Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006823

Physical Location & Seq

Genomic Coordinates Forward (+)

38722566 .. 38723184

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGACATCTCCTCCTTCTCCCAAATCGACACTTTCCATTGGGTCCTCGACATGAACACCTTCGTTGGTGAGGCGTACGATCAGGTTCGTGAAATGTGCATATTCCTCTTAAACGGCTTCCAGCTGCCGGCGGACAAAGCCCTAGCCGTTTACATCCAGTCTCCCGGCTCCGCCTTCCTCTTCTGCGGCGCCGTCACCGTCGCTCGCCCCTCGGCGGTGCTCTCCCTCCCCTGGCCCGAGCCCGGTGGCCAGCTCCAGCTCACCGCCGACGCCGCCCCACTCTCCGCCAAGATCGGGGTCTCGGTCGAGGACCTGGCCACGCTGCCGTCTCTGGATGTCACCGCCGAGAAGCGAATCGAGCGTTTGGCCATGAAGGTTGGGGAGAATCTCTTCAATTTTATGCAGTCGTTTTGTGGCGTCGATGGCTCCAAGCTGGTGGTGCCCATGGATATATTGGATCGGTGGTTCAAGAAGTTCCAGGAGAGGGCTAAGCGAGACCCCGAGTACTTGAAGGGCTTCGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF775

Protein Analysis

175

Amino Acids

19.41

Weight (kDa)

