Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016372

Physical Location & Seq

Genomic Coordinates Forward (+)

19146447 .. 19149447

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G174300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTCAAATGAAAAGAAAAACCCTTACCAGTATGACCCTTTCGACTACAACCCCCATGAAATCAACAGGCCAAGCTTTCCATTCTTCAATTATGGCACTCACTCCATACAAGATCCACAAAACCTACACGGGTTCGAATCCGATCACCCCAATTCTTCATTCATGAGCTTCACTGACTGCCTCCATGGCTCAATGGACTACAACACCCTCTCAAAAGCCTTTGACATGTCATGTTCTTCATCTGAAGTCATTTCTCCCCAGTTGGATCATGAGAATTCCAAGAACCAGCAGGCTGCTGTAGGAGATCACTCGGTGGGGACTAGCACCACTGAAAACCCATCTACACCAAACTCCTCAGTTTCTTCTTCATCTAATGAAGCTGCTGGTTCTCATGAACATGAAGATTCAGAGAAGAAGAAGAAAGAAAAGCAGCCAAAAGTGGCAGTGTGTGATGAAGCGGCAGGAGATGAGGAAGACAAGTCAAAGAAAGGGAGCAAAGCGAAAAAGAAAGAGAAACGGCAGAGGGAACCACGGTTTGCCTTCCTGACTAAGAGCGAAGTGGATCACCTTGAAGATGGATACAGATGGAGAAAGTACGGACAGAAGGCAGTCAAGAACAGCCCTTATCCTAGAAGTTATTATAGATGCACTACTCAAAAGTGCGTTGTAAAGAAGCGCGTCGAGAGATCATTTCAAGATCCATCCATTGTGATCACAACATATGAGGGTCAGCACAACCATCAGTGTCCAGCAACACTCCGTGGAAATCTCAACCTCAATGCCGTTGGAATGCTGTCCCCTAATCCCCTTTTGACATCCGCGTCTCTCAATGGATCAGCGAGATTTCAACATGAATTCTTAACTCAGTTTCTCCCAATGAACAACCAATTGCAATTGCAATTGCAAAGCCATCATCATCAGGATGATCACCAAGCAAGTAATTCCATGATATATTCAAACCTCGTGGCCCCTCACCCTCATCATCATCATCAGCAGCAGCATCAGCGGCAGCAGCTACATGTTCCTGACTATGGTTTATTGCAAGATTTAGTTCCTTCATTTGGTCACAAGCAAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010453 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042659 GO:0043565 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

361

Amino Acids

40.95

Weight (kDa)

