Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000828.1

Orthogroup ID

OG0006823

Physical Location & Seq

Genomic Coordinates Forward (+)

5607 .. 6261

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000828.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgtttggggttgttttccccaaccgtagcttcccaatggacatctcctccttctcccaaatcgacactttccattgggtcctcgacatgaacaccttcgttggtgaggcgtacgatcaggttcgtgaaatgtgcatattcctcttaaacggcttccagctgccggcggacaaagccctagccgtttacatccagtctcccggctccgccttcctcttctgcggcgccgtcaccgtcgctcgcccctcggcggtgctctccctcccctggcccgagcccggtggccagctccagctcaccgctgacgccgccccactctccgccaagatcggggtctcggtcgaggacctggccacgctgccgtctctggatgtcaccgccgagaagcgaatcgagcgtttggccatgaaggttggggagaatctcttcaattttatgcagtcgttttgtggcgtcgatggctccaagctggtggtgcccatggatatattggatcggtggttcaagaagttccaggagagggctaagcgagaccccgagtacttgaagggcttcgttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF775

Protein Analysis

187

Amino Acids

20.79

Weight (kDa)

5.02

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66080
fragaria_vesca	FvH4_1g28840 FvH4_1g28840 FvH4_1g28840 FvH4_1g28840
malus_domestica	MD09G1263000.v1.1 MD17G1258000.v1.1
prunus_persica	Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1 Prupe.3G160700_v2.0.a1
pyrus_communis	pycom09g17730 pycom17g26000
rosa_chinensis	RchiOBHm_Chr3g0493321
rosa_laevigata	RLG00000022719
rosa_multiflora	Rmu_sc0000828.1_g000002 Rmu_sc0006010.1_g000004
rosa_roxburghii	Rroxscaffold_6G00391640
rosa_rugosa	Rorug02G0465000 Rorug03G0260300.1 Rorug03G0260400
rosa_samantha	Rh3AG309500 Rh3BG345700 Rh3CG342800 Rh3DG344600
rosa_wichuraiana	Rw3G027180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 475
AciI	CCGC	8 cut(s)	167, 207, 222, 251, 300, 309, 321, 378
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	3 cut(s)	283, 351, 402
AcyI	GRCGYC	3 cut(s)	225, 306, 453
AfaI	GTAC	2 cut(s)	113, 542
AfiI	CCNNNNNNNGG	6 cut(s)	163, 250, 267, 278, 330, 520
AgsI	TTSAA	3 cut(s)	430, 505, 547
AjnI	CCWGG	3 cut(s)	266, 348, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	5 cut(s)	30, 160, 289, 295, 469
AluI	AGCT	5 cut(s)	30, 160, 289, 295, 469
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	4 cut(s)	201, 340, 369, 525
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	2 cut(s)	272, 536
AoxI	GGCC	4 cut(s)	269, 283, 351, 402
ApeKI	GCWGC	2 cut(s)	160, 358
Asp700I	GAANNNNTTC	3 cut(s)	95, 425, 551
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	79, 270, 346
AsuC2I	CCSGG	2 cut(s)	201, 279
AsuHPI	GGTGA	4 cut(s)	116, 223, 289, 367
AvaI	CYCGRG	2 cut(s)	272, 536
AvaII	GGWCC	2 cut(s)	79, 346
BaeGI	GKGCMC	1 cut(s)	480
BalI	TGGCCA	3 cut(s)	285, 353, 404
BanI	GGYRCC	2 cut(s)	224, 475
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	147, 345
BccI	CCATC	1 cut(s)	452
BceAI	ACGGC	4 cut(s)	166, 167, 212, 346
BciT130I	CCWGG	3 cut(s)	268, 350, 515
BcnI	CCSGG	2 cut(s)	201, 279
BcoDI	GTCTC	4 cut(s)	201, 340, 369, 525
BfaI	CTAG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	4 cut(s)	161, 223, 309, 359
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	4 cut(s)	162, 224, 310, 360
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	5 cut(s)	201, 268, 279, 350, 515
Bme18I	GGWCC	2 cut(s)	79, 346
BmeT110I	CYCGRG	2 cut(s)	272, 536
BmgT120I	GGNCC	3 cut(s)	79, 270, 346
BmiI	GGNNCC	5 cut(s)	80, 205, 226, 463, 477
BmrFI	CCNGG	5 cut(s)	201, 268, 279, 350, 515
BpmI	CTGGAG	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuMI	CCSGG	2 cut(s)	201, 279
BsaHI	GRCGYC	3 cut(s)	225, 306, 453
BsaI	GGTCTC	2 cut(s)	340, 525