4.87

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hikeshi-like_N	PF05603	6 - 107	1.7e-08	Hikeshi-like, N-terminal domain
Hikeshi-like_C	PF21057	119 - 171	1.8e-12	Hikeshi-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66080
fragaria_vesca	FvH4_1g28840 FvH4_1g28840 FvH4_1g28840 FvH4_1g28840
malus_domestica	MD09G1263000.v1.1 MD17G1258000.v1.1
prunus_persica	Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1
pyrus_communis	pycom09g17730 pycom17g26000
rosa_chinensis	RchiOBHm_Chr3g0493321
rosa_laevigata	RLG00000022719
rosa_multiflora	Rmu_sc0000828.1_g000002 Rmu_sc0006010.1_g000004
rosa_roxburghii	Rroxscaffold_6G00391640
rosa_rugosa	Rorug02G0465000 Rorug03G0260300.1 Rorug03G0260400
rosa_samantha	Rh3AG309500 Rh3BG345700 Rh3CG342800 Rh3DG344600
rosa_wichuraiana	Rw3G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	188, 439
AciI	CCGC	8 cut(s)	131, 171, 186, 215, 264, 273, 285, 342
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	3 cut(s)	247, 315, 366
AcyI	GRCGYC	3 cut(s)	189, 270, 417
AfaI	GTAC	2 cut(s)	77, 506
AfiI	CCNNNNNNNGG	6 cut(s)	127, 214, 231, 242, 294, 484
AgsI	TTSAA	3 cut(s)	394, 469, 511
AjnI	CCWGG	3 cut(s)	230, 312, 477
AloI	GAACNNNNNNTCC	2 cut(s)	449, 481
AluBI	AGCT	4 cut(s)	124, 253, 259, 433
AluI	AGCT	4 cut(s)	124, 253, 259, 433
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	4 cut(s)	165, 304, 333, 489
AlwI	GGATC	1 cut(s)	465
Ama87I	CYCGRG	2 cut(s)	236, 500
AoxI	GGCC	4 cut(s)	233, 247, 315, 366
ApeKI	GCWGC	2 cut(s)	124, 322
Asp700I	GAANNNNTTC	3 cut(s)	59, 389, 515
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	43, 234, 310
AsuC2I	CCSGG	2 cut(s)	165, 243
AsuHPI	GGTGA	4 cut(s)	80, 187, 253, 331
AvaI	CYCGRG	2 cut(s)	236, 500
AvaII	GGWCC	2 cut(s)	43, 310
BaeGI	GKGCMC	1 cut(s)	444
BalI	TGGCCA	3 cut(s)	249, 317, 368
BanI	GGYRCC	2 cut(s)	188, 439
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	111, 309
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	4 cut(s)	130, 131, 176, 310
BciT130I	CCWGG	3 cut(s)	232, 314, 479
BcnI	CCSGG	2 cut(s)	165, 243
BcoDI	GTCTC	4 cut(s)	165, 304, 333, 489
BfaI	CTAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	192
BisI	GCNGC	4 cut(s)	125, 187, 273, 323
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	4 cut(s)	126, 188, 274, 324
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	5 cut(s)	165, 232, 243, 314, 479
Bme18I	GGWCC	2 cut(s)	43, 310
BmeT110I	CYCGRG	2 cut(s)	236, 500
BmgT120I	GGNCC	3 cut(s)	43, 234, 310
BmiI	GGNNCC	5 cut(s)	44, 169, 190, 427, 441
BmrFI	CCNGG	5 cut(s)	165, 232, 243, 314, 479
BpmI	CTGGAG	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuMI	CCSGG	2 cut(s)	165, 243
BsaHI	GRCGYC	3 cut(s)	189, 270, 417
BsaI	GGTCTC	2 cut(s)	304, 489
BsaJI	CCNNGG	3 cut(s)	210, 230, 444
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 214, 231, 242, 294, 484
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	3 cut(s)	232, 314, 479
BseDI	CCNNGG	3 cut(s)	210, 230, 444
BseGI	GGATG	2 cut(s)	153, 340
BseLI	CCNNNNNNNGG	6 cut(s)	127, 214, 231, 242, 294, 484
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	111, 309
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	235, 249, 317, 368
BshNI	GGYRCC	2 cut(s)	188, 439
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	2 cut(s)	236, 500
BsiSI	CCGG	3 cut(s)	128, 165, 243
BsiWI	CGTACG	1 cut(s)	75
BslI	CCNNNNNNNGG	6 cut(s)	127, 214, 231, 242, 294, 484
BsmAI	GTCTC	4 cut(s)	165, 304, 333, 489
BsmBI	CGTCTC	1 cut(s)	333
BsnI	GGCC	4 cut(s)	235, 249, 317, 368
Bso31I	GGTCTC	2 cut(s)	304, 489
BsoBI	CYCGRG	2 cut(s)	236, 500
Bsp1286I	GDGCHC	3 cut(s)	222, 243, 444
Bsp143I	GATC	3 cut(s)	79, 291, 457
Bsp1720I	GCTNAGC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	8 cut(s)	131, 171, 186, 215, 264, 273, 285, 342
BspANI	GGCC	4 cut(s)	235, 249, 317, 368
BspLI	GGNNCC	5 cut(s)	44, 169, 190, 427, 441
BspPI	GGATC	1 cut(s)	465
BspT107I	GGYRCC	2 cut(s)	188, 439
BspTNI	GGTCTC	2 cut(s)	304, 489
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	3 cut(s)	210, 230, 444
BssMI	GATC	3 cut(s)	79, 291, 457
BssNI	GRCGYC	3 cut(s)	189, 270, 417
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	3 cut(s)	232, 314, 479
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	185, 395
BstACI	GRCGYC	3 cut(s)	189, 270, 417
BstC8I	GCNNGC	3 cut(s)	129, 205, 251
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	153, 340
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	3 cut(s)	82, 294, 460
BstMAI	GTCTC	4 cut(s)	165, 304, 333, 489
BstMBI	GATC	3 cut(s)	79, 291, 457
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 272, 358, 423, 439
BstNI	CCWGG	3 cut(s)	232, 314, 479
BstSCI	CCNGG	5 cut(s)	163, 230, 241, 312, 477
BstSLI	GKGCMC	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	111, 309
BstXI	CCANNNNNNTGG	1 cut(s)	436
BsuRI	GGCC	4 cut(s)	235, 249, 317, 368
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	153, 340
Cac8I	GCNNGC	3 cut(s)	129, 205, 251