6.8

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016372)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38370
malus_domestica	MD09G1150700.v1.1 MD17G1138100.v1.1
prunus_persica	Prupe.3G174300_v2.0.a1
pyrus_communis	pycom09g07040
rosa_chinensis	RchiOBHm_Chr2g0151681
rosa_laevigata	RLG00000020568
rosa_multiflora	Rmu_sc0005294.1_g000047
rosa_roxburghii	Rroxscaffold_2G00096260
rosa_rugosa	Rorug02G0428000
rosa_samantha	Rh2AG488700 Rh2BG501500 Rh2CG475300 Rh2DG512600
rosa_wichuraiana	Rw2G040080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	820
AccII	CGCG	2 cut(s)	678, 821
AciI	CCGC	3 cut(s)	458, 819, 1006
AclWI	GGATC	5 cut(s)	107, 273, 570, 692, 841
AcsI	RAATTY	2 cut(s)	274, 854
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	2 cut(s)	313, 761
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	2 cut(s)	1031, 1061
AflIII	ACRYGT	2 cut(s)	225, 1018
AgsI	TTSAA	5 cut(s)	88, 572, 695, 848, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	75, 168, 380, 1015
AluI	AGCT	4 cut(s)	75, 168, 380, 1015
Alw26I	GTCTC	1 cut(s)	828
AlwI	GGATC	5 cut(s)	107, 273, 570, 692, 841
AoxI	GGCC	2 cut(s)	68, 966
ApeKI	GCWGC	7 cut(s)	293, 380, 430, 994, 997, 1009, 1012
ApoI	RAATTY	2 cut(s)	274, 854
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	1 cut(s)	967
AsuHPI	GGTGA	4 cut(s)	137, 557, 920, 965
AsuII	TTCGAA	1 cut(s)	135
BauI	CACGAG	1 cut(s)	962
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	7 cut(s)	280, 367, 442, 1006, 1009, 1021, 1024
BccI	CCATC	6 cut(s)	346, 569, 579, 709, 747, 918
BceAI	ACGGC	2 cut(s)	533, 767
BciVI	GTATCC	1 cut(s)	572
BclI	TGATCA	2 cut(s)	711, 925
BcoDI	GTCTC	1 cut(s)	828
BfaI	CTAG	2 cut(s)	321, 630
BfmI	CTRYAG	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	572
BglI	GCCNNNNNGGC	1 cut(s)	186
BisI	GCNGC	9 cut(s)	294, 381, 431, 459, 995, 998, 1007, 1010, 1013
BlsI	GCNGC	9 cut(s)	295, 382, 432, 460, 996, 999, 1008, 1011, 1014
BmgT120I	GGNCC	1 cut(s)	967
BmiI	GGNNCC	2 cut(s)	528, 969
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	635, 1009
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	184, 530, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	1031, 1061
Bse1I	ACTGG	2 cut(s)	28, 259
BseDI	CCNNGG	3 cut(s)	184, 530, 760
BseGI	GGATG	3 cut(s)	701, 815, 928
BseLI	CCNNNNNNNGG	2 cut(s)	1031, 1061
BseMII	CTCAG	2 cut(s)	369, 878
BseNI	ACTGG	2 cut(s)	28, 259
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	7 cut(s)	280, 367, 442, 1006, 1009, 1021, 1024
Bsh1236I	CGCG	2 cut(s)	678, 821
BshFI	GGCC	2 cut(s)	70, 968
BslFI	GGGAC	2 cut(s)	331, 781
BslI	CCNNNNNNNGG	2 cut(s)	1031, 1061
BsmAI	GTCTC	1 cut(s)	828
BsmBI	CGTCTC	1 cut(s)	828
BsmFI	GGGAC	2 cut(s)	331, 781
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	70, 968
Bsp119I	TTCGAA	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	3 cut(s)	458, 819, 1006
BspANI	GGCC	2 cut(s)	70, 968
BspCNI	CTCAG	2 cut(s)	368, 877
BspFNI	CGCG	2 cut(s)	678, 821
BspHI	TCATGA	3 cut(s)	162, 268, 391
BspLI	GGNNCC	2 cut(s)	528, 969
BspPI	GGATC	5 cut(s)	107, 273, 570, 692, 841
BspT104I	TTCGAA	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	28, 259
BssECI	CCNNGG	3 cut(s)	184, 530, 760
BssSI	CACGAG	1 cut(s)	962
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	962
Bst4CI	ACNGT	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	355, 549, 864
BstDSI	CCRYGG	3 cut(s)	184, 530, 760
BstF5I	GGATG	3 cut(s)	701, 815, 928
BstFNI	CGCG	2 cut(s)	678, 821
BstHHI	GCGC	1 cut(s)	678
BstMAI	GTCTC	1 cut(s)	828
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 1003, 1006, 1012
BstNSI	RCATGY	2 cut(s)	229, 1022
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	678, 821
BstV1I	GCAGC	7 cut(s)	280, 367, 442, 1006, 1009, 1021, 1024
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	2 cut(s)	112, 697
BstYI	RGATCY	2 cut(s)	112, 697
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	2 cut(s)	70, 968