BsaJI	CCNNGG	3 cut(s)	246, 266, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	6 cut(s)	163, 250, 267, 278, 330, 520
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	3 cut(s)	268, 350, 515
BseDI	CCNNGG	3 cut(s)	246, 266, 480
BseGI	GGATG	2 cut(s)	189, 376
BseLI	CCNNNNNNNGG	6 cut(s)	163, 250, 267, 278, 330, 520
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	147, 345
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	271, 285, 353, 404
BshNI	GGYRCC	2 cut(s)	224, 475
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	2 cut(s)	272, 536
BsiSI	CCGG	3 cut(s)	164, 201, 279
BsiWI	CGTACG	1 cut(s)	111
BslI	CCNNNNNNNGG	6 cut(s)	163, 250, 267, 278, 330, 520
BsmAI	GTCTC	4 cut(s)	201, 340, 369, 525
BsmBI	CGTCTC	1 cut(s)	369
BsnI	GGCC	4 cut(s)	271, 285, 353, 404
Bso31I	GGTCTC	2 cut(s)	340, 525
BsoBI	CYCGRG	2 cut(s)	272, 536
Bsp1286I	GDGCHC	3 cut(s)	258, 279, 480
Bsp143I	GATC	3 cut(s)	115, 327, 493
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	8 cut(s)	167, 207, 222, 251, 300, 309, 321, 378
BspANI	GGCC	4 cut(s)	271, 285, 353, 404
BspLI	GGNNCC	5 cut(s)	80, 205, 226, 463, 477
BspPI	GGATC	1 cut(s)	501
BspT107I	GGYRCC	2 cut(s)	224, 475
BspTNI	GGTCTC	2 cut(s)	340, 525
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	246, 266, 480
BssMI	GATC	3 cut(s)	115, 327, 493
BssNI	GRCGYC	3 cut(s)	225, 306, 453
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	3 cut(s)	268, 350, 515
Bst4CI	ACNGT	2 cut(s)	26, 235
Bst6I	CTCTTC	2 cut(s)	221, 431
BstACI	GRCGYC	3 cut(s)	225, 306, 453
BstC8I	GCNNGC	3 cut(s)	165, 241, 287
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	189, 376
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	3 cut(s)	118, 330, 496
BstMAI	GTCTC	4 cut(s)	201, 340, 369, 525
BstMBI	GATC	3 cut(s)	115, 327, 493
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 308, 394, 459, 475
BstNI	CCWGG	3 cut(s)	268, 350, 515
BstSCI	CCNGG	5 cut(s)	199, 266, 277, 348, 513
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	147, 345
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	4 cut(s)	271, 285, 353, 404
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	189, 376
Cac8I	GCNNGC	3 cut(s)	165, 241, 287
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	3 cut(s)	79, 270, 346
CseI	GACGC	2 cut(s)	314, 442
Csp6I	GTAC	2 cut(s)	112, 541
CviAII	CATG	3 cut(s)	88, 406, 481
CviQI	GTAC	2 cut(s)	112, 541
DdeI	CTNAG	1 cut(s)	525
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	3 cut(s)	117, 329, 495
DpnII	GATC	3 cut(s)	115, 327, 493
EaeI	YGGCCR	3 cut(s)	283, 351, 402
Eam1104I	CTCTTC	2 cut(s)	221, 431
EarI	CTCTTC	2 cut(s)	221, 431
EciI	GGCGGA	3 cut(s)	182, 196, 310
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	2 cut(s)	340, 525
Eco47I	GGWCC	2 cut(s)	79, 346
Eco88I	CYCGRG	2 cut(s)	272, 536
EcoO109I	RGGNCCY	2 cut(s)	79, 346
EcoRII	CCWGG	3 cut(s)	266, 348, 513
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	279
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	3 cut(s)	91, 409, 484
FaiI	YATR	6 cut(s)	89, 137, 407, 437, 482, 488
FatI	CATG	3 cut(s)	87, 405, 480
Fnu4HI	GCNGC	4 cut(s)	161, 223, 309, 359
FokI	GGATG	2 cut(s)	176, 383
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	4 cut(s)	161, 223, 309, 359
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	161, 223, 309, 359
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	4 cut(s)	271, 285, 353, 404
HapII	CCGG	3 cut(s)	164, 201, 279
HgaI	GACGC	2 cut(s)	314, 442
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	3 cut(s)	225, 306, 453
Hin1II	CATG	3 cut(s)	91, 409, 484
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	390, 421