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	43, 234, 310
CseI	GACGC	2 cut(s)	278, 406
Csp6I	GTAC	2 cut(s)	76, 505
CviAII	CATG	3 cut(s)	52, 370, 445
CviQI	GTAC	2 cut(s)	76, 505
DdeI	CTNAG	1 cut(s)	489
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	3 cut(s)	81, 293, 459
DpnII	GATC	3 cut(s)	79, 291, 457
EaeI	YGGCCR	3 cut(s)	247, 315, 366
Eam1104I	CTCTTC	2 cut(s)	185, 395
EarI	CTCTTC	2 cut(s)	185, 395
EciI	GGCGGA	3 cut(s)	146, 160, 274
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	304, 489
Eco47I	GGWCC	2 cut(s)	43, 310
Eco88I	CYCGRG	2 cut(s)	236, 500
EcoO109I	RGGNCCY	2 cut(s)	43, 310
EcoRII	CCWGG	3 cut(s)	230, 312, 477
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	3 cut(s)	55, 373, 448
FaiI	YATR	6 cut(s)	53, 101, 371, 401, 446, 452
FatI	CATG	3 cut(s)	51, 369, 444
Fnu4HI	GCNGC	4 cut(s)	125, 187, 273, 323
FokI	GGATG	2 cut(s)	140, 347
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	4 cut(s)	125, 187, 273, 323
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	4 cut(s)	125, 187, 273, 323
GsuI	CTGGAG	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	4 cut(s)	235, 249, 317, 368
HapII	CCGG	3 cut(s)	128, 165, 243
HgaI	GACGC	2 cut(s)	278, 406
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	3 cut(s)	189, 270, 417
Hin1II	CATG	3 cut(s)	55, 373, 448
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	354, 385
HpaII	CCGG	3 cut(s)	128, 165, 243
HphI	GGTGA	4 cut(s)	80, 187, 253, 331
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188III	TCNNGA	3 cut(s)	89, 332, 469
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	3 cut(s)	203, 272, 422
HpyAV	CCTTC	5 cut(s)	25, 70, 184, 367, 505
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	99, 403
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 272, 358, 423, 439
HpyF3I	CTNAG	1 cut(s)	489
Hsp92I	GRCGYC	3 cut(s)	189, 270, 417
Hsp92II	CATG	3 cut(s)	55, 373, 448
HspAI	GCGC	1 cut(s)	189
KasI	GGCGCC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	79, 291, 457
LmnI	GCTCC	3 cut(s)	173, 258, 431
Lsp1109I	GCAGC	2 cut(s)	111, 309
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	193, 337
MalI	GATC	3 cut(s)	81, 293, 459
MboI	GATC	3 cut(s)	79, 291, 457
MboII	GAAGA	2 cut(s)	172, 382
MhlI	GDGCHC	3 cut(s)	222, 243, 444
MlsI	TGGCCA	3 cut(s)	249, 317, 368
MluCI	AATT	1 cut(s)	394
MluNI	TGGCCA	3 cut(s)	249, 317, 368
Mly113I	GGCGCC	1 cut(s)	189
MnlI	CCTC	9 cut(s)	22, 56, 64, 116, 188, 220, 236, 301, 477
Mox20I	TGGCCA	3 cut(s)	249, 317, 368
MroNI	GCCGGC	1 cut(s)	127
MroXI	GAANNNNTTC	3 cut(s)	59, 389, 515
MscI	TGGCCA	3 cut(s)	249, 317, 368
MseI	TTAA	1 cut(s)	110
Msp20I	TGGCCA	3 cut(s)	249, 317, 368
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	3 cut(s)	128, 165, 243
MspR9I	CCNGG	5 cut(s)	165, 232, 243, 314, 479
MvaI	CCWGG	3 cut(s)	232, 314, 479
MwoI	GCNNNNNNNGC	5 cut(s)	137, 272, 358, 423, 439
NaeI	GCCGGC	1 cut(s)	129
NarI	GGCGCC	1 cut(s)	189
NciI	CCSGG	2 cut(s)	165, 243
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	3 cut(s)	79, 291, 457
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	55, 373, 448
NlaIV	GGNNCC	5 cut(s)	44, 169, 190, 427, 441
NmeAIII	GCCGAG	2 cut(s)	191, 370
NmuCI	GTSAC	2 cut(s)	193, 337
PdiI	GCCGGC	1 cut(s)	129
PdmI	GAANNNNTTC	3 cut(s)	59, 389, 515
PfeI	GAWTC	2 cut(s)	354, 385
Pfl23II	CGTACG	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	4 cut(s)	126, 188, 274, 324
PluTI	GGCGCC	1 cut(s)	192
PpuMI	RGGWCCY	2 cut(s)	43, 310
Psp5II	RGGWCCY	2 cut(s)	43, 310
Psp6I	CCWGG	3 cut(s)	230, 312, 477
PspGI	CCWGG	3 cut(s)	230, 312, 477
PspLI	CGTACG	1 cut(s)	75
PspN4I	GGNNCC	5 cut(s)	44, 169, 190, 427, 441
PspPI	GGNCC	3 cut(s)	43, 234, 310
PspPPI	RGGWCCY	2 cut(s)	43, 310
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	2 cut(s)	77, 506
RsaNI	GTAC	2 cut(s)	76, 505
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	4 cut(s)	125, 187, 273, 323
Sau3AI	GATC	3 cut(s)	79, 291, 457
Sau96I	GGNCC	3 cut(s)	43, 234, 310
ScaI	AGTACT	1 cut(s)	506
ScrFI	CCNGG	5 cut(s)	165, 232, 243, 314, 479
SduI	GDGCHC	3 cut(s)	222, 243, 444
SetI	ASST	8 cut(s)	62, 87, 126, 255, 261, 315, 378, 435
SfoI	GGCGCC	1 cut(s)	190
SinI	GGWCC	2 cut(s)	43, 310
Sse9I	AATT	1 cut(s)	394
SsiI	CCGC	8 cut(s)	131, 171, 186, 215, 264, 273, 285, 342
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	5 cut(s)	163, 230, 241, 312, 477
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	5 cut(s)	27, 48, 306, 357, 420
TaqII	GACCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	394
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	2 cut(s)	189, 275
TfiI	GAWTC	2 cut(s)	354, 385
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseFI	GTSAC	2 cut(s)	193, 337
TseI	GCWGC	2 cut(s)	124, 322
Tsp45I	GTSAC	2 cut(s)	193, 337
TspDTI	ATGAA	2 cut(s)	68, 386
VpaK11BI	GGWCC	2 cut(s)	43, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmnI	GAANNNNTTC	3 cut(s)	59, 389, 515
XspI	CTAG	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.