	26, 235
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	63, 84, 369
TasI	AATT	1 cut(s)	430
TauI	GCSGC	3 cut(s)	225, 285, 316
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	2 cut(s)	80, 304
TseFI	GTSAC	2 cut(s)	229, 373
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	2 cut(s)	229, 373
TspDTI	ATGAA	3 cut(s)	104, 422, 424
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	80, 304
VpaK11BI	GGWCC	2 cut(s)	121, 346
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	3 cut(s)	95, 425, 551
XspI	CTAG	1 cut(s)	179
ZraI	GACGTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.