HpaII	CCGG	3 cut(s)	164, 201, 279
HphI	GGTGA	4 cut(s)	116, 223, 289, 367
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	125, 368, 505
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	2 cut(s)	239, 458
HpyAV	CCTTC	5 cut(s)	61, 106, 220, 403, 541
HpyCH4III	ACNGT	2 cut(s)	26, 235
HpyCH4V	TGCA	2 cut(s)	135, 439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 308, 394, 459, 475
HpyF3I	CTNAG	1 cut(s)	525
Hsp92I	GRCGYC	3 cut(s)	225, 306, 453
Hsp92II	CATG	3 cut(s)	91, 409, 484
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	115, 327, 493
LmnI	GCTCC	3 cut(s)	209, 294, 467
Lsp1109I	GCAGC	2 cut(s)	147, 345
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	229, 373
MalI	GATC	3 cut(s)	117, 329, 495
MboI	GATC	3 cut(s)	115, 327, 493
MboII	GAAGA	2 cut(s)	208, 418
MhlI	GDGCHC	3 cut(s)	258, 279, 480
MlsI	TGGCCA	3 cut(s)	285, 353, 404
MluCI	AATT	1 cut(s)	430
MluNI	TGGCCA	3 cut(s)	285, 353, 404
Mly113I	GGCGCC	1 cut(s)	225
MnlI	CCTC	9 cut(s)	58, 92, 100, 152, 224, 256, 272, 337, 513
Mox20I	TGGCCA	3 cut(s)	285, 353, 404
MroNI	GCCGGC	1 cut(s)	163
MroXI	GAANNNNTTC	3 cut(s)	95, 425, 551
MscI	TGGCCA	3 cut(s)	285, 353, 404
MseI	TTAA	1 cut(s)	146
Msp20I	TGGCCA	3 cut(s)	285, 353, 404
MspA1I	CMGCKG	2 cut(s)	160, 302
MspI	CCGG	3 cut(s)	164, 201, 279
MspR9I	CCNGG	5 cut(s)	201, 268, 279, 350, 515
MvaI	CCWGG	3 cut(s)	268, 350, 515
MwoI	GCNNNNNNNGC	5 cut(s)	173, 308, 394, 459, 475
NaeI	GCCGGC	1 cut(s)	165
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	2 cut(s)	201, 279
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	3 cut(s)	115, 327, 493
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	3 cut(s)	91, 409, 484
NlaIV	GGNNCC	5 cut(s)	80, 205, 226, 463, 477
NmeAIII	GCCGAG	2 cut(s)	227, 406
NmuCI	GTSAC	2 cut(s)	229, 373
PdiI	GCCGGC	1 cut(s)	165
PdmI	GAANNNNTTC	3 cut(s)	95, 425, 551
PfeI	GAWTC	2 cut(s)	390, 421
Pfl23II	CGTACG	1 cut(s)	111
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	4 cut(s)	162, 224, 310, 360
PluTI	GGCGCC	1 cut(s)	228
PpuMI	RGGWCCY	2 cut(s)	79, 346
Psp5II	RGGWCCY	2 cut(s)	79, 346
Psp6I	CCWGG	3 cut(s)	266, 348, 513
PspGI	CCWGG	3 cut(s)	266, 348, 513
PspLI	CGTACG	1 cut(s)	111
PspN4I	GGNNCC	5 cut(s)	80, 205, 226, 463, 477
PspPI	GGNCC	3 cut(s)	79, 270, 346
PspPPI	RGGWCCY	2 cut(s)	79, 346
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	113, 542
RsaNI	GTAC	2 cut(s)	112, 541
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	4 cut(s)	161, 223, 309, 359
Sau3AI	GATC	3 cut(s)	115, 327, 493
Sau96I	GGNCC	3 cut(s)	79, 270, 346
ScaI	AGTACT	1 cut(s)	542
ScrFI	CCNGG	5 cut(s)	201, 268, 279, 350, 515
SduI	GDGCHC	3 cut(s)	258, 279, 480
SetI	ASST	9 cut(s)	32, 98, 123, 162, 291, 297, 351, 414, 471
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	2 cut(s)	79, 346
Sse9I	AATT	1 cut(s)	430
SsiI	CCGC	8 cut(s)	167, 207, 222, 251, 300, 309, 321, 378
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	5 cut(s)	199, 266, 277, 348, 513
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	26, 235
TaqI	TCGA	5 cut(s)	63, 84, 342, 393, 456
TaqII	GACCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	430
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	2 cut(s)	225, 311
TfiI	GAWTC	2 cut(s)	390, 421
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseFI	GTSAC	2 cut(s)	229, 373
TseI	GCWGC	2 cut(s)	160, 358
Tsp45I	GTSAC	2 cut(s)	229, 373
TspDTI	ATGAA	2 cut(s)	104, 422
VpaK11BI	GGWCC	2 cut(s)	79, 346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmnI	GAANNNNTTC	3 cut(s)	95, 425, 551
XspI	CTAG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.