BtgI	CCRYGG	3 cut(s)	184, 530, 760
BtsCI	GGATG	3 cut(s)	701, 815, 928
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	4 cut(s)	171, 327, 450, 749
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	3 cut(s)	162, 268, 391
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	1 cut(s)	967
CseI	GACGC	2 cut(s)	667, 810
Csp6I	GTAC	1 cut(s)	595
CspCI	CAANNNNNGTGG	2 cut(s)	945, 980
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	3 cut(s)	355, 549, 864
DraIII	CACNNNGTG	2 cut(s)	313, 761
DrdI	GACNNNNNNGTC	1 cut(s)	820
DseDI	GACNNNNNNGTC	1 cut(s)	820
Eco130I	CCWWGG	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	264
EcoRI	GAATTC	2 cut(s)	274, 854
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	828
FaqI	GGGAC	2 cut(s)	331, 781
FauNDI	CATATG	1 cut(s)	721
FbaI	TGATCA	2 cut(s)	711, 925
Fnu4HI	GCNGC	9 cut(s)	294, 381, 431, 459, 995, 998, 1007, 1010, 1013
FokI	GGATG	3 cut(s)	688, 802, 935
Fsp4HI	GCNGC	9 cut(s)	294, 381, 431, 459, 995, 998, 1007, 1010, 1013
FspBI	CTAG	2 cut(s)	321, 630
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	9 cut(s)	294, 381, 431, 459, 995, 998, 1007, 1010, 1013
HaeIII	GGCC	2 cut(s)	70, 968
HgaI	GACGC	2 cut(s)	667, 810
HhaI	GCGC	1 cut(s)	678
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	2 cut(s)	137, 404
HphI	GGTGA	4 cut(s)	137, 557, 920, 965
Hpy188I	TCNGA	3 cut(s)	142, 244, 409
Hpy188III	TCNNGA	9 cut(s)	163, 269, 392, 544, 613, 682, 695, 920, 1025
Hpy99I	CGWCG	1 cut(s)	683
HpyAV	CCTTC	3 cut(s)	550, 598, 1065
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4V	TGCA	5 cut(s)	648, 892, 898, 904, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 1003, 1006, 1012
HpyF3I	CTNAG	3 cut(s)	355, 549, 864
HspAI	GCGC	1 cut(s)	676
Ksp22I	TGATCA	2 cut(s)	711, 925
LmnI	GCTCC	1 cut(s)	492
Lsp1109I	GCAGC	7 cut(s)	280, 367, 442, 1006, 1009, 1021, 1024
LweI	GCATC	2 cut(s)	635, 1009
MaeI	CTAG	2 cut(s)	321, 630
MaeIII	GTNAC	1 cut(s)	1064
MfeI	CAATTG	3 cut(s)	887, 893, 899
MflI	RGATCY	2 cut(s)	112, 697
MluCI	AATT	8 cut(s)	88, 151, 274, 854, 887, 893, 899, 940
MmeI	TCCRAC	2 cut(s)	243, 766
MseI	TTAA	1 cut(s)	860
MslI	CAYNNNNRTG	2 cut(s)	396, 921
MspA1I	CMGCKG	1 cut(s)	1006
MunI	CAATTG	3 cut(s)	887, 893, 899
Mva1269I	GAATGC	1 cut(s)	795
MvnI	CGCG	2 cut(s)	678, 821
MwoI	GCNNNNNNNGC	4 cut(s)	186, 1003, 1006, 1012
NcoI	CCATGG	1 cut(s)	184
NdeI	CATATG	1 cut(s)	721
NlaIV	GGNNCC	2 cut(s)	528, 969
NmuCI	GTSAC	1 cut(s)	1064
NspI	RCATGY	2 cut(s)	229, 1022
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	3 cut(s)	162, 268, 391
PciI	ACATGT	2 cut(s)	225, 1018
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	137, 404
PkrI	GCNGC	9 cut(s)	295, 382, 432, 460, 996, 999, 1008, 1011, 1014
PscI	ACATGT	2 cut(s)	225, 1018
PspN4I	GGNNCC	2 cut(s)	528, 969
PspPI	GGNCC	1 cut(s)	967
PsuI	RGATCY	2 cut(s)	112, 697
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	2 cut(s)	396, 921
SaqAI	TTAA	1 cut(s)	860
SatI	GCNGC	9 cut(s)	294, 381, 431, 459, 995, 998, 1007, 1010, 1013
Sau96I	GGNCC	1 cut(s)	967
SetI	ASST	8 cut(s)	77, 126, 170, 382, 570, 777, 963, 1017
SfaNI	GCATC	2 cut(s)	635, 1009
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	396, 921
Sse9I	AATT	8 cut(s)	88, 151, 274, 854, 887, 893, 899, 940
SsiI	CCGC	3 cut(s)	458, 819, 1006
SspMI	CTAG	2 cut(s)	321, 630
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	534
TaqI	TCGA	3 cut(s)	42, 135, 681
TasI	AATT	8 cut(s)	88, 151, 274, 854, 887, 893, 899, 940
TauI	GCSGC	2 cut(s)	461, 1009
TfiI	GAWTC	2 cut(s)	137, 404
Tru1I	TTAA	1 cut(s)	860
Tru9I	TTAA	1 cut(s)	860
TscAI	CASTG	4 cut(s)	178, 334, 450, 749
TseFI	GTSAC	1 cut(s)	1064
TseI	GCWGC	7 cut(s)	293, 380, 430, 994, 997, 1009, 1012
Tsp45I	GTSAC	1 cut(s)	1064
TspGWI	ACGGA	2 cut(s)	612, 749
TspRI	CASTG	4 cut(s)	178, 334, 450, 749
XapI	RAATTY	2 cut(s)	274, 854
XceI	RCATGY	2 cut(s)	229, 1022
XspI	CTAG	2 cut(s)	321, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.