Rorug02G0465000

Protein OPI10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006823
Physical Location & Seq
Reverse (-)
59643059 .. 59643559
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0465000.1

Sequence Viewer

Length: 501 bp
ATGGTGATTGACATCCATTTAGATTCCCATGATAGCAGACTTCATACCTACACATCAAAAATGTTGGTTACCCTTCACCCCAACGTTAAGAGCATAGTTGACGGCAGAGTCTACCATCGGACTTCTCATATAGCAAAATGTTCTGAATCAACGGAGTTGTTTATGATTTCGCGTCAGGGTCCTATTTGTAAAAAGAGCGAAGGATTTCAAGTGTTGAAGTTGGAGTATAATGGTACTACCTGTCCTCAGTGGGTAGAGATTGTTGACCTTGGTGATCGGGCATTGTTTATGGGCGGGACCAGCAGCAAATTTATCACTTCTCATGATAAAACAGTTGAAAGAAACTGTATCTATTTTGTTTTCAGGTCGTATACAGATTACGAATCTGGGGTGTTTTCCCTGACAAATAGGAGCATCAAACCTTTGACTTTTCTCAACCATCAACACCTTGAACTACTGCATCTGAATGAGTATCTTTGGTTCACACCAAATCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF775

Protein Analysis

166

Amino Acids

19.28

Weight (kDa)

7.15

Isoelectric Point (pI)

27.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 24 - 132 5.6e-16 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccI GTMKAC 2 cut(s) 111, 371
AccII CGCG 1 cut(s) 172
AciI CCGC 1 cut(s) 294
AclI AACGTT 1 cut(s) 84
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 235
AgsI TTSAA 4 cut(s) 209, 217, 338, 452
ApeKI GCWGC 1 cut(s) 303
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 179, 297
AsuHPI GGTGA 3 cut(s) 16, 68, 284
AvaII GGWCC 2 cut(s) 179, 297
BbvI GCAGC 1 cut(s) 315
BccI CCATC 2 cut(s) 123, 447
BceAI ACGGC 1 cut(s) 118
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme18I GGWCC 2 cut(s) 179, 297
BmgT120I GGNCC 2 cut(s) 179, 297
BmiI GGNNCC 2 cut(s) 180, 298
BmsI GCATC 2 cut(s) 423, 469
BsaBI GATNNNNATC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 268, 494
Bse8I GATNNNNATC 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 268, 494
BseGI GGATG 1 cut(s) 12
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 310
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 180, 298
BssECI CCNNGG 2 cut(s) 268, 494
BssMI GATC 1 cut(s) 274
BssNAI GTATAC 1 cut(s) 372
BssT1I CCWWGG 2 cut(s) 268, 494
Bst1107I GTATAC 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 334, 347
BstDEI CTNAG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 172
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstPI GGTNACC 1 cut(s) 67
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 315
BstXI CCANNNNNNTGG 1 cut(s) 495
BstZ17I GTATAC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 254
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 179, 297
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 29, 323
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 268, 494
Eco47I GGWCC 2 cut(s) 179, 297
Eco91I GGTNACC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 179
EcoO65I GGTNACC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 268, 494
ErhI CCWWGG 2 cut(s) 268, 494
FaeI CATG 2 cut(s) 32, 326
FaqI GGGAC 1 cut(s) 310
FatI CATG 2 cut(s) 28, 322
FauI CCCGC 1 cut(s) 287
FblI GTMKAC 2 cut(s) 111, 371
Fnu4HI GCNGC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 304
GluI GCNGC 1 cut(s) 304
HgaI GACGC 1 cut(s) 161
Hin1II CATG 2 cut(s) 32, 326
HincII GTYRAC 2 cut(s) 100, 265
HindII GTYRAC 2 cut(s) 100, 265
HinfI GANTC 4 cut(s) 23, 108, 146, 383
HphI GGTGA 3 cut(s) 16, 68, 284
Hpy166II GTNNAC 5 cut(s) 100, 112, 265, 372, 483
Hpy188I TCNGA 3 cut(s) 120, 145, 465
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 5 cut(s) 100, 112, 265, 372, 483
HpyAV CCTTC 2 cut(s) 83, 194
HpyCH4III ACNGT 2 cut(s) 334, 347
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 32, 326
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 411
LpnPI CCDG 6 cut(s) 161, 253, 313, 349, 372, 413
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 2 cut(s) 423, 469
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MluCI AATT 1 cut(s) 308
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 465
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 32, 326
NlaIV GGNNCC 2 cut(s) 180, 298
PagI TCATGA 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 23, 146, 383
PkrI GCNGC 1 cut(s) 305
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 180, 298
PspPI GGNCC 2 cut(s) 179, 297
PspPPI RGGWCCY 1 cut(s) 179
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 2 cut(s) 179, 297
SchI GAGTC 1 cut(s) 117
SetI ASST 7 cut(s) 50, 87, 242, 270, 368, 424, 450
SfaNI GCATC 2 cut(s) 423, 469
SinI GGWCC 2 cut(s) 179, 297
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 1 cut(s) 308
SsiI CCGC 1 cut(s) 294
StyI CCWWGG 2 cut(s) 268, 494
TaaI ACNGT 2 cut(s) 334, 347
TaiI ACGT 1 cut(s) 87
TasI AATT 1 cut(s) 308
TfiI GAWTC 3 cut(s) 23, 146, 383
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 254
TseI GCWGC 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 179, 297
XapI RAATTY 1 cut(s) 308
XmiI GTMKAC 2 cut(s) 111, 371
XmnI GAANNNNTTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.