Rorug03G0260400

Protein OPI10 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
25040542 .. 25040818
277 bp
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UTR
Exon/CDS
Intron
Rorug03G0260400.1

Sequence Viewer

Length: 228 bp
ATGGGCCTCCTTATGGGCGGCCCGTTCTTCAAATTAGACCTCCACTTCGCCGTGACTAAAGACACCACTAAATCCAGAGCCGCCGCTAGGGTTTTCAAACAAAACGGCCCCAATTTGGACAACCGATTGGTCCGTGACGACCTCAAAGCAACGGAGGTTAGGGTGGTTGAAGGTGGGGATGGAGGTCGTGGGGGTGGGTTGGGTGAGGAAGAAGAAGTGAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.13

Weight (kDa)

8.12

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 81, 84
AfiI CCNNNNNNNGG 3 cut(s) 13, 87, 115
AgsI TTSAA 3 cut(s) 31, 97, 170
AoxI GGCC 3 cut(s) 4, 19, 106
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspS9I GGNCC 4 cut(s) 4, 20, 107, 130
AsuHPI GGTGA 1 cut(s) 215
AvaII GGWCC 1 cut(s) 130
BccI CCATC 1 cut(s) 173
BceAI ACGGC 2 cut(s) 35, 121
BfaI CTAG 1 cut(s) 87
BisI GCNGC 3 cut(s) 19, 81, 84
BlsI GCNGC 3 cut(s) 20, 82, 85
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 4 cut(s) 4, 20, 107, 130
BmiI GGNNCC 1 cut(s) 109
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 87, 115
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 3 cut(s) 13, 87, 115
BshFI GGCC 3 cut(s) 6, 21, 108
BslI CCNNNNNNNGG 3 cut(s) 13, 87, 115
BsnI GGCC 3 cut(s) 6, 21, 108
BspACI CCGC 3 cut(s) 18, 81, 84
BspANI GGCC 3 cut(s) 6, 21, 108
BspLI GGNNCC 1 cut(s) 109
BstF5I GGATG 1 cut(s) 184
BsuRI GGCC 3 cut(s) 6, 21, 108
BtsCI GGATG 1 cut(s) 184
Cfr13I GGNCC 4 cut(s) 4, 20, 107, 130
CviJI RGCY 4 cut(s) 6, 21, 80, 108
CviKI_1 RGCY 4 cut(s) 6, 21, 80, 108
Eco47I GGWCC 1 cut(s) 130
FaiI YATR 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 19, 81, 84
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 3 cut(s) 19, 81, 84
FspBI CTAG 1 cut(s) 87
GluI GCNGC 3 cut(s) 19, 81, 84
HaeIII GGCC 3 cut(s) 6, 21, 108
HphI GGTGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 164
LpnPI CCDG 1 cut(s) 88
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 52, 134
MboII GAAGA 3 cut(s) 19, 221, 224
MluCI AATT 2 cut(s) 32, 112
MnlI CCTC 7 cut(s) 17, 50, 148, 152, 176, 199, 213
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 52, 134
PkrI GCNGC 3 cut(s) 20, 82, 85
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 4 cut(s) 4, 20, 107, 130
SatI GCNGC 3 cut(s) 19, 81, 84
Sau96I GGNCC 4 cut(s) 4, 20, 107, 130
SetI ASST 5 cut(s) 42, 144, 159, 175, 187
SgeI CNNG 6 cut(s) 34, 64, 87, 99, 146, 200
SinI GGWCC 1 cut(s) 130
Sse9I AATT 2 cut(s) 32, 112
SsiI CCGC 3 cut(s) 18, 81, 84
SspMI CTAG 1 cut(s) 87
TasI AATT 2 cut(s) 32, 112
TauI GCSGC 3 cut(s) 21, 83, 86
TseFI GTSAC 2 cut(s) 52, 134
Tsp45I GTSAC 2 cut(s) 52, 134
TspGWI ACGGA 2 cut(s) 122, 167
VpaK11BI GGWCC 1 cut(s) 130
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.